This file contains hidden or bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
using Turing | |
using StatsPlots | |
using Random | |
using Statistics | |
function demo(N::Int; n::Int = 10) | |
# observation noise | |
σ² = 0.3 |
This file contains hidden or bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
using Turing | |
using StatsPlots | |
using Random | |
using Statistics | |
function demo(N::Int; n::Int = 10) | |
# observation noise | |
σ² = 0.3 |
This file contains hidden or bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
using DelayDiffEq, DiffEqParamEstim, BlackBoxOptim, DataFrames, LsqFit | |
using Plots | |
gr() | |
include("importData.jl") | |
include("plot.jl") | |
# import data from the path, in which: | |
# pop: population data | |
# g1, g2: g1 and g2 data |
This file contains hidden or bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
using MuladdMacro, EllipsisNotation, BenchmarkTools | |
# In place | |
@generated function f_loop!(out, dt, y, k, b, idxs::Nothing, ::Type{Val{N}}) where N | |
sumexpr = :(+($((:(k[$i][idx]*b[$i]) for i in 1:N)...))) | |
quote | |
@muladd @inbounds for idx in eachindex(out) | |
out[idx] = y[idx] + dt*$sumexpr | |
end |
This file contains hidden or bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
using MacroTools: namify | |
using Base.Meta: isexpr | |
## Utilities | |
# Split struct definition (neglecting constructors) | |
function splitstruct(structdef) | |
# Split type definition | |
isexpr(structdef, :struct, 3) || error("Not a type definition:", structdef) |
NewerOlder