clintval

package com.twinstrandbio.math

import breeze.util.BloomFilter
import com.fulcrumgenomics.commons.util.SimpleCounter

import scala.reflect.runtime.{universe => ru}

/** Methods for counting. */
object Counter {

clintval

1. Go to the video’s URL
2. Right-Click on the video and select “Copy link and thumbnail”
3. Open a notepad and paste the link you just copied.
4. Search for a link that contains ?wvideo=<id>, where the appended <id> is the video identifier code.
5. Copy that the video identifier code in notepad, and append it to this link: http://fast.wistia.net/embed/iframe/<id>
6. Open up a new browser tab using the newly created link, and the video will load full-screen.
7. Use the developers tools to open up and view the source-code of the new video in another tab.
8. Search for the first link/URL that ends in “.bin”
9. Copy and paste that link into a new tab, and then replace the “.bin” with “.mp4”, and hit enter.
10. The video should now be able to download the video.

clintval

#!/usr/bin/env ruby

# gem install active_support
require 'active_support/inflector' 
require 'active_support/core_ext/string'

# gem install webrick (only ruby3) 
require 'webrick' 

# gem install mechanize

clintval

/// A record of output from VarDict/VarDictJava run in amplicon-aware mode.
#[derive(Debug, Deserialize)]
struct AmpliconVariant<'a> {
    pub sample: &'a str,
    pub interval_name: &'a str,
    pub contig: &'a str,
    pub start: u64,
    pub end: u64,
    pub ref_allele: &'a str,

clintval

{
  "name": "md5check",
  "title": "MD5 checksum",
  "summary": "Generate MD5 checksum of one or more files and save the output info in a text file. Hard timeout policy for 10hrs.Use batch input processing or instance of large storage if you have large amount of data to process. Questions go to [email protected]",
  "dxapi": "1.0.0",
  "version": "0.0.1",
  "inputSpec": [
    {
      "name": "i_put",
      "label": "Input File(s)",

clintval

Rasterize Recursively

 ❯ parallel -j4 convert -density 400 +antialias {} {.}.raster.pdf ::: **/*.pdf

clintval

package com.twinstrandbio.collection

import scala.collection.compat._
import scala.collection.{StrictOptimizedIterableOps, mutable}

/** A mutable bi-directional map. There is a 1:1 mapping between keys and values. */
class BiMap[K, V]() extends mutable.Map[K, V]
  with mutable.MapOps[K, V, mutable.Map, BiMap[K, V]]
  with StrictOptimizedIterableOps[(K, V), mutable.Iterable, BiMap[K, V]]  {
  private val forward = mutable.HashMap.empty[K, V]

clintval

export TOKEN=???

curl -s -X GET \
  -H "Content-Type: application/octet-stream" \
  -H "Authorization: Bearer ${TOKEN}" "https://my.qiagendigitalinsights.com/bbp/data/files/cosmic" \
  -o files.txt
  
parallel -k \
  'curl -X GET \
     -H "Content-Type: application/octet-stream" \

clintval

/*
 * The MIT License
 *
 * Copyright © 2022 Clint Valentine
 *
 * Permission is hereby granted, free of charge, to any person obtaining a copy
 * of this software and associated documentation files (the "Software"), to deal
 * in the Software without restriction, including without limitation the rights
 * to use, copy, modify, merge, publish, distribute, sublicense, and/or sell
 * copies of the Software, and to permit persons to whom the Software is

clintval

package io.cvbio.collection

import io.cvbio.io.Io
import com.fulcrumgenomics.commons.collection.SelfClosingIterator

import java.util.concurrent.atomic.AtomicReference
import java.util.concurrent._
import scala.concurrent.duration.{Duration, DurationInt}
import scala.concurrent.{Await, ExecutionContext, Future}