Darius Jazayeri djazayeri
djazayeri
/ gist:bb817fbc359cbafe1e1f
Created
November 24, 2014 18:55
This file contains hidden or bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| WARN - WebModuleUtil.startModule(286) |2014-11-24 13:29:31,888| Unable to refresh the WebApplicationContext for module: referenceapplication | |
| org.springframework.beans.factory.BeanCreationException: Error creating bean with name 'org.springframework.web.servlet.mvc.annotation.DefaultAnnotationHandlerMapping#0' defined in URL [jar:file:/tmp/tomcat7-tomcat7-tmp/1416850176698.openmrs-lib-cache/allergyui/allergyui.jar!/webModuleApplicationContext.xml]: Initialization of bean failed; nested exception is org.springframework.beans.factory.BeanCreationException: Error creating bean with name 'HL7MessageController1_8': Injection of autowired dependencies failed; nested exception is org.springframework.beans.factory.BeanCreationException: Could not autowire field: org.openmrs.module.webservices.rest.web.v1_0.controller.MainResourceController org.openmrs.module.webservices.rest.web.v1_0.controller.openmrs1_8.HL7MessageController1_8.mainResourceController; nested exception is org.springframework.beans.factory.NoSuchBeanD |
djazayeri
/ gist:577e57a2749d20867cfe
Created
March 17, 2015 03:21
This file contains hidden or bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| assertThat(updated.getNames(), containsInAnyOrder( | |
| allOf( | |
| hasProperty("name", is("History of present illness")), | |
| hasProperty("locale", is(Locale.ENGLISH)), | |
| hasProperty("localePreferred", is(true)), | |
| hasProperty("conceptNameType", is(ConceptNameType.FULLY_SPECIFIED))), | |
| allOf( | |
| hasProperty("name", is("HPI")), | |
| hasProperty("locale", is(Locale.ENGLISH)), | |
| hasProperty("localePreferred", is(false)), |
djazayeri
/ gist:d3dc89988486fe6f988d
Created
March 17, 2015 23:43
Example of using OpenMRS REST to create a patient and an encounter (in OpenMRS 2.1)
This file contains hidden or bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| // go to http://demo.openmrs.org, log in as admin/Admin123, open the JavaScript console, and do the following: | |
| var URL_BASE = "http://demo.openmrs.org/openmrs/ws/rest/v1/"; | |
| var resources = {}; | |
| function andLog(data) { console.log(data); } | |
| function andSaveAs(variable) { return function(data) { resources[variable] = data; console.log(variable + " => " + JSON.stringify(data)); } } | |
| function andSaveFirstResultAs(variable) { return function(data) { data = data.results[0]; resources[variable] = data; console.log(variable + " => " + JSON.stringify(data)); } } | |
| function random() { return Math.floor(Math.random() * 10000); } | |
| function post(resource, data, success) { | |
| $.ajax({ type: "POST", url: URL_BASE + resource, contentType: "application/json", data: JSON.stringify(data), success: success }); |
This file contains hidden or bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| @Resource(name = RestConstants.VERSION_1 + "/orderentryconfig", supportedClass = Object.class, supportedOpenmrsVersions = {"1.10.*", "1.11.*"}) | |
| public class OrderEntryConfigResource1_10 implements Listable { | |
| @Override | |
| public SimpleObject getAll(RequestContext context) throws ResponseException { | |
| OrderService orderService = Context.getOrderService(); | |
| SimpleObject ret = new SimpleObject(); | |
| // try/catch each of these to avoid failing in the case where one of these is not configured | |
| try { |
djazayeri
/ ad-hoc-cohort-query.js
Created
December 16, 2015 14:53
Ad hoc reportingrest cohort query
This file contains hidden or bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| var startAndEndDateParameters = "<parameters>" + | |
| " <org.openmrs.module.reporting.evaluation.parameter.Parameter>\n" + | |
| " <name>startDate</name>\n" + | |
| " <label></label>\n" + | |
| " <type>java.util.Date</type>\n" + | |
| " <required>true</required>\n" + | |
| " </org.openmrs.module.reporting.evaluation.parameter.Parameter>\n" + | |
| " <org.openmrs.module.reporting.evaluation.parameter.Parameter>\n" + | |
| " <name>endDate</name>\n" + | |
| " <label></label>\n" + |
djazayeri
/ What is sent to OpenMRS Atlas
Created
January 4, 2016 21:58
This file contains hidden or bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| { | |
| "id": "54f912cd-1f58-4379-a92c-4fcc0aa1e894", | |
| "patients": "", | |
| "observations": "", | |
| "encounters": "", | |
| "atlasVersion": "2.1", | |
| "data": { | |
| "version": "2.3", | |
| "modules": [ | |
| { |
djazayeri
/ example-web-module-application-context.xml
Last active
January 21, 2016 19:27
This file contains hidden or bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| <bean class="org.openmrs.ui.framework.StandardModuleUiConfiguration"> | |
| <property name="moduleId" value="${project.parent.artifactId}"/> | |
| <property name="forOpenmrsVersion">1.*</property> | |
| <property name="developmentResourceFolders"> | |
| <list> | |
| <value>web-1.9</value> | |
| <value>omod</value> | |
| </list> | |
| </property> | |
| </bean> |
djazayeri
/ gist:c9f34dae902541bcedd5
Created
February 23, 2016 05:21
This file contains hidden or bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| {"error":{"message":"Could not open Hibernate Session for transaction; nested exception is org.hibernate.exception.GenericJDBCException: Cannot open connection","code":"org.springframework.orm.hibernate3.HibernateTransactionManager:597","detail":"org.springframework.transaction.CannotCreateTransactionException: Could not open Hibernate Session for transaction; nested exception is org.hibernate.exception.GenericJDBCException: Cannot open connection\n\tat org.springframework.orm.hibernate3.HibernateTransactionManager.doBegin(HibernateTransactionManager.java:597)\n\tat org.springframework.transaction.support.AbstractPlatformTransactionManager.getTransaction(AbstractPlatformTransactionManager.java:372)\n\tat org.springframework.transaction.support.TransactionTemplate.execute(TransactionTemplate.java:128)\n\tat org.openmrs.module.atomfeed.transaction.support.AtomFeedSpringTransactionManager.executeWithTransaction(AtomFeedSpringTransactionManager.java:37)\n\tat org.openmrs.module.atomfeed.advice.PatientAdvice.after |
djazayeri
/ installing-endtb.txt
Created
March 18, 2016 17:09
This file contains hidden or bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| -- these three lines are in my osx shell | |
| vagrant init bento/centos-6.7 | |
| vagrant up | |
| vagrant ssh | |
| -- from here it's in the centos vm | |
| sudo su | |
| yum install https://bahmni-repo.twhosted.com/rpm/bahmni/bahmni-installer-0.80-139.noarch.rpm | |
| yum install unzip | |
| wget https://bahmni-repo.twhosted.com/endtb/release-1.0/mysql_dump.sql |
djazayeri
/ a few lines up this also printed out in red
Created
March 18, 2016 17:39
failure for endtb 1.0 with newer db dump
This file contains hidden or bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| TASK: [bahmni-web | Check if bahmni-web rpm needs an update] ****************** | |
| <localhost> REMOTE_MODULE command yum list installed bahmni-web | |
| <localhost> EXEC ['/bin/sh', '-c', 'mkdir -p $HOME/.ansible/tmp/ansible-tmp-1458322206.16-84569702859029 && echo $HOME/.ansible/tmp/ansible-tmp-1458322206.16-84569702859029'] | |
| <localhost> PUT /tmp/tmpv5eMMc TO /root/.ansible/tmp/ansible-tmp-1458322206.16-84569702859029/command | |
| <localhost> EXEC /bin/sh -c 'sudo -k && sudo -H -S -p "[sudo via ansible, key=ctcjhexfztakavtkimdxfycvgssgyovq] password: " -u root /bin/sh -c '"'"'echo BECOME-SUCCESS-ctcjhexfztakavtkimdxfycvgssgyovq; LANG=en_US.UTF-8 LC_CTYPE=en_US.UTF-8 /usr/bin/python /root/.ansible/tmp/ansible-tmp-1458322206.16-84569702859029/command; rm -rf /root/.ansible/tmp/ansible-tmp-1458322206.16-84569702859029/ >/dev/null 2>&1'"'"'' | |
| failed: [localhost] => {"changed": true, "cmd": ["yum", "list", "installed", "bahmni-web"], "delta": "0:00:02.111244", "end": "2016-03-18 23:00:08.458928", "rc": 1, "start": "2016-03-18 2 |