bmmalone

# largely from here: https://gist.github.com/justin808/9493723

set -g mode-mouse on
set -g mouse-resize-pane on
set -g mouse-select-pane on
set -g mouse-select-window on

# Toggle mouse on
bind m \
	set -g mode-mouse on \;\

bmmalone

#! /usr/bin/env bash

sudo apt-get --assume-yes install build-essential
sudo apt-get --assume-yes install gfortran
sudo apt-get --assume-yes install zlib1g-dev
sudo apt-get --assume-yes install libreadline-dev
sudo apt-get --assume-yes install libncursesw5-dev
sudo apt-get --assume-yes install lib32ncurses5-dev
sudo apt-get --assume-yes install libgdbm-dev
sudo apt-get --assume-yes install libsqlite3-dev

bmmalone

\documentclass[a4paper,10pt]{article}

% make writing commands easier
\usepackage{xparse}

% colored text
\usepackage{color}

% include eps, pdf graphics
\usepackage{graphicx}

bmmalone

%%%
% Add spaces when necessary after commands
%%%
\usepackage{xspace}


%%%
% Make sure we can use colors
%%%
\usepackage{xcolor}

bmmalone

#! /usr/bin/env bash

export STAR_VERSION=2.5.3a
export SAMTOOLS_VERSION=1.4.1
export BOWTIE2_VERSION=2.3.2
export SEQAN_VERSION=2.2.0
export FLEXBAR_VERSION=3.0.3
export BITSEQ_VERSION=0.7.5

sudo apt-get install libtbb-dev

bmmalone

#! /usr/bin/env bash

###
# This is `Zarat`'s comment to `leo`'s answer from this SO thread:
#     https://stackoverflow.com/questions/3497123
#
# Plus some additional logic to checkout a branch, if specified
###
set -x # echo on

bmmalone

#! /usr/bin/env bash

find . -name "*eps" -exec sh -c 'eps2png "${0%.*}"' {} \;

bmmalone

#! /usr/bin/env bash

while read p; do
  getent hosts $p | cut -d' ' -f 1
done <$1 

bmmalone

#! /bin/bash

GCC_VERSION="10.1.0"
WORKDIR="$HOME/gcc/src/"
INSTALLDIR="/$HOME/gcc/install/gcc-${GCC_VERSION}"

set +h

unset LIBRARY_PATH CPATH C_INCLUDE_PATH PKG_CONFIG_PATH CPLUS_INCLUDE_PATH INCLUDE LD_LIBRARY_PATH

bmmalone

#! /usr/bin/env python3

import argparse
import pickle
from pystan import StanModel

def main():
    parser = argparse.ArgumentParser(formatter_class=argparse.ArgumentDefaultsHelpFormatter,
        description="This script compiles a stan model and pickles it to disc")
    parser.add_argument("stan", help="The stan model file")