| class Backend(metaclass=BackendType): | |
| """Representation of a backend. | |
| A backend is initialized with an instance of | |
| :class:`gwf.core.PreparedWorkflow`. | |
| """ | |
| def __init__(self, workflow): | |
| if not isinstance(workflow, PreparedWorkflow): |
| # -*- mode: ruby -*- | |
| # vi: set ft=ruby : | |
| Vagrant.configure("2") do |config| | |
| config.vm.box = "hashicorp/precise64" | |
| config.vm.synced_folder ".", "/vagrant_data" | |
| config.vm.hostname = "slurm" | |
| config.vm.provision "file", source: "ci/slurm.conf", destination: "/home/vagrant/slurm.conf" | |
| config.vm.provision "shell", inline: <<-SHELL | |
| apt-get update |
| import random | |
| import time | |
| from multiprocessing.connection import Client | |
| from server import StatusRequest, SubmitRequest | |
| class GWFClient: | |
| def __init__(self, *args, **kwargs): |
| \newmdenv[% | |
| backgroundcolor=white, | |
| topline=false, | |
| bottomline=false, | |
| rightline=false, | |
| linecolor=black, | |
| linewidth=1pt, | |
| innerleftmargin=5pt, | |
| innerrightmargin=15pt, | |
| innertopmargin=2pt, |
| Process ForkPoolWorker-17: | |
| Traceback (most recent call last): | |
| File "/Users/das/anaconda/envs/gwf/lib/python3.5/multiprocessing/process.py", line 249, in _bootstrap | |
| self.run() | |
| File "/Users/das/anaconda/envs/gwf/lib/python3.5/multiprocessing/process.py", line 93, in run | |
| self._target(*self._args, **self._kwargs) | |
| File "/Users/das/anaconda/envs/gwf/lib/python3.5/multiprocessing/pool.py", line 103, in worker | |
| initializer(*initargs) | |
| File "/Users/das/Code/gwf/gwf/backends/local.py", line 224, in __init__ | |
| self.manager = Manager() |
[Astrid Kousholt] TBA.
[2017/03/08] [Elham Bavafaye Haghighi] Bartsch GJ, Mitra AP, Mitra SA, et al. Use of Artificial Intelligence and Machine Learning Algorithms with Gene Expression Profiling to Predict Recurrent Nonmuscle Invasive Urothelial Carcinoma of the Bladder. J Urol. 2016;195(2):493-498. doi:10.1016/j.juro.2015.09.090.
| KNIME - Cellular phenotyping | |
| Galaxy Image Analysis | |
| COMPSs | |
| YEASTRACT | |
| WormBase | |
| Reactome knowledgebase of biological pathways | |
| PRIDE | |
| PANTHER | |
| AnalysisServiceService | |
| Kyoto encyclopedia of genes and genomes KEGG |
| def prepend_line(line, rest): | |
| return line + '\n' + rest | |
| class Transformer: | |
| def __call__(self, f): | |
| def wrapper(*args, **kwargs): | |
| options, spec = f(*args, **kwargs) | |
| return self.transform(options, spec) | |
| return wrapper |
| accessibility: [] | |
| additionDate: '2015-12-17T14:23:00Z' | |
| availability: null | |
| canonicalID: null | |
| collectionID: | |
| - CBS | |
| contact: | |
| - email: [email protected] | |
| name: Henrik Nielsen | |
| tel: null |
| #!/bin/bash | |
| # | |
| # Short description of what this script does... | |
| # | |
| # This is a bash script template based on the recommendations | |
| # from Julia Evans' excellent blog post about bash quirks and | |
| # how to avoid them: | |
| # | |
| # https://jvns.ca/blog/2017/03/26/bash-quirks/ | |
| # |