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[R] Forest Plot using ggplot2 https://rawgit.com/dceoy/a3c63540a8722afbc4dd/raw/plot.svg
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| #!/usr/bin/env Rscript | |
| sapply(c('data.table', 'ggplot2'), function(p) require(p, character.only = TRUE)) | |
| or_ci <- fread('odds_ratio.csv') | |
| forest <- ggplot(or_ci, aes(x = group, y = odds_ratio, ymin = ci_lower, ymax = ci_upper, colour = class)) + | |
| geom_hline(aes(yintercept = 1), colour = '#4400FF', linetype = 2) + | |
| geom_pointrange(size = 0.7, shape = 15) + | |
| scale_y_log10(limits = c(0.01, 100), breaks = c(0.1, 1, 10)) + | |
| scale_x_discrete(limits = rev(or_ci$group)) + | |
| scale_colour_manual(values = c('#FF00FF', '#4400FF')) + | |
| theme(panel.grid.major.y = element_blank(), panel.grid.minor.y = element_blank(), panel.background = element_rect(fill = '#DDDDFF')) + | |
| coord_flip() | |
| svg('forest.svg', width = 6, height = 7) | |
| plot(forest) | |
| dev.off() |
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| group | class | odds_ratio | ci_lower | ci_upper | |
|---|---|---|---|---|---|
| Group A | A_E | 1.2449352 | 0.67203877 | 2.2783992 | |
| Group B | A_E | 4.4078327 | 2.26286951 | 8.7109339 | |
| Group C | A_E | 0.1399230 | 0.03792926 | 0.5132163 | |
| Group D | A_E | 0.1258163 | 0.06423664 | 0.2409733 | |
| Group E | A_E | 23.6469770 | 12.93365350 | 44.8902730 | |
| Group F | F_J | 0.1703764 | 0.08284161 | 0.3305291 | |
| Group G | F_J | 16.7660398 | 6.56914161 | 54.8668813 | |
| Group H | F_J | 0.1670522 | 0.10099002 | 0.2700260 | |
| Group I | F_J | 0.5147020 | 0.33633240 | 0.7857115 | |
| Group J | F_J | 3.6561027 | 1.37950440 | 9.9886371 |
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