A quick example showing the interactive API of MyVariant.info

my-variant.ipynb

{
 "cells": [
  {
   "cell_type": "code",
   "execution_count": 11,
   "metadata": {
    "collapsed": false
   },
   "outputs": [
    {
     "data": {
      "text/html": [
       "<div>\n",
       "<style>\n",
       "    .dataframe thead tr:only-child th {\n",
       "        text-align: right;\n",
       "    }\n",
       "\n",
       "    .dataframe thead th {\n",
       "        text-align: left;\n",
       "    }\n",
       "\n",
       "    .dataframe tbody tr th {\n",
       "        vertical-align: top;\n",
       "    }\n",
       "</style>\n",
       "<table border=\"1\" class=\"dataframe\">\n",
       "  <thead>\n",
       "    <tr style=\"text-align: right;\">\n",
       "      <th></th>\n",
       "      <th>_score</th>\n",
       "      <th>cosmic.alt</th>\n",
       "      <th>cosmic.chrom</th>\n",
       "      <th>cosmic.hg19.end</th>\n",
       "      <th>cosmic.hg19.start</th>\n",
       "      <th>cosmic.mut_freq</th>\n",
       "      <th>cosmic.mut_nt</th>\n",
       "    </tr>\n",
       "  </thead>\n",
       "  <tbody>\n",
       "    <tr>\n",
       "      <th>0</th>\n",
       "      <td>10.420403</td>\n",
       "      <td>G</td>\n",
       "      <td>2</td>\n",
       "      <td>24398421</td>\n",
       "      <td>24398421</td>\n",
       "      <td>12.50</td>\n",
       "      <td>C&gt;G</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>1</th>\n",
       "      <td>10.420403</td>\n",
       "      <td>A</td>\n",
       "      <td>17</td>\n",
       "      <td>7097705</td>\n",
       "      <td>7097705</td>\n",
       "      <td>33.33</td>\n",
       "      <td>T&gt;A</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>2</th>\n",
       "      <td>10.420403</td>\n",
       "      <td>T</td>\n",
       "      <td>14</td>\n",
       "      <td>24768183</td>\n",
       "      <td>24768183</td>\n",
       "      <td>14.29</td>\n",
       "      <td>C&gt;T</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>3</th>\n",
       "      <td>10.420403</td>\n",
       "      <td>T</td>\n",
       "      <td>12</td>\n",
       "      <td>9087748</td>\n",
       "      <td>9087748</td>\n",
       "      <td>16.67</td>\n",
       "      <td>C&gt;T</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>4</th>\n",
       "      <td>10.420403</td>\n",
       "      <td>G</td>\n",
       "      <td>24</td>\n",
       "      <td>21628950</td>\n",
       "      <td>21628950</td>\n",
       "      <td>33.33</td>\n",
       "      <td>A&gt;G</td>\n",
       "    </tr>\n",
       "  </tbody>\n",
       "</table>\n",
       "</div>"
      ],
      "text/plain": [
       "      _score cosmic.alt cosmic.chrom  cosmic.hg19.end  cosmic.hg19.start  \\\n",
       "0  10.420403          G            2         24398421           24398421   \n",
       "1  10.420403          A           17          7097705            7097705   \n",
       "2  10.420403          T           14         24768183           24768183   \n",
       "3  10.420403          T           12          9087748            9087748   \n",
       "4  10.420403          G           24         21628950           21628950   \n",
       "\n",
       "   cosmic.mut_freq cosmic.mut_nt  \n",
       "0            12.50           C>G  \n",
       "1            33.33           T>A  \n",
       "2            14.29           C>T  \n",
       "3            16.67           C>T  \n",
       "4            33.33           A>G  "
      ]
     },
     "execution_count": 11,
     "metadata": {},
     "output_type": "execute_result"
    }
   ],
   "source": [
    "import myvariant\n",
    "\n",
    "mv = myvariant.MyVariantInfo()\n",
    "a = mv.query('cosmic.tumor_site:liver', fields='cosmic', as_dataframe=True, size=5)\n",
    "a.iloc[:,[ 1, 3, 4, 6, 7, 8, 9]]"
   ]
  }
 ],
 "metadata": {
  "kernel_info": {
   "name": "python3"
  },
  "kernelspec": {
   "display_name": "Python 3",
   "language": "python",
   "name": "python3"
  },
  "language_info": {
   "codemirror_mode": {
    "name": "ipython",
    "version": 3
   },
   "file_extension": ".py",
   "mimetype": "text/x-python",
   "name": "python",
   "nbconvert_exporter": "python",
   "pygments_lexer": "ipython3",
   "version": "3.6.2"
  }
 },
 "nbformat": 4,
 "nbformat_minor": 2
}