"featureType": {
"id": "http://purl.obolibrary.org/obo/SO_0001059"
}
Brian bwalsh
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| diff --git a/dcc-portal-ui/app/develop/scripts/config.js b/dcc-portal-ui/app/develop/scripts/config.js | |
| index 5fb070c..5923632 100644 | |
| --- a/dcc-portal-ui/app/develop/scripts/config.js | |
| +++ b/dcc-portal-ui/app/develop/scripts/config.js | |
| @@ -1,9 +1,9 @@ | |
| // Global $ICGC_DEV_CONFIG used for dev environment | |
| // profile | |
| global.$ICGC_DEV_CONFIG = { | |
| - // Set DEVELOPER_LOCAL_MODE to true to turn on local developer profile | |
| - // for the 'grunt server' task |
bwalsh
/ dcc-portal-changes-12-18
Last active
January 9, 2017 18:55
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| diff --git a/dcc-portal-ui/app/scripts/auth/js/auth.js b/dcc-portal-ui/app/scripts/auth/js/auth.js | |
| index d5f6d81..5663a8e 100644 | |
| --- a/dcc-portal-ui/app/scripts/auth/js/auth.js | |
| +++ b/dcc-portal-ui/app/scripts/auth/js/auth.js | |
| @@ -47,7 +47,6 @@ | |
| user.verifying = false; | |
| console.log('ohsutoken present'); | |
| user.token = ohsutoken; |
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| info: | |
| title: YA-DMS API description | |
| description: |- | |
| ### "Yet Another Data Management Service" | |
| ##### Key endpoints | |
|  | |
bwalsh
/ sparql-query.py
Created
June 7, 2016 20:37
python snippet to test sparql queries (use in REPL)
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| # python snippet to test sparql queries | |
| # set up the graph | |
| import rdflib | |
| _rdfGraph = rdflib.ConjunctiveGraph() | |
| _rdfGraph.parse('tests/data/datasets/dataset1/phenotypes/cgd/cgd-test.ttl', format='n3') | |
| # substitute your query here |
bwalsh
/ biodata-elastic-setup.diff
Created
April 15, 2016 15:59
Initial setup of new biodata backend for elasticsearch
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| # git diff | |
| diff --git a/ga4gh/datamodel/datasets.py b/ga4gh/datamodel/datasets.py | |
| index 25f3f7f..c07537e 100644 | |
| --- a/ga4gh/datamodel/datasets.py | |
| +++ b/ga4gh/datamodel/datasets.py | |
| @@ -358,3 +358,66 @@ class FileSystemDataset(AbstractDataset): | |
| except KeyError as err: | |
| raise exceptions.MissingDatasetMetadataException( | |
| metadataFileName, str(err)) | |
| + |
bwalsh
/ gist:71d80d0d4ee97ac176cc
Last active
March 14, 2016 22:20
bwalsh
/ g2p_issue_discussion.rst
Last active
March 10, 2016 20:32
— forked from malisas/g2p_issue_discussion.rst
Comparing implementation choices between Ensembl and OHSU servers, and discussing how schema needs to be better defined.
bwalsh
/ dockerized-tools-checklist.md
Created
May 27, 2015 16:53
Cookbook for Galaxy Tool integration with local docker registry
Note: the following instructions have been validated with a CentOS 6.6 virtual machine
This document outlines the installation of Docker clients (v1.6), a Docker registry (v2.0), approaches on updating Nginx configurations, and testing methodologies for verifying Dockerized tools work in Galaxy.
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