dmyersturnbull

See https://github.com/dmyersturnbull/genomics-io/tree/master/core/src/main/java/org/pharmgkb/parsers/escape

package org.pharmgkb.parsers.escape;

import com.google.common.base.Preconditions;
import com.google.common.collect.ImmutableSet;

import javax.annotation.Nonnull;
import javax.annotation.concurrent.NotThreadSafe;
import javax.annotation.concurrent.ThreadSafe;

dmyersturnbull

// copied from https://github.com/dmyersturnbull/genomics-io/blob/master/core/src/main/java/org/pharmgkb/parsers/utils/HttpHeadResponse.java
package org.pharmgkb.parsers.utils;

import com.google.common.collect.ImmutableMap;

import javax.annotation.Nonnegative;
import javax.annotation.Nonnull;
import javax.annotation.concurrent.Immutable;
import java.io.IOException;
import java.net.HttpURLConnection;

dmyersturnbull

// copied from https://github.com/dmyersturnbull/genomics-io/blob/master/core/src/main/java/org/pharmgkb/parsers/utils/Try.java

package org.pharmgkb.parsers.utils;

import javax.annotation.Nonnull;
import javax.annotation.Nullable;
import java.util.Objects;
import java.util.Optional;
import java.util.function.Function;
import java.util.function.Supplier;

dmyersturnbull

import enum
from warnings import warn
from functools import wraps

class CodeIncompleteError(Exception): pass
class ImmatureWarning(UserWarning): pass
class ObsoleteWarning(UserWarning): pass

@enum.unique
class CodeStatus(enum.Enum):

dmyersturnbull

import enum

class SmartEnum(enum.Enum):
    """
    An enum with a classmethod `of` that parses a string of the member's name.
    """

    @classmethod
    def of(cls, v):
        """

dmyersturnbull

class FancyCmaps:
    """
    Useful colormaps for matplotlib. Most importantly:
        - white_red
        - white_blue
        - blue_white
        - white_black
    The built-in matplotlib ones don't actually go between pure color values!!
    For ex, 'Greys' doesn't go from pure white to pure black!
    So colormaps to consider avoiding include Greys, Blues, Greens, (etc), bwr, and seismic.

dmyersturnbull

class DevNull:
    """Pretends to write but doesn't."""

    def write(self, msg):
        pass

    def flush(self):
        pass

    def close(self):

dmyersturnbull

from matplotlib.axes import Axes

@classmethod
def despine(cls, ax: Axes) -> Axes:
    """
    Removes all spines and ticks on an Axes.
    """
    ax.set_yticks([])
    ax.set_yticks([])
    ax.set_xticklabels([])

dmyersturnbull

from typing import Type
from functools import wraps

def copy_docstring(from_obj: Type):
    """
    Decorator.
    Copies the docstring from `from_obj` to this function or class.
    """

    @wraps(copy_docstring)

dmyersturnbull

from IPython.display import display, Markdown, HTML
display(HTML("<style>.container { width:100% !important; }</style>"))