Created
October 2, 2019 11:19
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(partial) EasyBuild log for failed build of /scratch/edmondac-admin/eb-ClC0RZ/files_pr8316/n/NCO/NCO-4.7.9-intel-2018b.eb (PR #8316)
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| == 2019-10-02 12:19:24,978 easyblock.py:279 INFO This is EasyBuild 4.0.1.dev0-re6956d4fcab2123c6702f11cd2b907efee117cef (framework: 4.0.1.dev0-r83f96cb6cfe7169a037a3f26e4ec0964fecd2291, easyblocks: 4.0.1.dev0-re6956d4fcab2123c6702f11cd2b907efee117cef) on host bear-pg0305u03a.bear.cluster. | |
| == 2019-10-02 12:19:24,978 easyblock.py:285 INFO This is easyblock ConfigureMake from module easybuild.easyblocks.generic.configuremake (/rds/bear-apps/devel/github/edmondac-eb-contrib/src/easybuild-easyblocks/easybuild/easyblocks/generic/configuremake.pyo) | |
| == 2019-10-02 12:19:24,979 easyblock.py:840 INFO Build dir set to /dev/shm/build-edmondac-admin/edmondac-admin-contrib/NCO/4.7.9/intel-2018b | |
| == 2019-10-02 12:19:24,979 easyblock.py:900 INFO Software install dir set to /rds/bear-apps/devel/github/edmondac-eb-contrib/EL7/EL7-power9/software/NCO/4.7.9-intel-2018b | |
| == 2019-10-02 12:19:24,979 easyblock.py:905 INFO Module install dir set to /rds/bear-apps/devel/github/edmondac-eb-contrib/EL7/EL7-power9/modules/all | |
| == 2019-10-02 12:19:24,979 easyblock.py:264 INFO Init completed for application name NCO version 4.7.9 | |
| == 2019-10-02 12:19:24,979 easyblock.py:3035 INFO Obtained application instance of for NCO (easyblock: ConfigureMake) | |
| == 2019-10-02 12:19:25,981 one.py:149 INFO Skipping reformatting value for parameter 'toolchain' | |
| == 2019-10-02 12:19:25,981 one.py:149 INFO Skipping reformatting value for parameter 'toolchainopts' | |
| == 2019-10-02 12:19:25,982 filetools.py:1264 INFO Creating directory /scratch/edmondac-admin/eb-ClC0RZ/reprod_20191002121925_895 (parents: True, set_gid: False, sticky: False) | |
| == 2019-10-02 12:19:25,982 easyblock.py:3213 INFO Dumped easyconfig instance to /scratch/edmondac-admin/eb-ClC0RZ/reprod_20191002121925_895/NCO-4.7.9-intel-2018b.eb | |
| == 2019-10-02 12:19:25,982 filetools.py:1264 INFO Creating directory /scratch/edmondac-admin/eb-ClC0RZ/reprod_20191002121925_895/easyblocks (parents: True, set_gid: False, sticky: False) | |
| == 2019-10-02 12:19:25,983 filetools.py:1734 INFO /rds/bear-apps/devel/github/edmondac-eb-contrib/src/easybuild-easyblocks/easybuild/easyblocks/generic/configuremake.py copied to /scratch/edmondac-admin/eb-ClC0RZ/reprod_20191002121925_895/easyblocks/configuremake.py | |
| == 2019-10-02 12:19:25,983 easyblock.py:3228 INFO Dumped easyblock configuremake.py required for reproduction to /scratch/edmondac-admin/eb-ClC0RZ/reprod_20191002121925_895/easyblocks | |
| == 2019-10-02 12:19:25,984 easyblock.py:1601 INFO Number of iterations to perform for central part of installation procedure: 1 | |
| == 2019-10-02 12:19:25,984 build_log.py:260 INFO building and installing NCO/4.7.9-intel-2018b... | |
| == 2019-10-02 12:19:25,984 build_log.py:260 INFO fetching files... | |
| == 2019-10-02 12:19:25,984 easyblock.py:2813 INFO Starting fetch step | |
| == 2019-10-02 12:19:25,984 easyblock.py:2819 INFO Running method fetch_step part of step fetch | |
| == 2019-10-02 12:19:25,984 easyblock.py:1682 WARNING Easyconfig does not specify an EasyBuild-version (key 'easybuild_version')! Assuming the latest version | |
| == 2019-10-02 12:19:25,985 filetools.py:404 INFO Command eb found at /rds/bear-apps/devel/github/edmondac-eb-contrib/EL7/EL7-power9/venv-dev-github-contrib/bin/eb | |
| == 2019-10-02 12:19:26,034 easyblock.py:668 INFO Found file 4.7.9.tar.gz at /rds/bear-sysadmin/configmgmt/easybuild/sources/n/NCO/4.7.9.tar.gz | |
| == 2019-10-02 12:19:26,034 easyblock.py:393 INFO Added sources: [{'path': '/rds/bear-sysadmin/configmgmt/easybuild/sources/n/NCO/4.7.9.tar.gz', 'cmd': None, 'finalpath': '/dev/shm/build-edmondac-admin/edmondac-admin-contrib/NCO/4.7.9/intel-2018b', 'name': '4.7.9.tar.gz', 'checksum': '048f6298bceb40913c3ae433f875dea1e9129b1c86019128e7271d08f274a879'}] | |
| == 2019-10-02 12:19:26,034 easyblock.py:1723 INFO no patches provided | |
| == 2019-10-02 12:19:26,097 easyblock.py:1733 INFO md5 checksum for /rds/bear-sysadmin/configmgmt/easybuild/sources/n/NCO/4.7.9.tar.gz: 6ad3febf223f676ca9281c39c48fb9f3 | |
| == 2019-10-02 12:19:26,114 easyblock.py:1733 INFO sha256 checksum for /rds/bear-sysadmin/configmgmt/easybuild/sources/n/NCO/4.7.9.tar.gz: 048f6298bceb40913c3ae433f875dea1e9129b1c86019128e7271d08f274a879 | |
| == 2019-10-02 12:19:26,114 easyblock.py:1768 INFO Checking dirs that need to be created: ['/rds/bear-apps/devel/github/edmondac-eb-contrib/EL7/EL7-power9/software/NCO/4.7.9-intel-2018b', '/rds/bear-apps/devel/github/edmondac-eb-contrib/EL7/EL7-power9/modules/all/NCO', '/rds/bear-apps/devel/github/edmondac-eb-contrib/EL7/EL7-power9/modules/tools/NCO'] | |
| == 2019-10-02 12:19:26,119 configuremake.py:125 INFO Found recent config.guess at /rds/bear-sysadmin/configmgmt/easybuild/sources/generic/eb_v4.0.1.dev0/ConfigureMake/config.guess, using it if required | |
| == 2019-10-02 12:19:26,119 build_log.py:260 INFO creating build dir, resetting environment... | |
| == 2019-10-02 12:19:26,119 easyblock.py:2813 INFO Starting ready step | |
| == 2019-10-02 12:19:26,119 easyblock.py:2819 INFO Running method check_readiness_step part of step ready | |
| == 2019-10-02 12:19:26,125 easyblock.py:1620 INFO Setting parallelism: 36 | |
| == 2019-10-02 12:19:26,143 environment.py:97 INFO Environment variable LD_LIBRARY_PATH set to (previous value: '') | |
| == 2019-10-02 12:19:26,143 environment.py:97 INFO Environment variable LD_PRELOAD set to (previous value: '') | |
| == 2019-10-02 12:19:26,143 easyblock.py:1634 WARNING Loaded modules detected: ['bb-variables/13', 'slurm-moab-wrappers/2', 'slurm-helpers/3', 'openmpi-env/5', 'bear-licences/5', 'bb-singularity-conf/1', 'bluebear/20'] | |
| == 2019-10-02 12:19:26,143 easyblock.py:2819 INFO Running method make_builddir part of step ready | |
| == 2019-10-02 12:19:26,144 easyblock.py:925 INFO Found old directory /dev/shm/build-edmondac-admin/edmondac-admin-contrib/NCO/4.7.9/intel-2018b | |
| == 2019-10-02 12:19:26,150 filetools.py:1360 INFO Path /dev/shm/build-edmondac-admin/edmondac-admin-contrib/NCO/4.7.9/intel-2018b successfully removed. | |
| == 2019-10-02 12:19:26,150 easyblock.py:932 INFO Removed old directory /dev/shm/build-edmondac-admin/edmondac-admin-contrib/NCO/4.7.9/intel-2018b | |
| == 2019-10-02 12:19:26,150 filetools.py:1264 INFO Creating directory /dev/shm/build-edmondac-admin/edmondac-admin-contrib/NCO/4.7.9/intel-2018b (parents: True, set_gid: False, sticky: False) | |
| == 2019-10-02 12:19:26,150 easyblock.py:2819 INFO Running method reset_env part of step ready | |
| == 2019-10-02 12:19:26,151 easyblock.py:2819 INFO Running method handle_iterate_opts part of step ready | |
| == 2019-10-02 12:19:26,151 build_log.py:260 INFO unpacking... | |
| == 2019-10-02 12:19:26,151 easyblock.py:2813 INFO Starting source step | |
| == 2019-10-02 12:19:26,151 easyblock.py:2819 INFO Running method checksum_step part of step source | |
| == 2019-10-02 12:19:26,170 easyblock.py:1784 INFO Checksum verification for /rds/bear-sysadmin/configmgmt/easybuild/sources/n/NCO/4.7.9.tar.gz using 048f6298bceb40913c3ae433f875dea1e9129b1c86019128e7271d08f274a879 passed. | |
| == 2019-10-02 12:19:26,170 easyblock.py:2819 INFO Running method extract_step part of step source | |
| == 2019-10-02 12:19:26,170 easyblock.py:1855 INFO Unpacking source 4.7.9.tar.gz | |
| == 2019-10-02 12:19:26,170 run.py:219 INFO running cmd: tar xzf /rds/bear-sysadmin/configmgmt/easybuild/sources/n/NCO/4.7.9.tar.gz | |
| == 2019-10-02 12:19:26,321 build_log.py:260 INFO patching... | |
| == 2019-10-02 12:19:26,321 easyblock.py:2813 INFO Starting patch step | |
| == 2019-10-02 12:19:26,321 easyblock.py:2819 INFO Running method patch_step part of step patch | |
| == 2019-10-02 12:19:26,322 build_log.py:260 INFO preparing... | |
| == 2019-10-02 12:19:26,322 easyblock.py:2813 INFO Starting prepare step | |
| == 2019-10-02 12:19:26,322 easyblock.py:2819 INFO Running method prepare_step part of step prepare | |
| == 2019-10-02 12:19:26,380 build_log.py:164 ERROR EasyBuild crashed with an error (at easybuild/base/exceptions.py:124 in __init__): Missing modules for dependencies (use --robot?): Bison/3.0.5-GCCcore-7.3.0, flex/2.6.4-GCCcore-7.3.0, UDUNITS/2.2.26-intel-2018b, expat/2.2.5-GCCcore-7.3.0, ANTLR/2.7.7-GCCcore-7.3.0, libdap/3.20.3-GCCcore-7.3.0, GSL/2.5-iccifort-2018.3.222-GCC-7.3.0-2.30, netCDF/4.6.1-intel-2018b (at easybuild/tools/toolchain/toolchain.py:458 in _check_dependencies) | |
| == 2019-10-02 12:19:26,380 easyblock.py:3065 WARNING build failed (first 300 chars): Missing modules for dependencies (use --robot?): Bison/3.0.5-GCCcore-7.3.0, flex/2.6.4-GCCcore-7.3.0, UDUNITS/2.2.26-intel-2018b, expat/2.2.5-GCCcore-7.3.0, ANTLR/2.7.7-GCCcore-7.3.0, libdap/3.20.3-GCCcore-7.3.0, GSL/2.5-iccifort-2018.3.222-GCC-7.3.0-2.30, netCDF/4.6.1-intel-2018b | |
| == 2019-10-02 12:19:26,380 easyblock.py:294 INFO Closing log for application name NCO version 4.7.9 |
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