Ryan Dale daler

daler / genome-minimal-fail.gff

Created January 22, 2015 15:45 — forked from rmzelle/genome-minimal-fail.gff

	##gff-version 3
	scaffold_28 prediction gene 1 402 0 + . ID=545184;Name=545184
	scaffold_28 prediction gene 805 981 0 - . ID=93782;Name=93782
	scaffold_28 prediction gene 2030 2721 0 + . ID=545205;Name=545205
	scaffold_28 prediction gene 3273 3545 0 - . Name=YOL159C-A;Synteny=no_synteny;SystematicGeneName=YOL159C-A;ID=38792
	scaffold_28 prediction gene 5318 5833 0 - . Name=YOL159C;Synteny=no_synteny;SystematicGeneName=YOL159C;ID=38793
	scaffold_28 prediction gene 6780 8600 0 - . Name=ENB1;Synteny=no_synteny;SystematicGeneName=YOL158C;StandardGeneName=ENB1;ID=38794
	scaffold_28 prediction gene 9698 11467 0 - . Name=IMA4;Synteny=no_synteny;SystematicGeneName=YJL221C;StandardGeneName=IMA4;ID=38795

daler / dnaa.sh

Created July 8, 2011 22:34 — forked from brentp/dnaa.sh

	sudo apt-get install libtool
	git clone git://dnaa.git.sourceforge.net/gitroot/dnaa/dnaa dnaa-git
	cd dnaa-git
	# bfast required. see above gist
	cp -r ../bfast-git ./bfast
	# samtools require. see above gist.
	cp -r ../samtools-svn/ ./samtools

	sh autogen.sh && ./configure && make && sudo make install

daler / PWMSearch.py

Created March 23, 2011 13:55 — forked from JudoWill/PWMSearch.py

	"""
	PWMSearch

	Searches through a fasta sequence for the relevant Position Weight Matrices
	from the Jaspar Database.

	"""
	from __future__ import division

	from optparse import OptionParser