Balaji Ramalingam bramalingam
bramalingam
/ Micromanager_Matlab_OMERO.m
Last active
March 14, 2020 10:21
Integration : Micromanager+Matlab+OMERO
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| %Multiple sites imaging | |
| %and image analysis(identifying cells with a circularity index>0.8) | |
| %feedback, based on number of cells, change objective to check assay qc | |
| %Author : Balaji.R | |
| %Init | |
| clear all;close all; | |
| %Import packages | |
| import mmcorej.*; |
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| Last login: Wed Aug 5 14:29:02 on ttys001 | |
| ls29010:tools bramalingam$ ./showinf -omexml /Volumes/ome/data_repo/from_skyking/cellomics/qa-7352/test/MFGTMP-PC_130509120002_B02f00d0.C01 | |
| *** A new stable version is available. *** | |
| *** Install the new version using: *** | |
| *** 'upgradechecker -install' *** | |
| Checking file format [Cellomics C01] | |
| Initializing reader | |
| CellomicsReader initializing /Volumes/ome/data_repo/from_skyking/cellomics/qa-7352/test/MFGTMP-PC_130509120002_B02f00d0.C01 | |
| Decompressing file | |
| Reading header data |