drio

bsub -q normal -J drio -m c81qa-05 -Is /bin/bash

drio

Asdfsaf

drio

 0 is
  1 eg.ptrie
  2 eg.ptrie II
  3 hgsc.bfast.pipe                                                                                                                        
  4 git.bfast
  5 synthetic pipe
  6 dnaa
  7 sequel console
  8 PE data
  9 picard

drio

Indenting Here Documents

var = <<'EOF'.gsub(/^\s+/, '')
    your text
    goes here
EOF

drio

class String
  def extra_slash!
    self.replace(self[-1] == "/" ? self : "#{self}/")
  end
end

drio

#!/usr/bin/env ruby19
#
# vim: set filetype=ruby expandtab tabstop=2 shiftwidth=2 tw=80
# 
# Dumps to csv (STDOUT) all the info about the SEAs
# 
# 
require 'ostruct'
require 'find'
require 'lib/helpers'

drio

bsub -q normal -J drio -m c81qb-16 -Is /bin/bash

drio

#!/usr/bin/env ruby
#
# Generates a fasta file that is more managable for 
# the illumina squasher.
#
fake_fname	 = "./fake_input.txt"
final_fname    	 = "./final.fa"
n_splits 	 = 3
contig_separator = "N" * 50 + "\n" + "N" * 50 

drio

@2_1589_151
G21212202211122221112022321322222122121122102120022
+
,7###,.*.&&1##%36)'%$))#)&&&#(,6$+,&:&/%4/)*+5&%+)
@2_1589_176
G21220022221220312022122012102202002210023302203000
+
,%%2*##4#$##%$##%()#$%0%#$%4+%$$$$#1&/&+$(*&/#'22$
@2_1589_190
G10231310332200221112132122212322123210213001201022

drio

These are the set of key changes we suggest to implement in order to successfully assimilate
the incoming HiSEQ instruments:

1. Transfer process from Instruments to Cluster.

Currently the two GAIIs are dumping to a single machine (slxdump). Then to the 
cluster. We suggest removing the intermidiate machine and make the 
instruments dump data directly to the cluster volumes. A similar process of what we 
are doing for SOLiD.