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ctrueden
/ gh-pages-packages.log
Created
August 13, 2020 21:31
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| $ conda create -n gh-pages rb-github-pages | |
| ... | |
| $ conda activate gh-pages | |
| $ conda list | |
| # packages in environment at /usr/local/miniconda3/envs/gh-pages: | |
| # | |
| # Name Version Build Channel | |
| ca-certificates 2019.6.16 hecc5488_0 conda-forge | |
| gdbm 1.18 h0da4bb5_1 conda-forge | |
| gettext 0.19.8.1 h46ab8bc_1002 conda-forge |
ctrueden
/ obsolete-N5-files.txt
Last active
August 3, 2020 22:52
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| jars/api-common-1.8.1.jar -- IS OBSOLETE (Java-8 file is: Fiji-Pristine.app/jars/api-common-1.9.0.jar) | |
| jars/auto-value-annotations-1.7.jar -- IS OBSOLETE (Java-8 file is: Fiji-Pristine.app/jars/auto-value-annotations-1.7.jar) | |
| jars/aws-java-sdk-core-1.11.719.jar -- IS OBSOLETE (Java-8 file is: Fiji-Pristine.app/jars/aws-java-sdk-core-1.11.796.jar) | |
| jars/aws-java-sdk-kms-1.11.719.jar -- IS OBSOLETE (Java-8 file is: Fiji-Pristine.app/jars/aws-java-sdk-kms-1.11.796.jar) | |
| jars/aws-java-sdk-s3-1.11.719.jar -- IS OBSOLETE (Java-8 file is: Fiji-Pristine.app/jars/aws-java-sdk-s3-1.11.796.jar) | |
| jars/commons-compress-1.19.jar -- IS OBSOLETE (Java-8 file is: Fiji-Pristine.app/jars/commons-compress-1.20.jar) | |
| jars/error_prone_annotations-2.3.4.jar -- IS OBSOLETE (Java-8 file is: Fiji-Pristine.app/jars/error_prone_annotations-2.3.4.jar) | |
| jars/gax-1.54.0.jar -- IS OBSOLETE (Java-8 file is: Fiji-Pristine.app/jars/gax-1.56.0.jar) | |
| jars/gax-httpjson-0.71.0.jar -- IS OBSOLETE (Java-8 file is: Fiji-Pristine.app/jars/gax-httpjson-0.73. |
ctrueden
/ failures.txt
Last active
July 15, 2020 20:23
Full scan of all JARs on update.imagej.net, update.fiji.sc and sites.imagej.net
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| 2 ca.mcgill:Sholl_Analysis:3.6.13 | |
| 1 ca.mcgill:Sholl_Analysis:3.6.2 | |
| 1 ca.mcgill:Sholl_Analysis:3.7.4 | |
| 1 ca.mcgill:Sholl_Analysis:4.0.1 | |
| 1 ch.unibas.biozentrum.imcf:imcf-fiji-toolbars:2.0.2 | |
| 24 com.github.jeanollion.bacmman:bacmman-core:2.2.4 | |
| 2 com.github.jeanollion.bacmman:bacmman-core:2.2.5 | |
| 5 com.github.jeanollion.bacmman:bacmman-core:2.2.9 | |
| 2 com.github.jeanollion.bacmman:bacmman-core:v2.2.1 | |
| 1 com.github.jeanollion.bacmman:bacmman-core:v2.2.2 |
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| diff --git a/curtis-deps.txt b/tobias-deps.txt | |
| index 11c28a1..cd26f14 100644 | |
| --- a/curtis-deps.txt | |
| +++ b/tobias-deps.txt | |
| @@ -111,6 +111,71 @@ | |
| [INFO] +- net.imagej:imagej-notebook:jar:0.7.1:compile | |
| [INFO] | \- org.knowm.xchart:xchart:jar:3.5.4:compile | |
| [INFO] | \- de.erichseifert.vectorgraphics2d:VectorGraphics2D:jar:0.13:compile | |
| +[INFO] +- net.imagej:imagej-omero:jar:0.8.1:compile | |
| +[INFO] | \- omero:blitz:jar:5.4.9-ice36-b101:compile |
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| #@ LUTService lut | |
| #@ DatasetView dv | |
| #@ boolean verbose | |
| def printColorTable = { t -> | |
| if (t == null) { | |
| println(" null") | |
| return | |
| } | |
| for (comp = 0; comp < t.getComponentCount(); comp++) { |
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| $ for f in *.tar.gz | |
| do | |
| echo | |
| echo "[$f]" | |
| result=$(tar tf "$f" | grep -i 'jvm\.\(dll\|dylib\|so\)$') | |
| test "$result" && echo "$result" || echo "--> NOTHING FOUND" | |
| done; for f in *.zip | |
| do | |
| echo | |
| echo "[$f]" |
ctrueden
/ adoptopenjdk-11-1-JVMCI.log
Last active
June 16, 2020 22:02
net.imglib2.img.DirtyVolatileBenchmark
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| WARNING: An illegal reflective access operation has occurred | |
| WARNING: Illegal reflective access by org.openjdk.jmh.util.Utils (file:/Users/curtis/code/imglib/imglib2/target/dependency/jmh-core-1.19.jar) to field java.io.PrintStream.charOut | |
| WARNING: Please consider reporting this to the maintainers of org.openjdk.jmh.util.Utils | |
| WARNING: Use --illegal-access=warn to enable warnings of further illegal reflective access operations | |
| WARNING: All illegal access operations will be denied in a future release | |
| # JMH version: 1.19 | |
| # VM version: JDK 11.0.2, VM 11.0.2+9 | |
| # VM invoker: /Library/Java/JavaVirtualMachines/adoptopenjdk-11.jdk/Contents/Home/bin/java | |
| # VM options: -XX:+UnlockExperimentalVMOptions -XX:+EnableJVMCI -XX:+UseJVMCICompiler | |
| # Warmup: 4 iterations, 200 ms each |
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| #!/usr/bin/env python | |
| # | |
| # scifio.py - Open images as numpy arrays using SCIFIO and Bio-Formats. | |
| # | |
| # -- Settings -- | |
| max_mem_mb = '6144' | |
| scifio_lifesci = False |
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| #!/bin/sh | |
| # TODO: Why doesn't this work | |
| trap "exit" INT | |
| die() { | |
| echo "$1" 2>&1 | |
| exit 1 | |
| } |
ctrueden
/ charting-extension.pom
Last active
September 20, 2019 13:56
Unifying multiple POMs at different BOM versions
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| <?xml version="1.0" encoding="UTF-8"?> | |
| <project xmlns="http://maven.apache.org/POM/4.0.0" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://maven.apache.org/POM/4.0.0 http://maven.apache.org/xsd/maven-4.0.0.xsd"> | |
| <modelVersion>4.0.0</modelVersion> | |
| <groupId>ij-env-test</groupId> | |
| <artifactId>charting-extension</artifactId> | |
| <packaging>pom</packaging> | |
| <version>1</version> | |
| <name>Charting Plugin</name> |