Ben Weisburd bw2
bw2
/ bench_us.py
Last active
May 14, 2026 15:32
trviz Cython optimization PR — validation harness (1000-case differential test) and microsecond benchmark
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| """Microsecond-precision benchmark for trviz.cy.decompose.decompose_cy. | |
| Times decompose_cy on 6 representative cases (perfect repeats of varying | |
| motif length, multi-motif mixes, mutated long sequences). Reports | |
| min / median / mean over N iterations per case (default N=20). | |
| Usage: | |
| python3 bench_us.py [n_iter] | |
| To compare two versions, run the script against each (e.g. on different |