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cnh/cell_counting_tutorial_v0.ipynb

Created May 27, 2022 02:04
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Cell counting tutorial
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cell_counting_tutorial_v0.ipynb
To run this example, we will need to download the Broad Institute BBBC005 dataset from
https://data.broadinstitute.org/bbbc/BBBC005/.
No login or registration is needed to download this dataset,
so the raw images can simply be fetched using
wget https://data.broadinstitute.org/bbbc/BBBC005/BBBC005_v1_images.zip
unzip BBBC005_v1_images.zip
The ground-truth segmentation masks can be fetched using :
wget https://data.broadinstitute.org/bbbc/BBBC005/BBBC005_v1_ground_truth.zip
unzip BBBC005_v1_ground_truth.zip
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