arq5x

# Download the raw CADD TSV and Tabix index (no annotations, just scores)
wget http://krishna.gs.washington.edu/download/CADD/v1.0/whole_genome_SNVs.tsv.gz
wget http://krishna.gs.washington.edu/download/CADD/v1.0/whole_genome_SNVs.tsv.gz.tbi

# it is big. 79Gb
ls -ltrh whole_genome_SNVs.tsv.gz
-rw-r--r-- 1 arq5x users 79G Sep 26 01:44 whole_genome_SNVs.tsv.gz

# for testing, let's play with the chr22 intervals
tabix whole_genome_SNVs.tsv.gz 22 | bgzip > whole_genome_SNVs.tsv.22.gz

richardcornish

Git notes

Start

1. Install Git
2. Create a GitHub account
3. Open Terminal /Applications/Utilities/Terminal.app

Configure

jimbojsb

Step 0:

Get Homebrew installed on your mac if you don't already have it

Step 1:

Install highlight. "brew install highlight". (This brings down Lua and Boost as well)

Step 2: