dpo

Contributing to Homebrew/Science

First of all, thank you for contributing to Homebrew/Science. The following guidelines are designed to help you write more efficient pull requests and / or issues.

Formula Guidelines

Please first read the Formula Cookbook. This section lists additional guidelines that should be followed in Homebrew/Science.

Tests

dpo

require 'formula'

class Jellyfish < Formula
  homepage 'http://www.cbcb.umd.edu/software/jellyfish/'
  url 'ftp://ftp.genome.umd.edu/pub/jellyfish/jellyfish-2.0.0.tar.gz'
  sha1 '65985a197e1fe57fd3965c055616eaafe0a748e8'

  fails_with :clang do
    cause 'gcc >= 4.4 is required to compile Jellyfish.'
  end

dpo

require 'formula'

class Bedops < Formula
  homepage 'https://github.com/bedops/bedops'
  url 'https://github.com/bedops/bedops/archive/v2.4.1-rc1.tar.gz'
  sha1 '436c769af8ffac70f4d7f02922915d3c71c5af88'
  head 'https://github.com/bedops/bedops.git'

  fails_with :clang
  fails_with :llvm

dpo

[dpo@Aragorn:test ]$ ./hs071_c

******************************************************************************
This program contains Ipopt, a library for large-scale nonlinear optimization.
 Ipopt is released as open source code under the Eclipse Public License (EPL).
         For more information visit http://projects.coin-or.org/Ipopt
******************************************************************************

This is Ipopt version 3.11.7, running with linear solver mumps.
NOTE: Other linear solvers might be more efficient (see Ipopt documentation).

dpo

require 'formula'

class Ipopt < Formula
  homepage 'https://projects.coin-or.org/Ipopt'
  url 'http://www.coin-or.org/download/source/Ipopt/Ipopt-3.11.7.tgz'
  sha1 '4547db1acbd65aad9edbed115a7812fbfd6d2d3a'
  head 'https://projects.coin-or.org/svn/Ipopt/trunk', :using => :svn

  option 'without-check', 'Skip build-time tests (not recommended)'

dpo

require 'formula'

class Velvet < Formula
  homepage 'http://www.ebi.ac.uk/~zerbino/velvet/'
  url 'http://www.ebi.ac.uk/~zerbino/velvet/velvet_1.2.10.tgz'
  sha1 '216f0941609abf3a73adbba19ef1f364df489d18'

  head 'https://github.com/dzerbino/velvet.git'

  option 'with-maxkmerlength=<value>', 'Specify max kmer length'

dpo

diff --git a/complex16/second.F b/complex16/second.F
index 77fb342..cf0acbd 100644
--- a/complex16/second.F
+++ b/complex16/second.F
@@ -23,10 +23,10 @@

 #ifdef _AIX
       REAL               ETIME_
-      EXTERNAL           ETIME_
+C     EXTERNAL           ETIME_

dpo

diff --git a/complex16/Examples/Makefile b/complex16/Examples/Makefile
index 900f2b6..d343e78 100644
--- a/complex16/Examples/Makefile
+++ b/complex16/Examples/Makefile
@@ -45,15 +45,15 @@ compare.$(PLAT).x: lib compare.o
 
 test:
    @( echo "==Testing DOUBLE COMPLEX version without implicit restart.=="; \
-   example.$(PLAT).x <  example.in; \
+   ./example.$(PLAT).x <  example.in; \

dpo

require 'formula'

class R < Formula
  homepage 'http://www.r-project.org'
  url 'http://cran.r-project.org/src/base/R-3/R-3.0.3.tar.gz'
  sha1 '82e83415d27a2fbbdcacb41c4aa14d8b36fdf470'
  head 'https://svn.r-project.org/R/trunk'

  option 'without-check', 'Skip build-time tests (not recommended)'

dpo

import sublime_plugin


class RunLatexBuildCommand(sublime_plugin.WindowCommand):

  def run(self, build_systems=None):

    if build_systems is None:
      return
    reset_to = build_systems[-1]