drio

type = ""
    split_name.each { |s| type = s if s =~ /csfasta|ftc|txr|cy5|cy3|qual/ }
    puts type

drio

type = ""
split_name.each { |s| type = s if s =~ /csfasta|ftc|txr|cy5|cy3|qual/ }
puts type

drio

drio@milhouse ~ $ df -h
Filesystem            Size  Used Avail Use% Mounted on
/dev/mapper/VolGroup00-LogVol00
                      128G  5.3G  116G   5% /
/dev/sda3              99M   28M   66M  30% /boot
tmpfs                  16G     0   16G   0% /dev/shm
/dev/mapper/md3000-slx
                       11T  1.1M   11T   1% /mnt/slx

drio

# Read first line and order the input
l1 = File.open("./input.txt", "r").read.split[1].split(',')

# Create a struct class to hold the stats per lane
line_stats = Struct.new(:c, :d, :a, :b)
# Instantiate a stat lines with the input data
l1_stats = line_stats.new(*l1)

# Display the contents of the struct
puts l1_stats.inspect

drio

 def methods_to_lambdas(mod)
   instance = Class.new { include mod }.new
   mod.instance_methods(false).inject(Hash.new) { |hash, meth|
     hash.update(
       meth.to_sym => lambda { |*args, &block|
         instance.send(meth, *args, &block)
       }
     )
   }
 end

drio

def methods_to_lambdas(mod)
  instance = Class.new { include mod }.new
  mod.instance_methods(false).inject(Hash.new) { |hash, meth|
    hash.update(
      meth.to_sym => lambda { |*args, &block|
        instance.send(meth, *args, &block)
      }
    )
  }
end

drio

def methods_to_lambdas(mod)
  instance = Class.new { include mod }.new
  mod.instance_methods(false).inject(Hash.new) { |hash, meth|
    hash.update(
      meth.to_sym => lambda { |*args, &block|
        instance.send(meth, *args, &block)
      }
    )
  }
end

drio

drio@milhouse ~/tmp/pcap $ gem search --source http://ruby.mocker.org/gems --remote cap

*** REMOTE GEMS ***

WARNING:  RubyGems 1.2+ index not found for:
        http://ruby.mocker.org/gems/

RubyGems will revert to legacy indexes degrading performance.
Bulk updating Gem source index for: http://ruby.mocker.org/gems/
acts_as_flux_capacitor (0.6.7, 0.6.6, 0.6.5, 0.6.4, 0.6.3, 0.6.2, 0.6.1, 0.6.0, 0.5.4, 0.5.3, 0.5.2, 0.5.0)

drio

Dear HGSC fellows,

As you already know we are facing the challenge of storing the new slx
data while we are running out of physical storage space @ the HGSC. In addition,
the amount of space required for the new Runs is getting bigger and bigger.

The way we have been dealing with data so far is not going to scale.
Keeping all analysis data in the cluster volumes is not an option anymore. 

Our idea is to archive part of the slx analysis data (almost everything) and 

drio

module M2
  def m2_meth
    puts "m2_meth"
  end

  def rufus
    self.stuff
  end
end