Derek Ashley Thomas derekbrokeit
derekbrokeit
/ user-omp_bsd.patch
Created
February 12, 2013 02:18
Building LAMMPS with the USER-OMP package is broken in lammps-11Feb13 because of the difference between GNU sed and BSD sed.
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| diff --git a/src/USER-OMP/Install.sh b/src/USER-OMP/Install.sh | |
| old mode 100644 | |
| new mode 100755 | |
| index b37fd00..dd87e8b | |
| --- a/src/USER-OMP/Install.sh | |
| +++ b/src/USER-OMP/Install.sh | |
| @@ -4,7 +4,7 @@ | |
| # do not install child files if parent does not exist | |
| for file in *_omp.cpp *_omp.h ; do |
derekbrokeit
/ variable_env.diff
Created
January 29, 2013 07:37
Add "environment" style to variables. Allows the user to import variables directly from the environment. It should be noted that this was just an experiment. I have since found that the `-v` commandline flag is the best way to do this. The problem with environment variables here is that 1) it does not handle array data well `export blah=(1 2 3)`…
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| diff --git a/src/variable.cpp b/src/variable.cpp | |
| index d60accc..b52220c 100644 | |
| --- a/src/variable.cpp | |
| +++ b/src/variable.cpp | |
| @@ -43,7 +43,7 @@ using namespace MathConst; | |
| #define MYROUND(a) (( a-floor(a) ) >= .5) ? ceil(a) : floor(a) | |
| -enum{INDEX,LOOP,WORLD,UNIVERSE,ULOOP,STRING,FILEVAR,EQUAL,ATOM}; | |
| +enum{INDEX,LOOP,WORLD,UNIVERSE,ULOOP,STRING,FILEVAR,EQUAL,ATOM,ENVIRONMENT}; |
derekbrokeit
/ lammps_explicit_library_location_call.diff
Created
January 9, 2013 10:49
Explicitly call the library based on the homebrew prefix location. This is best for users who do not use the standard homebrew installation directory.
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| diff --git a/python/lammps.py b/python/lammps.py | |
| index c65e84c..b2b28a2 100644 | |
| --- a/python/lammps.py | |
| +++ b/python/lammps.py | |
| @@ -23,8 +23,8 @@ class lammps: | |
| # if name = "g++", load liblammps_g++.so | |
| try: | |
| - if not name: self.lib = CDLL("liblammps.so",RTLD_GLOBAL) | |
| - else: self.lib = CDLL("liblammps_%s.so" % name,RTLD_GLOBAL) |
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| diff --git a/src/MAKE/Makefile.mac b/src/MAKE/Makefile.mac | |
| index 42f5882..2f0f42a 100755 | |
| --- a/src/MAKE/Makefile.mac | |
| +++ b/src/MAKE/Makefile.mac | |
| @@ -6,18 +6,18 @@ SHELL = /bin/sh | |
| # compiler/linker settings | |
| # specify flags and libraries needed for your compiler | |
| -CC = c++ | |
| -CCFLAGS = -O |
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| diff --git a/src/MAKE/Makefile.mac b/src/MAKE/Makefile.mac | |
| index ccefa59..42f5882 100755 | |
| --- a/src/MAKE/Makefile.mac | |
| +++ b/src/MAKE/Makefile.mac | |
| @@ -48,9 +48,9 @@ MPI_LIB = -lmpi_stubs | |
| # PATH = path for FFT library | |
| # LIB = name of FFT library | |
| -FFT_INC = -DFFT_FFTW | |
| +FFT_INC = -DFFT_NONE |
derekbrokeit
/ fix-config-sx9.diff
Created
December 20, 2012 00:06
Fix the configure scripts (config.guess and config.sub) to support NEC-SX9
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| diff --git a/config.guess b/config.guess | |
| index d622a44..5dd0df7 100755 | |
| --- a/config.guess | |
| +++ b/config.guess | |
| @@ -1219,6 +1219,12 @@ EOF | |
| SX-8R:SUPER-UX:*:*) | |
| echo sx8r-nec-superux${UNAME_RELEASE} | |
| exit ;; | |
| + SX-9:SUPER-UX:*:*) | |
| + echo sx9-nec-superux${UNAME_RELEASE} |
derekbrokeit
/ build-fftw3-nec-sx.sh
Last active
December 9, 2015 23:08
configure fftw on nec-sx platform ... why do you taunt me?!
The diff file is here: https://gist.github.com/4341920 If the machine has a permission error, just move to the "builder" directory and run `make && make install` again ... and again ... and again .. until it finally works
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| #!/bin/sh | |
| # fix the configure files | |
| patch -p1 config.guess < fix-config-sx9.diff | |
| # make the build directory | |
| mkdir -p builder | |
| cd builder | |
| # configure |
derekbrokeit
/ python_setup_tests
Created
December 17, 2012 07:47
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| diff --git a/setup.py b/setup.py | |
| index 6b47451..0bfca0c 100644 | |
| --- a/setup.py | |
| +++ b/setup.py | |
| @@ -620,7 +620,7 @@ class PyBuildExt(build_ext): | |
| missing.extend(['imageop']) | |
| # readline | |
| - do_readline = self.compiler.find_library_file(lib_dirs, 'readline') | |
| + do_readline = '/usr/local/opt/readline/lib/libhistory.dylib' |
derekbrokeit
/ python_setup_NO_tkinter-framework.diff
Created
December 17, 2012 03:21
Build Python without OSX Tkinter Framework auto detection
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| diff --git a/setup.py b/setup.py | |
| index 6b47451..51cc779 100644 | |
| --- a/setup.py | |
| +++ b/setup.py | |
| @@ -1702,9 +1702,9 @@ class PyBuildExt(build_ext): | |
| # AquaTk is a separate method. Only one Tkinter will be built on | |
| # Darwin - either AquaTk, if it is found, or X11 based Tk. | |
| platform = self.get_platform() | |
| - if (platform == 'darwin' and | |
| - self.detect_tkinter_darwin(inc_dirs, lib_dirs)): |
derekbrokeit
/ gist:4269280
Created
December 12, 2012 16:29
patch for pymol pmg_tk to install on OSX with free glut
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| --- pymol/modules/pmg_tk/skins/normal/__init__.py 2012-12-13 01:19:10.000000000 +0900 | |
| +++ pymol_new/modules/pmg_tk/skins/normal/__init__.py 2012-12-13 01:15:42.000000000 +0900 | |
| @@ -250,7 +250,7 @@ | |
| self.buttonArea.destroy() | |
| def my_show(self,win,center=1): | |
| - if sys.platform!='linux2': | |
| + if (sys.platform!='linux2') and (sys.platform!='darwin'): | |
| win.show() | |
| else: # autocenter, deiconify, and run mainloop |