Craig Knox cknoxrun
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| # Export PATH variables | |
| export PATH="/usr/local/bin:~/.bin:$PATH" | |
| # Nicer bash defaults | |
| export PS1='\[\e[31;1m\][${LOGNAME}@\h]:\[\e[34m\]\w\[\e[0m\]>' | |
| export PROMPT_COMMAND='if [ "$(id -u)" -ne 0 ]; then echo "$(date "+%Y-%m-%d.%H:%M:%S") $(pwd) $(history 1)" >> ~/.logs/bash-history-$(date "+%Y-%m-%d").log; fi' | |
| export HISTCONTROL=erasedups # Erase duplicates | |
| export HISTSIZE=5000 # resize history size | |
| shopt -s histappend # append to bash_history if Terminal.app quits |
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| brew install mariadb redis sl jq readline git wget chruby ruby-install sift gist bash-completion |
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| { | |
| "auto_complete": true, | |
| "auto_complete_commit_on_tab": true, | |
| "auto_indent": true, | |
| "color_scheme": "Packages/User/SublimeLinter/Monokai (SL).tmTheme", | |
| "create_window_at_startup": false, | |
| "default_encoding": "UTF-8", | |
| "default_line_ending": "unix", | |
| "font_size": 17, | |
| "highlight_line": false, |
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| { | |
| "height": "2.3", | |
| "height_unit": "m", | |
| "weight": "190", | |
| "weight_unit": "lbs", | |
| "current_address": "9044 92 St NW, Edmonton AB Canada", | |
| "occupation": "Programmer", | |
| "highest_education_level": "Undergraduate", | |
| "backgrounds": [ | |
| "", |
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| # Don't hide the navbar if it's collapsed i.e. we're on a phone | |
| if $('.omx-site-navbar') | |
| if $('.navbar-toggle').is(":visible") | |
| $('.navbar').removeClass('transparent') | |
| $('.navbar').addClass('visible') | |
| $('.navbar-brand').show() | |
| # Only toggle the navbar on the home page when it's not collapsed | |
| $(window).scroll -> | |
| if !$('.navbar-toggle').is(":visible") | |
| # Set distance user needs to scroll before we the navbar switches |
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| # Don't hide the navbar if it's collapsed i.e. we're on a phone | |
| if $('.omx-site-navbar') | |
| if $('.navbar-toggle').is(":visible") | |
| $('.navbar').removeClass('transparent') | |
| $('.navbar').addClass('visible') | |
| $('.navbar-brand').show() | |
| # Only toggle the navbar on the home page when it's not collapsed | |
| $(window).scroll -> | |
| if !$('.navbar-toggle').is(":visible") | |
| # Set distance user needs to scroll before we the navbar switches |
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| client = Elasticsearch::Client.new(log: false, host: SMPDB_ES_URL) | |
| hits = [] | |
| search = client.search(index: SMPDB_INDEX, scroll: '5m', body: json) | |
| hits.concat(search['hits']['hits'].map { |hit| SmpdbPathway.new(Hashie::Mash.new(hit['_source'])) }) | |
| # Call the `scroll` API until empty results are returned | |
| while search = client.scroll(scroll_id: search['_scroll_id'], scroll: '5m') and not search['hits']['hits'].blank? do | |
| hits.concat(search['hits']['hits'].map { |hit| SmpdbPathway.new(Hashie::Mash.new(hit['_source'])) }) | |
| end |
cknoxrun
/ update.rake
Created
January 24, 2018 22:36
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| namespace :update do | |
| desc "Upload all Paperclip attachments to S3" | |
| task s3: [:environment] do | |
| models = { | |
| documents: [Document, :file], | |
| ms_ms_peak_assignments: [MsMsPeakAssignment, :assignment_view], | |
| sops: [Sop, :file] | |
| } | |
| models.each do |name, (klass, attachment_method)| | |
| Dir.glob("public/system/#{name}/#{attachment_method.to_s.pluralize}/**/*").reject { |f| File.directory?(f) }.each do |path| |
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| li.nav-item.dropdown | |
| a.nav-link.dropdown-toggle href="#" data-toggle="dropdown" Browse | |
| .dropdown-menu | |
| = link_to "#{c_icon(:drugs)} Drugs".html_safe, main_app.drugs_path, class: 'dropdown-item' | |
| = link_to "#{c_icon(:categories)} Categories".html_safe, main_app.categories_path, class: 'dropdown-item' | |
| = link_to "#{c_icon(:pathways)} Pathways".html_safe, main_app.pathways_path, class: 'dropdown-item' | |
| = link_to "#{c_icon(:reactions)} Drug Reactions".html_safe, main_app.reactions_path, class: 'dropdown-item' | |
| = link_to "#{c_icon(:classifications)} Drug Classification".html_safe, main_app.classyfication_path, class: 'dropdown-item' | |
| / = link_to "#{c_icon(:targets)} Drug Targets".html_safe, main_app.targets_path, class: 'dropdown-item' |
cknoxrun
/ label_fields.rb
Created
October 5, 2019 17:45
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| SECTIONS = { | |
| abuse: '34086-9', | |
| accessories: '60555-0', | |
| active_ingredient: '55106-9', | |
| adverse_reactions: '34084-4', | |
| alarms: '69761-5', | |
| animal_pharmacology_and_or_toxicology: '34091-9', | |
| ask_doctor: '50569-3', | |
| ask_doctor_or_pharmacist: '50568-5', | |
| assembly_or_installation_instructions: '60556-8', |