Created
July 25, 2022 11:13
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(partial) EasyBuild log for failed build of /tmp/eb-n2wzmsqx/files_pr15900/l/LAMMPS/LAMMPS-23Jun2022-foss-2021a-kokkos-CUDA-11.3.1.eb (PR(s) #15900) (easyblock PR(s) #2213)
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| == 2022-07-25 11:13:50,428 environment.py:91 INFO Environment variable BLAS_LAPACK_MT_SHARED_LIBS set to libflexiblas.so,libgfortran.so (previously undefined) | |
| == 2022-07-25 11:13:50,428 environment.py:91 INFO Environment variable EBVARBLAS_LAPACK_MT_SHARED_LIBS set to libflexiblas.so,libgfortran.so (previously undefined) | |
| == 2022-07-25 11:13:50,428 environment.py:91 INFO Environment variable BLAS_LAPACK_MT_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previously undefined) | |
| == 2022-07-25 11:13:50,428 environment.py:91 INFO Environment variable EBVARBLAS_LAPACK_MT_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previously undefined) | |
| == 2022-07-25 11:13:50,429 environment.py:91 INFO Environment variable BLAS_LAPACK_SHARED_LIBS set to libflexiblas.so,libgfortran.so (previously undefined) | |
| == 2022-07-25 11:13:50,429 environment.py:91 INFO Environment variable EBVARBLAS_LAPACK_SHARED_LIBS set to libflexiblas.so,libgfortran.so (previously undefined) | |
| == 2022-07-25 11:13:50,429 environment.py:91 INFO Environment variable BLAS_LAPACK_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previously undefined) | |
| == 2022-07-25 11:13:50,429 environment.py:91 INFO Environment variable EBVARBLAS_LAPACK_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previously undefined) | |
| == 2022-07-25 11:13:50,429 environment.py:91 INFO Environment variable BLAS_LIB_DIR set to /cvmfs/pilot.eessi-hpc.org/versions/2021.12/software/linux/x86_64/amd/zen2/software/FlexiBLAS/3.0.4-GCC-10.3.0/lib (previously undefined) | |
| == 2022-07-25 11:13:50,429 environment.py:91 INFO Environment variable EBVARBLAS_LIB_DIR set to /cvmfs/pilot.eessi-hpc.org/versions/2021.12/software/linux/x86_64/amd/zen2/software/FlexiBLAS/3.0.4-GCC-10.3.0/lib (previously undefined) | |
| == 2022-07-25 11:13:50,429 environment.py:91 INFO Environment variable BLAS_MT_SHARED_LIBS set to libflexiblas.so,libgfortran.so (previously undefined) | |
| == 2022-07-25 11:13:50,429 environment.py:91 INFO Environment variable EBVARBLAS_MT_SHARED_LIBS set to libflexiblas.so,libgfortran.so (previously undefined) | |
| == 2022-07-25 11:13:50,429 environment.py:91 INFO Environment variable BLAS_MT_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previously undefined) | |
| == 2022-07-25 11:13:50,429 environment.py:91 INFO Environment variable EBVARBLAS_MT_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previously undefined) | |
| == 2022-07-25 11:13:50,430 environment.py:91 INFO Environment variable BLAS_SHARED_LIBS set to libflexiblas.so,libgfortran.so (previously undefined) | |
| == 2022-07-25 11:13:50,430 environment.py:91 INFO Environment variable EBVARBLAS_SHARED_LIBS set to libflexiblas.so,libgfortran.so (previously undefined) | |
| == 2022-07-25 11:13:50,430 environment.py:91 INFO Environment variable BLAS_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previously undefined) | |
| == 2022-07-25 11:13:50,430 environment.py:91 INFO Environment variable EBVARBLAS_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previously undefined) | |
| == 2022-07-25 11:13:50,430 environment.py:91 INFO Environment variable CC set to mpicc (previously undefined) | |
| == 2022-07-25 11:13:50,430 environment.py:91 INFO Environment variable EBVARCC set to mpicc (previously undefined) | |
| == 2022-07-25 11:13:50,430 environment.py:91 INFO Environment variable CC_SEQ set to gcc (previously undefined) | |
| == 2022-07-25 11:13:50,430 environment.py:91 INFO Environment variable EBVARCC_SEQ set to gcc (previously undefined) | |
| == 2022-07-25 11:13:50,430 environment.py:91 INFO Environment variable CFLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno -fopenmp (previously undefined) | |
| == 2022-07-25 11:13:50,431 environment.py:91 INFO Environment variable EBVARCFLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno -fopenmp (previously undefined) | |
| == 2022-07-25 11:13:50,431 environment.py:91 INFO Environment variable CPPFLAGS set to -I/project/def-sponsor00/easybuild/software/ScaFaCoS/1.0.1-foss-2021a/include -I/project/def-sponsor00/easybuild/software/PLUMED/2.7.2-foss-2021a/include -I/project/def-sponsor00/easybuild/software/Eigen/3.3.9-GCCcore-10.3.0/include -I/project/def-sponsor00/easybuild/software/kim-api/2.2.1-GCCcore-10.3.0/include -I/project/def-sponsor00/easybuild/software/Voro++/0.4.6-GCCcore-10.3.0/include -I/project/def-sponsor00/easybuild/software/FFmpeg/4.3.2-GCCcore-10.3.0/include -I/cvmfs/pilot.eessi-hpc.org/versions/2021.12/software/linux/x86_64/amd/zen2/software/libxml2/2.9.10-GCCcore-10.3.0/include -I/project/def-sponsor00/easybuild/software/PCRE/8.44-GCCcore-10.3.0/include -I/project/def-sponsor00/easybuild/software/HDF5/1.10.7-gompi-2021a/include -I/project/def-sponsor00/easybuild/software/GSL/2.7-GCC-10.3.0/include -I/project/def-sponsor00/easybuild/software/netCDF/4.8.0-gompi-2021a/include -I/project/def-sponsor00/easybuild/software/libjpeg-turbo/2.0.6-GCCcore-10.3.0/include -I/project/def-sponsor00/easybuild/software/libpng/1.6.37-GCCcore-10.3.0/include -I/cvmfs/pilot.eessi-hpc.org/versions/2021.12/software/linux/x86_64/amd/zen2/software/Python/3.9.5-GCCcore-10.3.0/include -I/project/def-sponsor00/easybuild/software/NCCL/2.10.3-GCCcore-10.3.0-CUDA-11.3.1/include -I/project/def-sponsor00/easybuild/software/CUDA/11.3.1/include -I/cvmfs/pilot.eessi-hpc.org/versions/2021.12/software/linux/x86_64/amd/zen2/software/FFTW/3.3.9-gompi-2021a/include -I/cvmfs/pilot.eessi-hpc.org/versions/2021.12/software/linux/x86_64/amd/zen2/software/FlexiBLAS/3.0.4-GCC-10.3.0/include -I/cvmfs/pilot.eessi-hpc.org/versions/2021.12/software/linux/x86_64/amd/zen2/software/FlexiBLAS/3.0.4-GCC-10.3.0/include/flexiblas (previously undefined) | |
| == 2022-07-25 11:13:50,431 environment.py:91 INFO Environment variable EBVARCPPFLAGS set to -I/project/def-sponsor00/easybuild/software/ScaFaCoS/1.0.1-foss-2021a/include -I/project/def-sponsor00/easybuild/software/PLUMED/2.7.2-foss-2021a/include -I/project/def-sponsor00/easybuild/software/Eigen/3.3.9-GCCcore-10.3.0/include -I/project/def-sponsor00/easybuild/software/kim-api/2.2.1-GCCcore-10.3.0/include -I/project/def-sponsor00/easybuild/software/Voro++/0.4.6-GCCcore-10.3.0/include -I/project/def-sponsor00/easybuild/software/FFmpeg/4.3.2-GCCcore-10.3.0/include -I/cvmfs/pilot.eessi-hpc.org/versions/2021.12/software/linux/x86_64/amd/zen2/software/libxml2/2.9.10-GCCcore-10.3.0/include -I/project/def-sponsor00/easybuild/software/PCRE/8.44-GCCcore-10.3.0/include -I/project/def-sponsor00/easybuild/software/HDF5/1.10.7-gompi-2021a/include -I/project/def-sponsor00/easybuild/software/GSL/2.7-GCC-10.3.0/include -I/project/def-sponsor00/easybuild/software/netCDF/4.8.0-gompi-2021a/include -I/project/def-sponsor00/easybuild/software/libjpeg-turbo/2.0.6-GCCcore-10.3.0/include -I/project/def-sponsor00/easybuild/software/libpng/1.6.37-GCCcore-10.3.0/include -I/cvmfs/pilot.eessi-hpc.org/versions/2021.12/software/linux/x86_64/amd/zen2/software/Python/3.9.5-GCCcore-10.3.0/include -I/project/def-sponsor00/easybuild/software/NCCL/2.10.3-GCCcore-10.3.0-CUDA-11.3.1/include -I/project/def-sponsor00/easybuild/software/CUDA/11.3.1/include -I/cvmfs/pilot.eessi-hpc.org/versions/2021.12/software/linux/x86_64/amd/zen2/software/FFTW/3.3.9-gompi-2021a/include -I/cvmfs/pilot.eessi-hpc.org/versions/2021.12/software/linux/x86_64/amd/zen2/software/FlexiBLAS/3.0.4-GCC-10.3.0/include -I/cvmfs/pilot.eessi-hpc.org/versions/2021.12/software/linux/x86_64/amd/zen2/software/FlexiBLAS/3.0.4-GCC-10.3.0/include/flexiblas (previously undefined) | |
| == 2022-07-25 11:13:50,431 environment.py:91 INFO Environment variable CXX set to mpicxx (previously undefined) | |
| == 2022-07-25 11:13:50,431 environment.py:91 INFO Environment variable EBVARCXX set to mpicxx (previously undefined) | |
| == 2022-07-25 11:13:50,431 environment.py:91 INFO Environment variable CXXFLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno -fopenmp (previously undefined) | |
| == 2022-07-25 11:13:50,431 environment.py:91 INFO Environment variable EBVARCXXFLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno -fopenmp (previously undefined) | |
| == 2022-07-25 11:13:50,431 environment.py:91 INFO Environment variable CXX_SEQ set to g++ (previously undefined) | |
| == 2022-07-25 11:13:50,431 environment.py:91 INFO Environment variable EBVARCXX_SEQ set to g++ (previously undefined) | |
| == 2022-07-25 11:13:50,431 environment.py:91 INFO Environment variable F77 set to mpifort (previously undefined) | |
| == 2022-07-25 11:13:50,432 environment.py:91 INFO Environment variable EBVARF77 set to mpifort (previously undefined) | |
| == 2022-07-25 11:13:50,432 environment.py:91 INFO Environment variable F77_SEQ set to gfortran (previously undefined) | |
| == 2022-07-25 11:13:50,432 environment.py:91 INFO Environment variable EBVARF77_SEQ set to gfortran (previously undefined) | |
| == 2022-07-25 11:13:50,432 environment.py:91 INFO Environment variable F90 set to mpifort (previously undefined) | |
| == 2022-07-25 11:13:50,432 environment.py:91 INFO Environment variable EBVARF90 set to mpifort (previously undefined) | |
| == 2022-07-25 11:13:50,432 environment.py:91 INFO Environment variable F90FLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno -fopenmp (previously undefined) | |
| == 2022-07-25 11:13:50,432 environment.py:91 INFO Environment variable EBVARF90FLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno -fopenmp (previously undefined) | |
| == 2022-07-25 11:13:50,432 environment.py:91 INFO Environment variable F90_SEQ set to gfortran (previously undefined) | |
| == 2022-07-25 11:13:50,432 environment.py:91 INFO Environment variable EBVARF90_SEQ set to gfortran (previously undefined) | |
| == 2022-07-25 11:13:50,432 environment.py:91 INFO Environment variable FC set to mpifort (previously undefined) | |
| == 2022-07-25 11:13:50,433 environment.py:91 INFO Environment variable EBVARFC set to mpifort (previously undefined) | |
| == 2022-07-25 11:13:50,433 environment.py:91 INFO Environment variable FCFLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno -fopenmp (previously undefined) | |
| == 2022-07-25 11:13:50,433 environment.py:91 INFO Environment variable EBVARFCFLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno -fopenmp (previously undefined) | |
| == 2022-07-25 11:13:50,433 environment.py:91 INFO Environment variable FC_SEQ set to gfortran (previously undefined) | |
| == 2022-07-25 11:13:50,433 environment.py:91 INFO Environment variable EBVARFC_SEQ set to gfortran (previously undefined) | |
| == 2022-07-25 11:13:50,433 environment.py:91 INFO Environment variable FFLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno -fopenmp (previously undefined) | |
| == 2022-07-25 11:13:50,433 environment.py:91 INFO Environment variable EBVARFFLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno -fopenmp (previously undefined) | |
| == 2022-07-25 11:13:50,433 environment.py:91 INFO Environment variable FFTW_INC_DIR set to /cvmfs/pilot.eessi-hpc.org/versions/2021.12/software/linux/x86_64/amd/zen2/software/FFTW/3.3.9-gompi-2021a/include (previously undefined) | |
| == 2022-07-25 11:13:50,433 environment.py:91 INFO Environment variable EBVARFFTW_INC_DIR set to /cvmfs/pilot.eessi-hpc.org/versions/2021.12/software/linux/x86_64/amd/zen2/software/FFTW/3.3.9-gompi-2021a/include (previously undefined) | |
| == 2022-07-25 11:13:50,434 environment.py:91 INFO Environment variable FFTW_LIB_DIR set to /cvmfs/pilot.eessi-hpc.org/versions/2021.12/software/linux/x86_64/amd/zen2/software/FFTW/3.3.9-gompi-2021a/lib (previously undefined) | |
| == 2022-07-25 11:13:50,434 environment.py:91 INFO Environment variable EBVARFFTW_LIB_DIR set to /cvmfs/pilot.eessi-hpc.org/versions/2021.12/software/linux/x86_64/amd/zen2/software/FFTW/3.3.9-gompi-2021a/lib (previously undefined) | |
| == 2022-07-25 11:13:50,434 environment.py:91 INFO Environment variable FFTW_SHARED_LIBS set to libfftw3_mpi.so,libfftw3.so (previously undefined) | |
| == 2022-07-25 11:13:50,434 environment.py:91 INFO Environment variable EBVARFFTW_SHARED_LIBS set to libfftw3_mpi.so,libfftw3.so (previously undefined) | |
| == 2022-07-25 11:13:50,434 environment.py:91 INFO Environment variable FFTW_SHARED_LIBS_MT set to libfftw3_omp.so,libfftw3.so,libpthread.so (previously undefined) | |
| == 2022-07-25 11:13:50,434 environment.py:91 INFO Environment variable EBVARFFTW_SHARED_LIBS_MT set to libfftw3_omp.so,libfftw3.so,libpthread.so (previously undefined) | |
| == 2022-07-25 11:13:50,434 environment.py:91 INFO Environment variable FFTW_STATIC_LIBS set to libfftw3_mpi.a,libfftw3.a (previously undefined) | |
| == 2022-07-25 11:13:50,434 environment.py:91 INFO Environment variable EBVARFFTW_STATIC_LIBS set to libfftw3_mpi.a,libfftw3.a (previously undefined) | |
| == 2022-07-25 11:13:50,434 environment.py:91 INFO Environment variable FFTW_STATIC_LIBS_MT set to libfftw3_omp.a,libfftw3.a,libpthread.a (previously undefined) | |
| == 2022-07-25 11:13:50,435 environment.py:91 INFO Environment variable EBVARFFTW_STATIC_LIBS_MT set to libfftw3_omp.a,libfftw3.a,libpthread.a (previously undefined) | |
| == 2022-07-25 11:13:50,435 environment.py:91 INFO Environment variable FFT_INC_DIR set to /cvmfs/pilot.eessi-hpc.org/versions/2021.12/software/linux/x86_64/amd/zen2/software/FFTW/3.3.9-gompi-2021a/include (previously undefined) | |
| == 2022-07-25 11:13:50,435 environment.py:91 INFO Environment variable EBVARFFT_INC_DIR set to /cvmfs/pilot.eessi-hpc.org/versions/2021.12/software/linux/x86_64/amd/zen2/software/FFTW/3.3.9-gompi-2021a/include (previously undefined) | |
| == 2022-07-25 11:13:50,435 environment.py:91 INFO Environment variable FFT_LIB_DIR set to /cvmfs/pilot.eessi-hpc.org/versions/2021.12/software/linux/x86_64/amd/zen2/software/FFTW/3.3.9-gompi-2021a/lib (previously undefined) | |
| == 2022-07-25 11:13:50,435 environment.py:91 INFO Environment variable EBVARFFT_LIB_DIR set to /cvmfs/pilot.eessi-hpc.org/versions/2021.12/software/linux/x86_64/amd/zen2/software/FFTW/3.3.9-gompi-2021a/lib (previously undefined) | |
| == 2022-07-25 11:13:50,435 environment.py:91 INFO Environment variable FFT_SHARED_LIBS set to libfftw3_mpi.so,libfftw3.so (previously undefined) | |
| == 2022-07-25 11:13:50,435 environment.py:91 INFO Environment variable EBVARFFT_SHARED_LIBS set to libfftw3_mpi.so,libfftw3.so (previously undefined) | |
| == 2022-07-25 11:13:50,435 environment.py:91 INFO Environment variable FFT_SHARED_LIBS_MT set to libfftw3_omp.so,libfftw3.so,libpthread.so (previously undefined) | |
| == 2022-07-25 11:13:50,435 environment.py:91 INFO Environment variable EBVARFFT_SHARED_LIBS_MT set to libfftw3_omp.so,libfftw3.so,libpthread.so (previously undefined) | |
| == 2022-07-25 11:13:50,435 environment.py:91 INFO Environment variable FFT_STATIC_LIBS set to libfftw3_mpi.a,libfftw3.a (previously undefined) | |
| == 2022-07-25 11:13:50,436 environment.py:91 INFO Environment variable EBVARFFT_STATIC_LIBS set to libfftw3_mpi.a,libfftw3.a (previously undefined) | |
| == 2022-07-25 11:13:50,436 environment.py:91 INFO Environment variable FFT_STATIC_LIBS_MT set to libfftw3_omp.a,libfftw3.a,libpthread.a (previously undefined) | |
| == 2022-07-25 11:13:50,436 environment.py:91 INFO Environment variable EBVARFFT_STATIC_LIBS_MT set to libfftw3_omp.a,libfftw3.a,libpthread.a (previously undefined) | |
| == 2022-07-25 11:13:50,436 environment.py:91 INFO Environment variable FLIBS set to -lgfortran (previously undefined) | |
| == 2022-07-25 11:13:50,436 environment.py:91 INFO Environment variable EBVARFLIBS set to -lgfortran (previously undefined) | |
| == 2022-07-25 11:13:50,436 environment.py:91 INFO Environment variable LAPACK_INC_DIR set to /cvmfs/pilot.eessi-hpc.org/versions/2021.12/software/linux/x86_64/amd/zen2/software/FlexiBLAS/3.0.4-GCC-10.3.0/include/flexiblas (previously undefined) | |
| == 2022-07-25 11:13:50,436 environment.py:91 INFO Environment variable EBVARLAPACK_INC_DIR set to /cvmfs/pilot.eessi-hpc.org/versions/2021.12/software/linux/x86_64/amd/zen2/software/FlexiBLAS/3.0.4-GCC-10.3.0/include/flexiblas (previously undefined) | |
| == 2022-07-25 11:13:50,436 environment.py:91 INFO Environment variable LAPACK_LIB_DIR set to /cvmfs/pilot.eessi-hpc.org/versions/2021.12/software/linux/x86_64/amd/zen2/software/FlexiBLAS/3.0.4-GCC-10.3.0/lib (previously undefined) | |
| == 2022-07-25 11:13:50,436 environment.py:91 INFO Environment variable EBVARLAPACK_LIB_DIR set to /cvmfs/pilot.eessi-hpc.org/versions/2021.12/software/linux/x86_64/amd/zen2/software/FlexiBLAS/3.0.4-GCC-10.3.0/lib (previously undefined) | |
| == 2022-07-25 11:13:50,436 environment.py:91 INFO Environment variable LAPACK_MT_SHARED_LIBS set to libflexiblas.so,libgfortran.so (previously undefined) | |
| == 2022-07-25 11:13:50,437 environment.py:91 INFO Environment variable EBVARLAPACK_MT_SHARED_LIBS set to libflexiblas.so,libgfortran.so (previously undefined) | |
| == 2022-07-25 11:13:50,437 environment.py:91 INFO Environment variable LAPACK_MT_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previously undefined) | |
| == 2022-07-25 11:13:50,437 environment.py:91 INFO Environment variable EBVARLAPACK_MT_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previously undefined) | |
| == 2022-07-25 11:13:50,437 environment.py:91 INFO Environment variable LAPACK_SHARED_LIBS set to libflexiblas.so,libgfortran.so (previously undefined) | |
| == 2022-07-25 11:13:50,437 environment.py:91 INFO Environment variable EBVARLAPACK_SHARED_LIBS set to libflexiblas.so,libgfortran.so (previously undefined) | |
| == 2022-07-25 11:13:50,437 environment.py:91 INFO Environment variable LAPACK_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previously undefined) | |
| == 2022-07-25 11:13:50,437 environment.py:91 INFO Environment variable EBVARLAPACK_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previously undefined) | |
| == 2022-07-25 11:13:50,437 environment.py:91 INFO Environment variable LDFLAGS set to -L/cvmfs/pilot.eessi-hpc.org/versions/2021.12/software/linux/x86_64/amd/zen2/software/SciPy-bundle/2021.05-foss-2021a/lib64 -L/cvmfs/pilot.eessi-hpc.org/versions/2021.12/software/linux/x86_64/amd/zen2/software/SciPy-bundle/2021.05-foss-2021a/lib -L/project/def-sponsor00/easybuild/software/ScaFaCoS/1.0.1-foss-2021a/lib64 -L/project/def-sponsor00/easybuild/software/ScaFaCoS/1.0.1-foss-2021a/lib -L/project/def-sponsor00/easybuild/software/PLUMED/2.7.2-foss-2021a/lib64 -L/project/def-sponsor00/easybuild/software/PLUMED/2.7.2-foss-2021a/lib -L/project/def-sponsor00/easybuild/software/kim-api/2.2.1-GCCcore-10.3.0/lib64 -L/project/def-sponsor00/easybuild/software/kim-api/2.2.1-GCCcore-10.3.0/lib -L/project/def-sponsor00/easybuild/software/Voro++/0.4.6-GCCcore-10.3.0/lib64 -L/project/def-sponsor00/easybuild/software/Voro++/0.4.6-GCCcore-10.3.0/lib -L/project/def-sponsor00/easybuild/software/FFmpeg/4.3.2-GCCcore-10.3.0/lib64 -L/project/def-sponsor00/easybuild/software/FFmpeg/4.3.2-GCCcore-10.3.0/lib -L/cvmfs/pilot.eessi-hpc.org/versions/2021.12/software/linux/x86_64/amd/zen2/software/libxml2/2.9.10-GCCcore-10.3.0/lib64 -L/cvmfs/pilot.eessi-hpc.org/versions/2021.12/software/linux/x86_64/amd/zen2/software/libxml2/2.9.10-GCCcore-10.3.0/lib -L/project/def-sponsor00/easybuild/software/PCRE/8.44-GCCcore-10.3.0/lib64 -L/project/def-sponsor00/easybuild/software/PCRE/8.44-GCCcore-10.3.0/lib -L/project/def-sponsor00/easybuild/software/HDF5/1.10.7-gompi-2021a/lib64 -L/project/def-sponsor00/easybuild/software/HDF5/1.10.7-gompi-2021a/lib -L/project/def-sponsor00/easybuild/software/GSL/2.7-GCC-10.3.0/lib64 -L/project/def-sponsor00/easybuild/software/GSL/2.7-GCC-10.3.0/lib -L/project/def-sponsor00/easybuild/software/netCDF/4.8.0-gompi-2021a/lib64 -L/project/def-sponsor00/easybuild/software/netCDF/4.8.0-gompi-2021a/lib -L/project/def-sponsor00/easybuild/software/libjpeg-turbo/2.0.6-GCCcore-10.3.0/lib64 -L/project/def-sponsor00/easybuild/software/libjpeg-turbo/2.0.6-GCCcore-10.3.0/lib -L/project/def-sponsor00/easybuild/software/libpng/1.6.37-GCCcore-10.3.0/lib64 -L/project/def-sponsor00/easybuild/software/libpng/1.6.37-GCCcore-10.3.0/lib -L/cvmfs/pilot.eessi-hpc.org/versions/2021.12/software/linux/x86_64/amd/zen2/software/Python/3.9.5-GCCcore-10.3.0/lib64 -L/cvmfs/pilot.eessi-hpc.org/versions/2021.12/software/linux/x86_64/amd/zen2/software/Python/3.9.5-GCCcore-10.3.0/lib -L/project/def-sponsor00/easybuild/software/NCCL/2.10.3-GCCcore-10.3.0-CUDA-11.3.1/lib64 -L/project/def-sponsor00/easybuild/software/NCCL/2.10.3-GCCcore-10.3.0-CUDA-11.3.1/lib -L/project/def-sponsor00/easybuild/software/CUDA/11.3.1/lib64 -L/project/def-sponsor00/easybuild/software/CUDA/11.3.1/lib -L/project/def-sponsor00/easybuild/software/archspec/0.1.2-GCCcore-10.3.0/lib64 -L/project/def-sponsor00/easybuild/software/archspec/0.1.2-GCCcore-10.3.0/lib -L/cvmfs/pilot.eessi-hpc.org/versions/2021.12/software/linux/x86_64/amd/zen2/software/FFTW/3.3.9-gompi-2021a/lib64 -L/cvmfs/pilot.eessi-hpc.org/versions/2021.12/software/linux/x86_64/amd/zen2/software/FFTW/3.3.9-gompi-2021a/lib -L/cvmfs/pilot.eessi-hpc.org/versions/2021.12/software/linux/x86_64/amd/zen2/software/ScaLAPACK/2.1.0-gompi-2021a-fb/lib64 -L/cvmfs/pilot.eessi-hpc.org/versions/2021.12/software/linux/x86_64/amd/zen2/software/ScaLAPACK/2.1.0-gompi-2021a-fb/lib -L/cvmfs/pilot.eessi-hpc.org/versions/2021.12/software/linux/x86_64/amd/zen2/software/FlexiBLAS/3.0.4-GCC-10.3.0/lib64 -L/cvmfs/pilot.eessi-hpc.org/versions/2021.12/software/linux/x86_64/amd/zen2/software/FlexiBLAS/3.0.4-GCC-10.3.0/lib -L/cvmfs/pilot.eessi-hpc.org/versions/2021.12/software/linux/x86_64/amd/zen2/software/GCCcore/10.3.0/lib64 -L/cvmfs/pilot.eessi-hpc.org/versions/2021.12/software/linux/x86_64/amd/zen2/software/GCCcore/10.3.0/lib (previously undefined) | |
| == 2022-07-25 11:13:50,437 environment.py:91 INFO Environment variable EBVARLDFLAGS set to -L/cvmfs/pilot.eessi-hpc.org/versions/2021.12/software/linux/x86_64/amd/zen2/software/SciPy-bundle/2021.05-foss-2021a/lib64 -L/cvmfs/pilot.eessi-hpc.org/versions/2021.12/software/linux/x86_64/amd/zen2/software/SciPy-bundle/2021.05-foss-2021a/lib -L/project/def-sponsor00/easybuild/software/ScaFaCoS/1.0.1-foss-2021a/lib64 -L/project/def-sponsor00/easybuild/software/ScaFaCoS/1.0.1-foss-2021a/lib -L/project/def-sponsor00/easybuild/software/PLUMED/2.7.2-foss-2021a/lib64 -L/project/def-sponsor00/easybuild/software/PLUMED/2.7.2-foss-2021a/lib -L/project/def-sponsor00/easybuild/software/kim-api/2.2.1-GCCcore-10.3.0/lib64 -L/project/def-sponsor00/easybuild/software/kim-api/2.2.1-GCCcore-10.3.0/lib -L/project/def-sponsor00/easybuild/software/Voro++/0.4.6-GCCcore-10.3.0/lib64 -L/project/def-sponsor00/easybuild/software/Voro++/0.4.6-GCCcore-10.3.0/lib -L/project/def-sponsor00/easybuild/software/FFmpeg/4.3.2-GCCcore-10.3.0/lib64 -L/project/def-sponsor00/easybuild/software/FFmpeg/4.3.2-GCCcore-10.3.0/lib -L/cvmfs/pilot.eessi-hpc.org/versions/2021.12/software/linux/x86_64/amd/zen2/software/libxml2/2.9.10-GCCcore-10.3.0/lib64 -L/cvmfs/pilot.eessi-hpc.org/versions/2021.12/software/linux/x86_64/amd/zen2/software/libxml2/2.9.10-GCCcore-10.3.0/lib -L/project/def-sponsor00/easybuild/software/PCRE/8.44-GCCcore-10.3.0/lib64 -L/project/def-sponsor00/easybuild/software/PCRE/8.44-GCCcore-10.3.0/lib -L/project/def-sponsor00/easybuild/software/HDF5/1.10.7-gompi-2021a/lib64 -L/project/def-sponsor00/easybuild/software/HDF5/1.10.7-gompi-2021a/lib -L/project/def-sponsor00/easybuild/software/GSL/2.7-GCC-10.3.0/lib64 -L/project/def-sponsor00/easybuild/software/GSL/2.7-GCC-10.3.0/lib -L/project/def-sponsor00/easybuild/software/netCDF/4.8.0-gompi-2021a/lib64 -L/project/def-sponsor00/easybuild/software/netCDF/4.8.0-gompi-2021a/lib -L/project/def-sponsor00/easybuild/software/libjpeg-turbo/2.0.6-GCCcore-10.3.0/lib64 -L/project/def-sponsor00/easybuild/software/libjpeg-turbo/2.0.6-GCCcore-10.3.0/lib -L/project/def-sponsor00/easybuild/software/libpng/1.6.37-GCCcore-10.3.0/lib64 -L/project/def-sponsor00/easybuild/software/libpng/1.6.37-GCCcore-10.3.0/lib -L/cvmfs/pilot.eessi-hpc.org/versions/2021.12/software/linux/x86_64/amd/zen2/software/Python/3.9.5-GCCcore-10.3.0/lib64 -L/cvmfs/pilot.eessi-hpc.org/versions/2021.12/software/linux/x86_64/amd/zen2/software/Python/3.9.5-GCCcore-10.3.0/lib -L/project/def-sponsor00/easybuild/software/NCCL/2.10.3-GCCcore-10.3.0-CUDA-11.3.1/lib64 -L/project/def-sponsor00/easybuild/software/NCCL/2.10.3-GCCcore-10.3.0-CUDA-11.3.1/lib -L/project/def-sponsor00/easybuild/software/CUDA/11.3.1/lib64 -L/project/def-sponsor00/easybuild/software/CUDA/11.3.1/lib -L/project/def-sponsor00/easybuild/software/archspec/0.1.2-GCCcore-10.3.0/lib64 -L/project/def-sponsor00/easybuild/software/archspec/0.1.2-GCCcore-10.3.0/lib -L/cvmfs/pilot.eessi-hpc.org/versions/2021.12/software/linux/x86_64/amd/zen2/software/FFTW/3.3.9-gompi-2021a/lib64 -L/cvmfs/pilot.eessi-hpc.org/versions/2021.12/software/linux/x86_64/amd/zen2/software/FFTW/3.3.9-gompi-2021a/lib -L/cvmfs/pilot.eessi-hpc.org/versions/2021.12/software/linux/x86_64/amd/zen2/software/ScaLAPACK/2.1.0-gompi-2021a-fb/lib64 -L/cvmfs/pilot.eessi-hpc.org/versions/2021.12/software/linux/x86_64/amd/zen2/software/ScaLAPACK/2.1.0-gompi-2021a-fb/lib -L/cvmfs/pilot.eessi-hpc.org/versions/2021.12/software/linux/x86_64/amd/zen2/software/FlexiBLAS/3.0.4-GCC-10.3.0/lib64 -L/cvmfs/pilot.eessi-hpc.org/versions/2021.12/software/linux/x86_64/amd/zen2/software/FlexiBLAS/3.0.4-GCC-10.3.0/lib -L/cvmfs/pilot.eessi-hpc.org/versions/2021.12/software/linux/x86_64/amd/zen2/software/GCCcore/10.3.0/lib64 -L/cvmfs/pilot.eessi-hpc.org/versions/2021.12/software/linux/x86_64/amd/zen2/software/GCCcore/10.3.0/lib (previously undefined) | |
| == 2022-07-25 11:13:50,438 environment.py:91 INFO Environment variable LIBBLAS set to -lflexiblas -lgfortran (previously undefined) | |
| == 2022-07-25 11:13:50,438 environment.py:91 INFO Environment variable EBVARLIBBLAS set to -lflexiblas -lgfortran (previously undefined) | |
| == 2022-07-25 11:13:50,438 environment.py:91 INFO Environment variable LIBBLAS_MT set to -lflexiblas -lgfortran (previously undefined) | |
| == 2022-07-25 11:13:50,438 environment.py:91 INFO Environment variable EBVARLIBBLAS_MT set to -lflexiblas -lgfortran (previously undefined) | |
| == 2022-07-25 11:13:50,438 environment.py:91 INFO Environment variable LIBFFT set to -lfftw3_mpi -lfftw3 (previously undefined) | |
| == 2022-07-25 11:13:50,438 environment.py:91 INFO Environment variable EBVARLIBFFT set to -lfftw3_mpi -lfftw3 (previously undefined) | |
| == 2022-07-25 11:13:50,438 environment.py:91 INFO Environment variable LIBFFT_MT set to -lfftw3_omp -lfftw3 -lpthread (previously undefined) | |
| == 2022-07-25 11:13:50,438 environment.py:91 INFO Environment variable EBVARLIBFFT_MT set to -lfftw3_omp -lfftw3 -lpthread (previously undefined) | |
| == 2022-07-25 11:13:50,438 environment.py:91 INFO Environment variable LIBLAPACK set to -lflexiblas -lgfortran (previously undefined) | |
| == 2022-07-25 11:13:50,439 environment.py:91 INFO Environment variable EBVARLIBLAPACK set to -lflexiblas -lgfortran (previously undefined) | |
| == 2022-07-25 11:13:50,439 environment.py:91 INFO Environment variable LIBLAPACK_MT set to -lflexiblas -lgfortran (previously undefined) | |
| == 2022-07-25 11:13:50,439 environment.py:91 INFO Environment variable EBVARLIBLAPACK_MT set to -lflexiblas -lgfortran (previously undefined) | |
| == 2022-07-25 11:13:50,439 environment.py:91 INFO Environment variable LIBLAPACK_MT_ONLY set to -lflexiblas -lgfortran (previously undefined) | |
| == 2022-07-25 11:13:50,439 environment.py:91 INFO Environment variable EBVARLIBLAPACK_MT_ONLY set to -lflexiblas -lgfortran (previously undefined) | |
| == 2022-07-25 11:13:50,439 environment.py:91 INFO Environment variable LIBLAPACK_ONLY set to -lflexiblas -lgfortran (previously undefined) | |
| == 2022-07-25 11:13:50,439 environment.py:91 INFO Environment variable EBVARLIBLAPACK_ONLY set to -lflexiblas -lgfortran (previously undefined) | |
| == 2022-07-25 11:13:50,439 environment.py:91 INFO Environment variable EBVARLIBS set to -lm -lpthread (previously undefined) | |
| == 2022-07-25 11:13:50,439 environment.py:91 INFO Environment variable LIBSCALAPACK set to -lscalapack -lflexiblas -lgfortran (previously undefined) | |
| == 2022-07-25 11:13:50,439 environment.py:91 INFO Environment variable EBVARLIBSCALAPACK set to -lscalapack -lflexiblas -lgfortran (previously undefined) | |
| == 2022-07-25 11:13:50,440 environment.py:91 INFO Environment variable LIBSCALAPACK_MT set to -lscalapack -lflexiblas -lpthread -lgfortran (previously undefined) | |
| == 2022-07-25 11:13:50,440 environment.py:91 INFO Environment variable EBVARLIBSCALAPACK_MT set to -lscalapack -lflexiblas -lpthread -lgfortran (previously undefined) | |
| == 2022-07-25 11:13:50,440 environment.py:91 INFO Environment variable LIBSCALAPACK_MT_ONLY set to -lscalapack -lgfortran (previously undefined) | |
| == 2022-07-25 11:13:50,440 environment.py:91 INFO Environment variable EBVARLIBSCALAPACK_MT_ONLY set to -lscalapack -lgfortran (previously undefined) | |
| == 2022-07-25 11:13:50,440 environment.py:91 INFO Environment variable LIBSCALAPACK_ONLY set to -lscalapack -lgfortran (previously undefined) | |
| == 2022-07-25 11:13:50,440 environment.py:91 INFO Environment variable EBVARLIBSCALAPACK_ONLY set to -lscalapack -lgfortran (previously undefined) | |
| == 2022-07-25 11:13:50,440 environment.py:91 INFO Environment variable MPICC set to mpicc (previously undefined) | |
| == 2022-07-25 11:13:50,440 environment.py:91 INFO Environment variable EBVARMPICC set to mpicc (previously undefined) | |
| == 2022-07-25 11:13:50,440 environment.py:91 INFO Environment variable MPICXX set to mpicxx (previously undefined) | |
| == 2022-07-25 11:13:50,440 environment.py:91 INFO Environment variable EBVARMPICXX set to mpicxx (previously undefined) | |
| == 2022-07-25 11:13:50,441 environment.py:91 INFO Environment variable MPIF77 set to mpifort (previously undefined) | |
| == 2022-07-25 11:13:50,441 environment.py:91 INFO Environment variable EBVARMPIF77 set to mpifort (previously undefined) | |
| == 2022-07-25 11:13:50,441 environment.py:91 INFO Environment variable MPIF90 set to mpifort (previously undefined) | |
| == 2022-07-25 11:13:50,441 environment.py:91 INFO Environment variable EBVARMPIF90 set to mpifort (previously undefined) | |
| == 2022-07-25 11:13:50,441 environment.py:91 INFO Environment variable MPIFC set to mpifort (previously undefined) | |
| == 2022-07-25 11:13:50,441 environment.py:91 INFO Environment variable EBVARMPIFC set to mpifort (previously undefined) | |
| == 2022-07-25 11:13:50,441 environment.py:91 INFO Environment variable MPI_INC_DIR set to /project/def-sponsor00/easybuild/software/OpenMPI/4.1.1-GCC-10.3.0/include (previously undefined) | |
| == 2022-07-25 11:13:50,441 environment.py:91 INFO Environment variable EBVARMPI_INC_DIR set to /project/def-sponsor00/easybuild/software/OpenMPI/4.1.1-GCC-10.3.0/include (previously undefined) | |
| == 2022-07-25 11:13:50,441 environment.py:91 INFO Environment variable MPI_LIB_DIR set to /project/def-sponsor00/easybuild/software/OpenMPI/4.1.1-GCC-10.3.0/lib64 (previously undefined) | |
| == 2022-07-25 11:13:50,442 environment.py:91 INFO Environment variable EBVARMPI_LIB_DIR set to /project/def-sponsor00/easybuild/software/OpenMPI/4.1.1-GCC-10.3.0/lib64 (previously undefined) | |
| == 2022-07-25 11:13:50,442 environment.py:91 INFO Environment variable MPI_LIB_SHARED set to /project/def-sponsor00/easybuild/software/OpenMPI/4.1.1-GCC-10.3.0/lib64/libmpi.so (previously undefined) | |
| == 2022-07-25 11:13:50,442 environment.py:91 INFO Environment variable EBVARMPI_LIB_SHARED set to /project/def-sponsor00/easybuild/software/OpenMPI/4.1.1-GCC-10.3.0/lib64/libmpi.so (previously undefined) | |
| == 2022-07-25 11:13:50,442 environment.py:91 INFO Environment variable MPI_LIB_STATIC set to (previously undefined) | |
| == 2022-07-25 11:13:50,442 environment.py:91 INFO Environment variable EBVARMPI_LIB_STATIC set to (previously undefined) | |
| == 2022-07-25 11:13:50,442 environment.py:91 INFO Environment variable OMPI_CC set to gcc (previously undefined) | |
| == 2022-07-25 11:13:50,442 environment.py:91 INFO Environment variable EBVAROMPI_CC set to gcc (previously undefined) | |
| == 2022-07-25 11:13:50,442 environment.py:91 INFO Environment variable OMPI_CXX set to g++ (previously undefined) | |
| == 2022-07-25 11:13:50,442 environment.py:91 INFO Environment variable EBVAROMPI_CXX set to g++ (previously undefined) | |
| == 2022-07-25 11:13:50,442 environment.py:91 INFO Environment variable OMPI_F77 set to gfortran (previously undefined) | |
| == 2022-07-25 11:13:50,443 environment.py:91 INFO Environment variable EBVAROMPI_F77 set to gfortran (previously undefined) | |
| == 2022-07-25 11:13:50,443 environment.py:91 INFO Environment variable OMPI_F90 set to gfortran (previously undefined) | |
| == 2022-07-25 11:13:50,443 environment.py:91 INFO Environment variable EBVAROMPI_F90 set to gfortran (previously undefined) | |
| == 2022-07-25 11:13:50,443 environment.py:91 INFO Environment variable OMPI_FC set to gfortran (previously undefined) | |
| == 2022-07-25 11:13:50,443 environment.py:91 INFO Environment variable EBVAROMPI_FC set to gfortran (previously undefined) | |
| == 2022-07-25 11:13:50,443 environment.py:91 INFO Environment variable OPTFLAGS set to -O2 -ftree-vectorize -march=native (previously undefined) | |
| == 2022-07-25 11:13:50,443 environment.py:91 INFO Environment variable EBVAROPTFLAGS set to -O2 -ftree-vectorize -march=native (previously undefined) | |
| == 2022-07-25 11:13:50,443 environment.py:91 INFO Environment variable PRECFLAGS set to -fno-math-errno (previously undefined) | |
| == 2022-07-25 11:13:50,443 environment.py:91 INFO Environment variable EBVARPRECFLAGS set to -fno-math-errno (previously undefined) | |
| == 2022-07-25 11:13:50,443 environment.py:91 INFO Environment variable SCALAPACK_INC_DIR set to (previously undefined) | |
| == 2022-07-25 11:13:50,444 environment.py:91 INFO Environment variable EBVARSCALAPACK_INC_DIR set to (previously undefined) | |
| == 2022-07-25 11:13:50,444 environment.py:91 INFO Environment variable SCALAPACK_LIB_DIR set to /cvmfs/pilot.eessi-hpc.org/versions/2021.12/software/linux/x86_64/amd/zen2/software/ScaLAPACK/2.1.0-gompi-2021a-fb/lib (previously undefined) | |
| == 2022-07-25 11:13:50,444 environment.py:91 INFO Environment variable EBVARSCALAPACK_LIB_DIR set to /cvmfs/pilot.eessi-hpc.org/versions/2021.12/software/linux/x86_64/amd/zen2/software/ScaLAPACK/2.1.0-gompi-2021a-fb/lib (previously undefined) | |
| == 2022-07-25 11:13:50,444 environment.py:91 INFO Environment variable SCALAPACK_MT_SHARED_LIBS set to libscalapack.so,libflexiblas.so,libgfortran.so,libpthread.so (previously undefined) | |
| == 2022-07-25 11:13:50,444 environment.py:91 INFO Environment variable EBVARSCALAPACK_MT_SHARED_LIBS set to libscalapack.so,libflexiblas.so,libgfortran.so,libpthread.so (previously undefined) | |
| == 2022-07-25 11:13:50,444 environment.py:91 INFO Environment variable SCALAPACK_MT_STATIC_LIBS set to libscalapack.a,libflexiblas.a,libgfortran.a,libpthread.a (previously undefined) | |
| == 2022-07-25 11:13:50,444 environment.py:91 INFO Environment variable EBVARSCALAPACK_MT_STATIC_LIBS set to libscalapack.a,libflexiblas.a,libgfortran.a,libpthread.a (previously undefined) | |
| == 2022-07-25 11:13:50,444 environment.py:91 INFO Environment variable SCALAPACK_SHARED_LIBS set to libscalapack.so,libflexiblas.so,libgfortran.so (previously undefined) | |
| == 2022-07-25 11:13:50,444 environment.py:91 INFO Environment variable EBVARSCALAPACK_SHARED_LIBS set to libscalapack.so,libflexiblas.so,libgfortran.so (previously undefined) | |
| == 2022-07-25 11:13:50,445 environment.py:91 INFO Environment variable SCALAPACK_STATIC_LIBS set to libscalapack.a,libflexiblas.a,libgfortran.a (previously undefined) | |
| == 2022-07-25 11:13:50,445 environment.py:91 INFO Environment variable EBVARSCALAPACK_STATIC_LIBS set to libscalapack.a,libflexiblas.a,libgfortran.a (previously undefined) | |
| == 2022-07-25 11:13:50,445 environment.py:91 INFO Environment variable CUDA_CACHE_DISABLE set to 0 (previously undefined) | |
| == 2022-07-25 11:13:50,445 environment.py:91 INFO Environment variable CUDA_CACHE_PATH set to /project/def-sponsor00/easybuild/build/LAMMPS/23Jun2022/foss-2021a-kokkos-CUDA-11.3.1/eb-cuda-cache (previously undefined) | |
| == 2022-07-25 11:13:50,445 environment.py:91 INFO Environment variable CUDA_CACHE_MAXSIZE set to 1073741824 (previously undefined) | |
| == 2022-07-25 11:13:50,445 environment.py:91 INFO Environment variable XDG_CACHE_HOME set to /tmp/eb-n2wzmsqx (previously undefined) | |
| == 2022-07-25 11:13:50,445 environment.py:91 INFO Environment variable CMAKE_INCLUDE_PATH set to /cvmfs/pilot.eessi-hpc.org/versions/2021.12/software/linux/x86_64/amd/zen2/software/FlexiBLAS/3.0.4-GCC-10.3.0/include:/cvmfs/pilot.eessi-hpc.org/versions/2021.12/software/linux/x86_64/amd/zen2/software/FlexiBLAS/3.0.4-GCC-10.3.0/include/flexiblas:/cvmfs/pilot.eessi-hpc.org/versions/2021.12/software/linux/x86_64/amd/zen2/software/FFTW/3.3.9-gompi-2021a/include:/project/def-sponsor00/easybuild/software/CUDA/11.3.1/include:/project/def-sponsor00/easybuild/software/NCCL/2.10.3-GCCcore-10.3.0-CUDA-11.3.1/include:/cvmfs/pilot.eessi-hpc.org/versions/2021.12/software/linux/x86_64/amd/zen2/software/Python/3.9.5-GCCcore-10.3.0/include:/project/def-sponsor00/easybuild/software/libpng/1.6.37-GCCcore-10.3.0/include:/project/def-sponsor00/easybuild/software/libjpeg-turbo/2.0.6-GCCcore-10.3.0/include:/project/def-sponsor00/easybuild/software/netCDF/4.8.0-gompi-2021a/include:/project/def-sponsor00/easybuild/software/GSL/2.7-GCC-10.3.0/include:/project/def-sponsor00/easybuild/software/HDF5/1.10.7-gompi-2021a/include:/project/def-sponsor00/easybuild/software/PCRE/8.44-GCCcore-10.3.0/include:/cvmfs/pilot.eessi-hpc.org/versions/2021.12/software/linux/x86_64/amd/zen2/software/libxml2/2.9.10-GCCcore-10.3.0/include:/project/def-sponsor00/easybuild/software/FFmpeg/4.3.2-GCCcore-10.3.0/include:/project/def-sponsor00/easybuild/software/Voro++/0.4.6-GCCcore-10.3.0/include:/project/def-sponsor00/easybuild/software/kim-api/2.2.1-GCCcore-10.3.0/include:/project/def-sponsor00/easybuild/software/Eigen/3.3.9-GCCcore-10.3.0/include:/project/def-sponsor00/easybuild/software/PLUMED/2.7.2-foss-2021a/include:/project/def-sponsor00/easybuild/software/ScaFaCoS/1.0.1-foss-2021a/include:/cvmfs/pilot.eessi-hpc.org/versions/2021.12/software/linux/x86_64/amd/zen2/software/SciPy-bundle/2021.05-foss-2021a/lib/python3.9/site-packages/numpy/core/include:/project/def-sponsor00/easybuild/software/Boost/1.76.0-GCC-10.3.0/include:/project/def-sponsor00/easybuild/software/ICU/69.1-GCCcore-10.3.0/include:/cvmfs/pilot.eessi-hpc.org/versions/2021.12/software/linux/x86_64/amd/zen2/software/pybind11/2.6.2-GCCcore-10.3.0/include:/project/def-sponsor00/easybuild/software/FriBidi/1.0.10-GCCcore-10.3.0/include:/project/def-sponsor00/easybuild/software/X11/20210518-GCCcore-10.3.0/include:/project/def-sponsor00/easybuild/software/fontconfig/2.13.93-GCCcore-10.3.0/include:/project/def-sponsor00/easybuild/software/freetype/2.10.4-GCCcore-10.3.0/include/freetype2:/project/def-sponsor00/easybuild/software/Brotli/1.0.9-GCCcore-10.3.0/include:/cvmfs/pilot.eessi-hpc.org/versions/2021.12/software/linux/x86_64/amd/zen2/software/expat/2.2.9-GCCcore-10.3.0/include:/project/def-sponsor00/easybuild/software/x265/3.5-GCCcore-10.3.0/include:/project/def-sponsor00/easybuild/software/LAME/3.100-GCCcore-10.3.0/include:/project/def-sponsor00/easybuild/software/x264/20210414-GCCcore-10.3.0/include:/cvmfs/pilot.eessi-hpc.org/versions/2021.12/software/linux/x86_64/amd/zen2/software/libxml2/2.9.10-GCCcore-10.3.0/include/libxml2:/project/def-sponsor00/easybuild/software/Szip/2.1.1-GCCcore-10.3.0/include:/project/def-sponsor00/easybuild/software/GDRCopy/2.2-GCCcore-10.3.0/include:/project/def-sponsor00/easybuild/software/CUDA/11.3.1/nvvm/include:/project/def-sponsor00/easybuild/software/CUDA/11.3.1/extras/CUPTI/include:/cvmfs/pilot.eessi-hpc.org/versions/2021.12/software/linux/x86_64/amd/zen2/software/libffi/3.3-GCCcore-10.3.0/include:/cvmfs/pilot.eessi-hpc.org/versions/2021.12/software/linux/x86_64/amd/zen2/software/GMP/6.2.1-GCCcore-10.3.0/include:/cvmfs/pilot.eessi-hpc.org/versions/2021.12/software/linux/x86_64/amd/zen2/software/SQLite/3.35.4-GCCcore-10.3.0/include:/cvmfs/pilot.eessi-hpc.org/versions/2021.12/software/linux/x86_64/amd/zen2/software/Tcl/8.6.11-GCCcore-10.3.0/include:/cvmfs/pilot.eessi-hpc.org/versions/2021.12/software/linux/x86_64/amd/zen2/software/libarchive/3.5.1-GCCcore-10.3.0/include:/cvmfs/pilot.eessi-hpc.org/versions/2021.12/software/linux/x86_64/amd/zen2/software/OpenBLAS/0.3.15-GCC-10.3.0/include:/project/def-sponsor00/easybuild/software/OpenMPI/4.1.1-GCC-10.3.0/include:/cvmfs/pilot.eessi-hpc.org/versions/2021.12/software/linux/x86_64/amd/zen2/software/PMIx/3.2.3-GCCcore-10.3.0/include:/cvmfs/pilot.eessi-hpc.org/versions/2021.12/software/linux/x86_64/amd/zen2/software/libfabric/1.12.1-GCCcore-10.3.0/include:/cvmfs/pilot.eessi-hpc.org/versions/2021.12/software/linux/x86_64/amd/zen2/software/UCX/1.10.0-GCCcore-10.3.0/include:/cvmfs/pilot.eessi-hpc.org/versions/2021.12/software/linux/x86_64/amd/zen2/software/libevent/2.1.12-GCCcore-10.3.0/include:/cvmfs/pilot.eessi-hpc.org/versions/2021.12/software/linux/x86_64/amd/zen2/software/OpenSSL/1.1/include:/cvmfs/pilot.eessi-hpc.org/versions/2021.12/software/linux/x86_64/amd/zen2/software/hwloc/2.4.1-GCCcore-10.3.0/include:/cvmfs/pilot.eessi-hpc.org/versions/2021.12/software/linux/x86_64/amd/zen2/software/libpciaccess/0.16-GCCcore-10.3.0/include:/cvmfs/pilot.eessi-hpc.org/versions/2021.12/software/linux/x86_64/amd/zen2/software/numactl/2.0.14-GCCcore-10.3.0/include (previously undefined) | |
| == 2022-07-25 11:13:50,445 environment.py:91 INFO Environment variable CTEST_OUTPUT_ON_FAILURE set to True (previously undefined) | |
| == 2022-07-25 11:13:50,446 easyblock.py:2947 INFO Checking RPATH linkage for binaries/libraries... | |
| == 2022-07-25 11:13:50,447 environment.py:112 INFO Unsetting environment variable LD_LIBRARY_PATH (value: /opt/software/slurm/lib64) | |
| == 2022-07-25 11:13:50,684 easyblock.py:2965 INFO Using default subdirectories for binaries/libraries to verify RPATH linking: ('bin', 'lib', 'lib64') | |
| == 2022-07-25 11:13:50,685 run.py:233 INFO running cmd: file /project/def-sponsor00/easybuild/software/LAMMPS/23Jun2022-foss-2021a-kokkos-CUDA-11.3.1/bin/lmp | |
| == 2022-07-25 11:13:50,699 run.py:233 INFO running cmd: ldd /project/def-sponsor00/easybuild/software/LAMMPS/23Jun2022-foss-2021a-kokkos-CUDA-11.3.1/bin/lmp | |
| == 2022-07-25 11:13:50,789 run.py:233 INFO running cmd: readelf -d /project/def-sponsor00/easybuild/software/LAMMPS/23Jun2022-foss-2021a-kokkos-CUDA-11.3.1/bin/lmp | |
| == 2022-07-25 11:13:50,813 run.py:233 INFO running cmd: file /project/def-sponsor00/easybuild/software/LAMMPS/23Jun2022-foss-2021a-kokkos-CUDA-11.3.1/bin/binary2txt | |
| == 2022-07-25 11:13:50,826 run.py:233 INFO running cmd: ldd /project/def-sponsor00/easybuild/software/LAMMPS/23Jun2022-foss-2021a-kokkos-CUDA-11.3.1/bin/binary2txt | |
| == 2022-07-25 11:13:50,875 run.py:233 INFO running cmd: readelf -d /project/def-sponsor00/easybuild/software/LAMMPS/23Jun2022-foss-2021a-kokkos-CUDA-11.3.1/bin/binary2txt | |
| == 2022-07-25 11:13:50,889 run.py:233 INFO running cmd: file /project/def-sponsor00/easybuild/software/LAMMPS/23Jun2022-foss-2021a-kokkos-CUDA-11.3.1/bin/stl_bin2txt | |
| == 2022-07-25 11:13:50,903 run.py:233 INFO running cmd: ldd /project/def-sponsor00/easybuild/software/LAMMPS/23Jun2022-foss-2021a-kokkos-CUDA-11.3.1/bin/stl_bin2txt | |
| == 2022-07-25 11:13:50,950 run.py:233 INFO running cmd: readelf -d /project/def-sponsor00/easybuild/software/LAMMPS/23Jun2022-foss-2021a-kokkos-CUDA-11.3.1/bin/stl_bin2txt | |
| == 2022-07-25 11:13:50,962 run.py:233 INFO running cmd: file /project/def-sponsor00/easybuild/software/LAMMPS/23Jun2022-foss-2021a-kokkos-CUDA-11.3.1/bin/chain.x | |
| == 2022-07-25 11:13:50,975 run.py:233 INFO running cmd: ldd /project/def-sponsor00/easybuild/software/LAMMPS/23Jun2022-foss-2021a-kokkos-CUDA-11.3.1/bin/chain.x | |
| == 2022-07-25 11:13:51,024 run.py:233 INFO running cmd: readelf -d /project/def-sponsor00/easybuild/software/LAMMPS/23Jun2022-foss-2021a-kokkos-CUDA-11.3.1/bin/chain.x | |
| == 2022-07-25 11:13:51,037 run.py:233 INFO running cmd: file /project/def-sponsor00/easybuild/software/LAMMPS/23Jun2022-foss-2021a-kokkos-CUDA-11.3.1/bin/micelle2d.x | |
| == 2022-07-25 11:13:51,050 run.py:233 INFO running cmd: ldd /project/def-sponsor00/easybuild/software/LAMMPS/23Jun2022-foss-2021a-kokkos-CUDA-11.3.1/bin/micelle2d.x | |
| == 2022-07-25 11:13:51,092 run.py:233 INFO running cmd: readelf -d /project/def-sponsor00/easybuild/software/LAMMPS/23Jun2022-foss-2021a-kokkos-CUDA-11.3.1/bin/micelle2d.x | |
| == 2022-07-25 11:13:51,105 run.py:233 INFO running cmd: file /project/def-sponsor00/easybuild/software/LAMMPS/23Jun2022-foss-2021a-kokkos-CUDA-11.3.1/bin/msi2lmp | |
| == 2022-07-25 11:13:51,117 run.py:233 INFO running cmd: ldd /project/def-sponsor00/easybuild/software/LAMMPS/23Jun2022-foss-2021a-kokkos-CUDA-11.3.1/bin/msi2lmp | |
| == 2022-07-25 11:13:51,159 run.py:233 INFO running cmd: readelf -d /project/def-sponsor00/easybuild/software/LAMMPS/23Jun2022-foss-2021a-kokkos-CUDA-11.3.1/bin/msi2lmp | |
| == 2022-07-25 11:13:51,172 run.py:233 INFO running cmd: file /project/def-sponsor00/easybuild/software/LAMMPS/23Jun2022-foss-2021a-kokkos-CUDA-11.3.1/bin/nvcc_wrapper | |
| == 2022-07-25 11:13:51,189 run.py:233 INFO running cmd: file /project/def-sponsor00/easybuild/software/LAMMPS/23Jun2022-foss-2021a-kokkos-CUDA-11.3.1/bin/hpcbind | |
| == 2022-07-25 11:13:51,207 run.py:233 INFO running cmd: file /project/def-sponsor00/easybuild/software/LAMMPS/23Jun2022-foss-2021a-kokkos-CUDA-11.3.1/bin/kokkos_launch_compiler | |
| == 2022-07-25 11:13:51,225 run.py:233 INFO running cmd: file /project/def-sponsor00/easybuild/software/LAMMPS/23Jun2022-foss-2021a-kokkos-CUDA-11.3.1/lib/liblammps.so.0 | |
| == 2022-07-25 11:13:51,239 run.py:233 INFO running cmd: ldd /project/def-sponsor00/easybuild/software/LAMMPS/23Jun2022-foss-2021a-kokkos-CUDA-11.3.1/lib/liblammps.so.0 | |
| == 2022-07-25 11:13:51,323 run.py:233 INFO running cmd: readelf -d /project/def-sponsor00/easybuild/software/LAMMPS/23Jun2022-foss-2021a-kokkos-CUDA-11.3.1/lib/liblammps.so.0 | |
| == 2022-07-25 11:13:51,351 run.py:233 INFO running cmd: file /project/def-sponsor00/easybuild/software/LAMMPS/23Jun2022-foss-2021a-kokkos-CUDA-11.3.1/lib/liblammps.so | |
| == 2022-07-25 11:13:51,363 run.py:233 INFO running cmd: file /project/def-sponsor00/easybuild/software/LAMMPS/23Jun2022-foss-2021a-kokkos-CUDA-11.3.1/lib/pkgconfig | |
| == 2022-07-25 11:13:51,376 run.py:233 INFO running cmd: file /project/def-sponsor00/easybuild/software/LAMMPS/23Jun2022-foss-2021a-kokkos-CUDA-11.3.1/lib/cmake | |
| == 2022-07-25 11:13:51,387 run.py:233 INFO running cmd: file /project/def-sponsor00/easybuild/software/LAMMPS/23Jun2022-foss-2021a-kokkos-CUDA-11.3.1/lib/python3.9 | |
| == 2022-07-25 11:13:51,399 run.py:233 INFO running cmd: file /project/def-sponsor00/easybuild/software/LAMMPS/23Jun2022-foss-2021a-kokkos-CUDA-11.3.1/lib/libkokkoscore.a | |
| == 2022-07-25 11:13:51,415 run.py:233 INFO running cmd: file /project/def-sponsor00/easybuild/software/LAMMPS/23Jun2022-foss-2021a-kokkos-CUDA-11.3.1/lib/libkokkoscontainers.a | |
| == 2022-07-25 11:13:51,429 run.py:233 INFO running cmd: file /project/def-sponsor00/easybuild/software/LAMMPS/23Jun2022-foss-2021a-kokkos-CUDA-11.3.1/lib64/liblammps.so.0 | |
| == 2022-07-25 11:13:51,442 run.py:233 INFO running cmd: ldd /project/def-sponsor00/easybuild/software/LAMMPS/23Jun2022-foss-2021a-kokkos-CUDA-11.3.1/lib64/liblammps.so.0 | |
| == 2022-07-25 11:13:51,523 run.py:233 INFO running cmd: readelf -d /project/def-sponsor00/easybuild/software/LAMMPS/23Jun2022-foss-2021a-kokkos-CUDA-11.3.1/lib64/liblammps.so.0 | |
| == 2022-07-25 11:13:51,544 run.py:233 INFO running cmd: file /project/def-sponsor00/easybuild/software/LAMMPS/23Jun2022-foss-2021a-kokkos-CUDA-11.3.1/lib64/liblammps.so | |
| == 2022-07-25 11:13:51,556 run.py:233 INFO running cmd: file /project/def-sponsor00/easybuild/software/LAMMPS/23Jun2022-foss-2021a-kokkos-CUDA-11.3.1/lib64/pkgconfig | |
| == 2022-07-25 11:13:51,569 run.py:233 INFO running cmd: file /project/def-sponsor00/easybuild/software/LAMMPS/23Jun2022-foss-2021a-kokkos-CUDA-11.3.1/lib64/cmake | |
| == 2022-07-25 11:13:51,581 run.py:233 INFO running cmd: file /project/def-sponsor00/easybuild/software/LAMMPS/23Jun2022-foss-2021a-kokkos-CUDA-11.3.1/lib64/python3.9 | |
| == 2022-07-25 11:13:51,593 run.py:233 INFO running cmd: file /project/def-sponsor00/easybuild/software/LAMMPS/23Jun2022-foss-2021a-kokkos-CUDA-11.3.1/lib64/libkokkoscore.a | |
| == 2022-07-25 11:13:51,606 run.py:233 INFO running cmd: file /project/def-sponsor00/easybuild/software/LAMMPS/23Jun2022-foss-2021a-kokkos-CUDA-11.3.1/lib64/libkokkoscontainers.a | |
| == 2022-07-25 11:13:51,618 environment.py:127 INFO Restoring environment variable LD_LIBRARY_PATH (value: /opt/software/slurm/lib64) | |
| == 2022-07-25 11:13:51,670 build_log.py:169 ERROR EasyBuild crashed with an error (at easybuild/software/EasyBuild/4.5.5/lib/python3.9/site-packages/easybuild/base/exceptions.py:124 in __init__): Sanity check failed: sanity check command cd /tmp/eb-n2wzmsqx/tmpzjmf5n5w && mpirun -n 1 python -c 'from lammps import lammps; l=lammps(); l.file("/project/def-sponsor00/easybuild/software/LAMMPS/23Jun2022-foss-2021a-kokkos-CUDA-11.3.1/examples/atm/in.atm")' exited with code 1 (output: Traceback (most recent call last): | |
| File "<string>", line 1, in <module> | |
| File "/project/def-sponsor00/easybuild/software/LAMMPS/23Jun2022-foss-2021a-kokkos-CUDA-11.3.1/lib/python3.9/site-packages/lammps/core.py", line 150, in __init__ | |
| self.lib = CDLL(libpath,RTLD_GLOBAL) | |
| File "/cvmfs/pilot.eessi-hpc.org/versions/2021.12/software/linux/x86_64/amd/zen2/software/Python/3.9.5-GCCcore-10.3.0/lib/python3.9/ctypes/__init__.py", line 374, in __init__ | |
| self._handle = _dlopen(self._name, mode) | |
| OSError: liblammps.so: cannot open shared object file: No such file or directory | |
| -------------------------------------------------------------------------- | |
| Primary job terminated normally, but 1 process returned | |
| a non-zero exit code. Per user-direction, the job has been aborted. | |
| -------------------------------------------------------------------------- | |
| -------------------------------------------------------------------------- | |
| mpirun detected that one or more processes exited with non-zero status, thus causing | |
| the job to be terminated. The first process to do so was: | |
| Process name: [[35234,1],0] | |
| Exit code: 1 | |
| -------------------------------------------------------------------------- | |
| ) | |
| sanity check command cd /tmp/eb-n2wzmsqx/tmpzjmf5n5w && mpirun -n 1 python -c 'from lammps import lammps; l=lammps(); l.file("/project/def-sponsor00/easybuild/software/LAMMPS/23Jun2022-foss-2021a-kokkos-CUDA-11.3.1/examples/balance/in.balance")' exited with code 1 (output: Traceback (most recent call last): | |
| File "<string>", line 1, in <module> | |
| File "/project/def-sponsor00/easybuild/software/LAMMPS/23Jun2022-foss-2021a-kokkos-CUDA-11.3.1/lib/python3.9/site-packages/lammps/core.py", line 150, in __init__ | |
| self.lib = CDLL(libpath,RTLD_GLOBAL) | |
| File "/cvmfs/pilot.eessi-hpc.org/versions/2021.12/software/linux/x86_64/amd/zen2/software/Python/3.9.5-GCCcore-10.3.0/lib/python3.9/ctypes/__init__.py", line 374, in __init__ | |
| self._handle = _dlopen(self._name, mode) | |
| OSError: liblammps.so: cannot open shared object file: No such file or directory | |
| -------------------------------------------------------------------------- | |
| Primary job terminated normally, but 1 process returned | |
| a non-zero exit code. Per user-direction, the job has been aborted. | |
| -------------------------------------------------------------------------- | |
| -------------------------------------------------------------------------- | |
| mpirun detected that one or more processes exited with non-zero status, thus causing | |
| the job to be terminated. The first process to do so was: | |
| Process name: [[35257,1],0] | |
| Exit code: 1 | |
| -------------------------------------------------------------------------- | |
| ) | |
| sanity check command cd /tmp/eb-n2wzmsqx/tmpzjmf5n5w && mpirun -n 1 python -c 'from lammps import lammps; l=lammps(); l.file("/project/def-sponsor00/easybuild/software/LAMMPS/23Jun2022-foss-2021a-kokkos-CUDA-11.3.1/examples/colloid/in.colloid")' exited with code 1 (output: Traceback (most recent call last): | |
| File "<string>", line 1, in <module> | |
| File "/project/def-sponsor00/easybuild/software/LAMMPS/23Jun2022-foss-2021a-kokkos-CUDA-11.3.1/lib/python3.9/site-packages/lammps/core.py", line 150, in __init__ | |
| self.lib = CDLL(libpath,RTLD_GLOBAL) | |
| File "/cvmfs/pilot.eessi-hpc.org/versions/2021.12/software/linux/x86_64/amd/zen2/software/Python/3.9.5-GCCcore-10.3.0/lib/python3.9/ctypes/__init__.py", line 374, in __init__ | |
| self._handle = _dlopen(self._name, mode) | |
| OSError: liblammps.so: cannot open shared object file: No such file or directory | |
| -------------------------------------------------------------------------- | |
| Primary job terminated normally, but 1 process returned | |
| a non-zero exit code. Per user-direction, the job has been aborted. | |
| -------------------------------------------------------------------------- | |
| -------------------------------------------------------------------------- | |
| mpirun detected that one or more processes exited with non-zero status, thus causing | |
| the job to be terminated. The first process to do so was: | |
| Process name: [[35260,1],0] | |
| Exit code: 1 | |
| -------------------------------------------------------------------------- | |
| ) | |
| sanity check command cd /tmp/eb-n2wzmsqx/tmpzjmf5n5w && mpirun -n 1 python -c 'from lammps import lammps; l=lammps(); l.file("/project/def-sponsor00/easybuild/software/LAMMPS/23Jun2022-foss-2021a-kokkos-CUDA-11.3.1/examples/crack/in.crack")' exited with code 1 (output: Traceback (most recent call last): | |
| File "<string>", line 1, in <module> | |
| File "/project/def-sponsor00/easybuild/software/LAMMPS/23Jun2022-foss-2021a-kokkos-CUDA-11.3.1/lib/python3.9/site-packages/lammps/core.py", line 150, in __init__ | |
| self.lib = CDLL(libpath,RTLD_GLOBAL) | |
| File "/cvmfs/pilot.eessi-hpc.org/versions/2021.12/software/linux/x86_64/amd/zen2/software/Python/3.9.5-GCCcore-10.3.0/lib/python3.9/ctypes/__init__.py", line 374, in __init__ | |
| self._handle = _dlopen(self._name, mode) | |
| OSError: liblammps.so: cannot open shared object file: No such file or directory | |
| -------------------------------------------------------------------------- | |
| Primary job terminated normally, but 1 process returned | |
| a non-zero exit code. Per user-direction, the job has been aborted. | |
| -------------------------------------------------------------------------- | |
| -------------------------------------------------------------------------- | |
| mpirun detected that one or more processes exited with non-zero status, thus causing | |
| the job to be terminated. The first process to do so was: | |
| Process name: [[35251,1],0] | |
| Exit code: 1 | |
| -------------------------------------------------------------------------- | |
| ) | |
| sanity check command cd /tmp/eb-n2wzmsqx/tmpzjmf5n5w && mpirun -n 1 python -c 'from lammps import lammps; l=lammps(); l.file("/project/def-sponsor00/easybuild/software/LAMMPS/23Jun2022-foss-2021a-kokkos-CUDA-11.3.1/examples/dipole/in.dipole")' exited with code 1 (output: Traceback (most recent call last): | |
| File "<string>", line 1, in <module> | |
| File "/project/def-sponsor00/easybuild/software/LAMMPS/23Jun2022-foss-2021a-kokkos-CUDA-11.3.1/lib/python3.9/site-packages/lammps/core.py", line 150, in __init__ | |
| self.lib = CDLL(libpath,RTLD_GLOBAL) | |
| File "/cvmfs/pilot.eessi-hpc.org/versions/2021.12/software/linux/x86_64/amd/zen2/software/Python/3.9.5-GCCcore-10.3.0/lib/python3.9/ctypes/__init__.py", line 374, in __init__ | |
| self._handle = _dlopen(self._name, mode) | |
| OSError: liblammps.so: cannot open shared object file: No such file or directory | |
| -------------------------------------------------------------------------- | |
| Primary job terminated normally, but 1 process returned | |
| a non-zero exit code. Per user-direction, the job has been aborted. | |
| -------------------------------------------------------------------------- | |
| -------------------------------------------------------------------------- | |
| mpirun detected that one or more processes exited with non-zero status, thus causing | |
| the job to be terminated. The first process to do so was: | |
| Process name: [[35254,1],0] | |
| Exit code: 1 | |
| -------------------------------------------------------------------------- | |
| ) | |
| sanity check command cd /tmp/eb-n2wzmsqx/tmpzjmf5n5w && mpirun -n 1 python -c 'from lammps import lammps; l=lammps(); l.file("/project/def-sponsor00/easybuild/software/LAMMPS/23Jun2022-foss-2021a-kokkos-CUDA-11.3.1/examples/friction/in.friction")' exited with code 1 (output: Traceback (most recent call last): | |
| File "<string>", line 1, in <module> | |
| File "/project/def-sponsor00/easybuild/software/LAMMPS/23Jun2022-foss-2021a-kokkos-CUDA-11.3.1/lib/python3.9/site-packages/lammps/core.py", line 150, in __init__ | |
| self.lib = CDLL(libpath,RTLD_GLOBAL) | |
| File "/cvmfs/pilot.eessi-hpc.org/versions/2021.12/software/linux/x86_64/amd/zen2/software/Python/3.9.5-GCCcore-10.3.0/lib/python3.9/ctypes/__init__.py", line 374, in __init__ | |
| self._handle = _dlopen(self._name, mode) | |
| OSError: liblammps.so: cannot open shared object file: No such file or directory | |
| -------------------------------------------------------------------------- | |
| Primary job terminated normally, but 1 process returned | |
| a non-zero exit code. Per user-direction, the job has been aborted. | |
| -------------------------------------------------------------------------- | |
| -------------------------------------------------------------------------- | |
| mpirun detected that one or more processes exited with non-zero status, thus causing | |
| the job to be terminated. The first process to do so was: | |
| Process name: [[35212,1],0] | |
| Exit code: 1 | |
| -------------------------------------------------------------------------- | |
| ) | |
| sanity check command cd /tmp/eb-n2wzmsqx/tmpzjmf5n5w && mpirun -n 1 python -c 'from lammps import lammps; l=lammps(); l.file("/project/def-sponsor00/easybuild/software/LAMMPS/23Jun2022-foss-2021a-kokkos-CUDA-11.3.1/examples/hugoniostat/in.hugoniostat")' exited with code 1 (output: Traceback (most recent call last): | |
| File "<string>", line 1, in <module> | |
| File "/project/def-sponsor00/easybuild/software/LAMMPS/23Jun2022-foss-2021a-kokkos-CUDA-11.3.1/lib/python3.9/site-packages/lammps/core.py", line 150, in __init__ | |
| self.lib = CDLL(libpath,RTLD_GLOBAL) | |
| File "/cvmfs/pilot.eessi-hpc.org/versions/2021.12/software/linux/x86_64/amd/zen2/software/Python/3.9.5-GCCcore-10.3.0/lib/python3.9/ctypes/__init__.py", line 374, in __init__ | |
| self._handle = _dlopen(self._name, mode) | |
| OSError: liblammps.so: cannot open shared object file: No such file or directory | |
| -------------------------------------------------------------------------- | |
| Primary job terminated normally, but 1 process returned | |
| a non-zero exit code. Per user-direction, the job has been aborted. | |
| -------------------------------------------------------------------------- | |
| -------------------------------------------------------------------------- | |
| mpirun detected that one or more processes exited with non-zero status, thus causing | |
| the job to be terminated. The first process to do so was: | |
| Process name: [[35203,1],0] | |
| Exit code: 1 | |
| -------------------------------------------------------------------------- | |
| ) | |
| sanity check command cd /tmp/eb-n2wzmsqx/tmpzjmf5n5w && mpirun -n 1 python -c 'from lammps import lammps; l=lammps(); l.file("/project/def-sponsor00/easybuild/software/LAMMPS/23Jun2022-foss-2021a-kokkos-CUDA-11.3.1/examples/indent/in.indent")' exited with code 1 (output: Traceback (most recent call last): | |
| File "<string>", line 1, in <module> | |
| File "/project/def-sponsor00/easybuild/software/LAMMPS/23Jun2022-foss-2021a-kokkos-CUDA-11.3.1/lib/python3.9/site-packages/lammps/core.py", line 150, in __init__ | |
| self.lib = CDLL(libpath,RTLD_GLOBAL) | |
| File "/cvmfs/pilot.eessi-hpc.org/versions/2021.12/software/linux/x86_64/amd/zen2/software/Python/3.9.5-GCCcore-10.3.0/lib/python3.9/ctypes/__init__.py", line 374, in __init__ | |
| self._handle = _dlopen(self._name, mode) | |
| OSError: liblammps.so: cannot open shared object file: No such file or directory | |
| -------------------------------------------------------------------------- | |
| Primary job terminated normally, but 1 process returned | |
| a non-zero exit code. Per user-direction, the job has been aborted. | |
| -------------------------------------------------------------------------- | |
| -------------------------------------------------------------------------- | |
| mpirun detected that one or more processes exited with non-zero status, thus causing | |
| the job to be terminated. The first process to do so was: | |
| Process name: [[35206,1],0] | |
| Exit code: 1 | |
| -------------------------------------------------------------------------- | |
| ) | |
| sanity check command cd /tmp/eb-n2wzmsqx/tmpzjmf5n5w && mpirun -n 1 python -c 'from lammps import lammps; l=lammps(); l.file("/project/def-sponsor00/easybuild/software/LAMMPS/23Jun2022-foss-2021a-kokkos-CUDA-11.3.1/examples/melt/in.melt")' exited with code 1 (output: Traceback (most recent call last): | |
| File "<string>", line 1, in <module> | |
| File "/project/def-sponsor00/easybuild/software/LAMMPS/23Jun2022-foss-2021a-kokkos-CUDA-11.3.1/lib/python3.9/site-packages/lammps/core.py", line 150, in __init__ | |
| self.lib = CDLL(libpath,RTLD_GLOBAL) | |
| File "/cvmfs/pilot.eessi-hpc.org/versions/2021.12/software/linux/x86_64/amd/zen2/software/Python/3.9.5-GCCcore-10.3.0/lib/python3.9/ctypes/__init__.py", line 374, in __init__ | |
| self._handle = _dlopen(self._name, mode) | |
| OSError: liblammps.so: cannot open shared object file: No such file or directory | |
| -------------------------------------------------------------------------- | |
| Primary job terminated normally, but 1 process returned | |
| a non-zero exit code. Per user-direction, the job has been aborted. | |
| -------------------------------------------------------------------------- | |
| -------------------------------------------------------------------------- | |
| mpirun detected that one or more processes exited with non-zero status, thus causing | |
| the job to be terminated. The first process to do so was: | |
| Process name: [[35229,1],0] | |
| Exit code: 1 | |
| -------------------------------------------------------------------------- | |
| ) | |
| sanity check command cd /tmp/eb-n2wzmsqx/tmpzjmf5n5w && mpirun -n 1 python -c 'from lammps import lammps; l=lammps(); l.file("/project/def-sponsor00/easybuild/software/LAMMPS/23Jun2022-foss-2021a-kokkos-CUDA-11.3.1/examples/min/in.min")' exited with code 1 (output: Traceback (most recent call last): | |
| File "<string>", line 1, in <module> | |
| File "/project/def-sponsor00/easybuild/software/LAMMPS/23Jun2022-foss-2021a-kokkos-CUDA-11.3.1/lib/python3.9/site-packages/lammps/core.py", line 150, in __init__ | |
| self.lib = CDLL(libpath,RTLD_GLOBAL) | |
| File "/cvmfs/pilot.eessi-hpc.org/versions/2021.12/software/linux/x86_64/amd/zen2/software/Python/3.9.5-GCCcore-10.3.0/lib/python3.9/ctypes/__init__.py", line 374, in __init__ | |
| self._handle = _dlopen(self._name, mode) | |
| OSError: liblammps.so: cannot open shared object file: No such file or directory | |
| -------------------------------------------------------------------------- | |
| Primary job terminated normally, but 1 process returned | |
| a non-zero exit code. Per user-direction, the job has been aborted. | |
| -------------------------------------------------------------------------- | |
| -------------------------------------------------------------------------- | |
| mpirun detected that one or more processes exited with non-zero status, thus causing | |
| the job to be terminated. The first process to do so was: | |
| Process name: [[35216,1],0] | |
| Exit code: 1 | |
| -------------------------------------------------------------------------- | |
| ) | |
| sanity check command cd /tmp/eb-n2wzmsqx/tmpzjmf5n5w && mpirun -n 1 python -c 'from lammps import lammps; l=lammps(); l.file("/project/def-sponsor00/easybuild/software/LAMMPS/23Jun2022-foss-2021a-kokkos-CUDA-11.3.1/examples/msst/in.msst")' exited with code 1 (output: Traceback (most recent call last): | |
| File "<string>", line 1, in <module> | |
| File "/project/def-sponsor00/easybuild/software/LAMMPS/23Jun2022-foss-2021a-kokkos-CUDA-11.3.1/lib/python3.9/site-packages/lammps/core.py", line 150, in __init__ | |
| self.lib = CDLL(libpath,RTLD_GLOBAL) | |
| File "/cvmfs/pilot.eessi-hpc.org/versions/2021.12/software/linux/x86_64/amd/zen2/software/Python/3.9.5-GCCcore-10.3.0/lib/python3.9/ctypes/__init__.py", line 374, in __init__ | |
| self._handle = _dlopen(self._name, mode) | |
| OSError: liblammps.so: cannot open shared object file: No such file or directory | |
| -------------------------------------------------------------------------- | |
| Primary job terminated normally, but 1 process returned | |
| a non-zero exit code. Per user-direction, the job has been aborted. | |
| -------------------------------------------------------------------------- | |
| -------------------------------------------------------------------------- | |
| mpirun detected that one or more processes exited with non-zero status, thus causing | |
| the job to be terminated. The first process to do so was: | |
| Process name: [[35223,1],0] | |
| Exit code: 1 | |
| -------------------------------------------------------------------------- | |
| ) | |
| sanity check command cd /tmp/eb-n2wzmsqx/tmpzjmf5n5w && mpirun -n 1 python -c 'from lammps import lammps; l=lammps(); l.file("/project/def-sponsor00/easybuild/software/LAMMPS/23Jun2022-foss-2021a-kokkos-CUDA-11.3.1/examples/nemd/in.nemd")' exited with code 1 (output: Traceback (most recent call last): | |
| File "<string>", line 1, in <module> | |
| File "/project/def-sponsor00/easybuild/software/LAMMPS/23Jun2022-foss-2021a-kokkos-CUDA-11.3.1/lib/python3.9/site-packages/lammps/core.py", line 150, in __init__ | |
| self.lib = CDLL(libpath,RTLD_GLOBAL) | |
| File "/cvmfs/pilot.eessi-hpc.org/versions/2021.12/software/linux/x86_64/amd/zen2/software/Python/3.9.5-GCCcore-10.3.0/lib/python3.9/ctypes/__init__.py", line 374, in __init__ | |
| self._handle = _dlopen(self._name, mode) | |
| OSError: liblammps.so: cannot open shared object file: No such file or directory | |
| -------------------------------------------------------------------------- | |
| Primary job terminated normally, but 1 process returned | |
| a non-zero exit code. Per user-direction, the job has been aborted. | |
| -------------------------------------------------------------------------- | |
| -------------------------------------------------------------------------- | |
| mpirun detected that one or more processes exited with non-zero status, thus causing | |
| the job to be terminated. The first process to do so was: | |
| Process name: [[35306,1],0] | |
| Exit code: 1 | |
| -------------------------------------------------------------------------- | |
| ) | |
| sanity check command cd /tmp/eb-n2wzmsqx/tmpzjmf5n5w && mpirun -n 1 python -c 'from lammps import lammps; l=lammps(); l.file("/project/def-sponsor00/easybuild/software/LAMMPS/23Jun2022-foss-2021a-kokkos-CUDA-11.3.1/examples/obstacle/in.obstacle")' exited with code 1 (output: Traceback (most recent call last): | |
| File "<string>", line 1, in <module> | |
| File "/project/def-sponsor00/easybuild/software/LAMMPS/23Jun2022-foss-2021a-kokkos-CUDA-11.3.1/lib/python3.9/site-packages/lammps/core.py", line 150, in __init__ | |
| self.lib = CDLL(libpath,RTLD_GLOBAL) | |
| File "/cvmfs/pilot.eessi-hpc.org/versions/2021.12/software/linux/x86_64/amd/zen2/software/Python/3.9.5-GCCcore-10.3.0/lib/python3.9/ctypes/__init__.py", line 374, in __init__ | |
| self._handle = _dlopen(self._name, mode) | |
| OSError: liblammps.so: cannot open shared object file: No such file or directory | |
| -------------------------------------------------------------------------- | |
| Primary job terminated normally, but 1 process returned | |
| a non-zero exit code. Per user-direction, the job has been aborted. | |
| -------------------------------------------------------------------------- | |
| -------------------------------------------------------------------------- | |
| mpirun detected that one or more processes exited with non-zero status, thus causing | |
| the job to be terminated. The first process to do so was: | |
| Process name: [[35297,1],0] | |
| Exit code: 1 | |
| -------------------------------------------------------------------------- | |
| ) | |
| sanity check command cd /tmp/eb-n2wzmsqx/tmpzjmf5n5w && mpirun -n 1 python -c 'from lammps import lammps; l=lammps(); l.file("/project/def-sponsor00/easybuild/software/LAMMPS/23Jun2022-foss-2021a-kokkos-CUDA-11.3.1/examples/pour/in.pour")' exited with code 1 (output: Traceback (most recent call last): | |
| File "<string>", line 1, in <module> | |
| File "/project/def-sponsor00/easybuild/software/LAMMPS/23Jun2022-foss-2021a-kokkos-CUDA-11.3.1/lib/python3.9/site-packages/lammps/core.py", line 150, in __init__ | |
| self.lib = CDLL(libpath,RTLD_GLOBAL) | |
| File "/cvmfs/pilot.eessi-hpc.org/versions/2021.12/software/linux/x86_64/amd/zen2/software/Python/3.9.5-GCCcore-10.3.0/lib/python3.9/ctypes/__init__.py", line 374, in __init__ | |
| self._handle = _dlopen(self._name, mode) | |
| OSError: liblammps.so: cannot open shared object file: No such file or directory | |
| -------------------------------------------------------------------------- | |
| Primary job terminated normally, but 1 process returned | |
| a non-zero exit code. Per user-direction, the job has been aborted. | |
| -------------------------------------------------------------------------- | |
| -------------------------------------------------------------------------- | |
| mpirun detected that one or more processes exited with non-zero status, thus causing | |
| the job to be terminated. The first process to do so was: | |
| Process name: [[35300,1],0] | |
| Exit code: 1 | |
| -------------------------------------------------------------------------- | |
| ) | |
| sanity check command cd /tmp/eb-n2wzmsqx/tmpzjmf5n5w && mpirun -n 1 python -c 'from lammps import lammps; l=lammps(); l.file("/project/def-sponsor00/easybuild/software/LAMMPS/23Jun2022-foss-2021a-kokkos-CUDA-11.3.1/examples/voronoi/in.voronoi")' exited with code 1 (output: Traceback (most recent call last): | |
| File "<string>", line 1, in <module> | |
| File "/project/def-sponsor00/easybuild/software/LAMMPS/23Jun2022-foss-2021a-kokkos-CUDA-11.3.1/lib/python3.9/site-packages/lammps/core.py", line 150, in __init__ | |
| self.lib = CDLL(libpath,RTLD_GLOBAL) | |
| File "/cvmfs/pilot.eessi-hpc.org/versions/2021.12/software/linux/x86_64/amd/zen2/software/Python/3.9.5-GCCcore-10.3.0/lib/python3.9/ctypes/__init__.py", line 374, in __init__ | |
| self._handle = _dlopen(self._name, mode) | |
| OSError: liblammps.so: cannot open shared object file: No such file or directory | |
| -------------------------------------------------------------------------- | |
| Primary job terminated normally, but 1 process returned | |
| a non-zero exit code. Per user-direction, the job has been aborted. | |
| -------------------------------------------------------------------------- | |
| -------------------------------------------------------------------------- | |
| mpirun detected that one or more processes exited with non-zero status, thus causing | |
| the job to be terminated. The first process to do so was: | |
| Process name: [[35323,1],0] | |
| Exit code: 1 | |
| -------------------------------------------------------------------------- | |
| ) (at easybuild/software/EasyBuild/4.5.5/lib/python3.9/site-packages/easybuild/framework/easyblock.py:3461 in _sanity_check_step) | |
| == 2022-07-25 11:13:51,671 build_log.py:265 INFO ... (took 7 secs) | |
| == 2022-07-25 11:13:51,674 filetools.py:1983 INFO Removing lock /project/def-sponsor00/easybuild/software/.locks/_project_def-sponsor00_easybuild_software_LAMMPS_23Jun2022-foss-2021a-kokkos-CUDA-11.3.1.lock... | |
| == 2022-07-25 11:13:51,676 filetools.py:382 INFO Path /project/def-sponsor00/easybuild/software/.locks/_project_def-sponsor00_easybuild_software_LAMMPS_23Jun2022-foss-2021a-kokkos-CUDA-11.3.1.lock successfully removed. | |
| == 2022-07-25 11:13:51,676 filetools.py:1987 INFO Lock removed: /project/def-sponsor00/easybuild/software/.locks/_project_def-sponsor00_easybuild_software_LAMMPS_23Jun2022-foss-2021a-kokkos-CUDA-11.3.1.lock | |
| == 2022-07-25 11:13:51,676 easyblock.py:4079 WARNING build failed (first 300 chars): Sanity check failed: sanity check command cd /tmp/eb-n2wzmsqx/tmpzjmf5n5w && mpirun -n 1 python -c 'from lammps import lammps; l=lammps(); l.file("/project/def-sponsor00/easybuild/software/LAMMPS/23Jun2022-foss-2021a-kokkos-CUDA-11.3.1/examples/atm/in.atm")' exited with code 1 (output: Traceback (mo | |
| == 2022-07-25 11:13:51,676 easyblock.py:318 INFO Closing log for application name LAMMPS version 23Jun2022 |
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