David Robbins drobbins

node rdfstoretest.js 
Attempting to create store...

node.js:201
        throw e; // process.nextTick error, or 'error' event on first tick
              ^
TypeError: Cannot read property 'arbiterOnly' of undefined
    at /Users/robbinsd/Dropbox/Repos/rdfstorenode/node_modules/rdfstore/node_modules/mongodb/lib/mongodb/connection/server.js:552:22
 at [object Object].checkoutReader (/Users/robbinsd/Dropbox/Repos/rdfstorenode/node_modules/rdfstore/node_modules/mongodb/lib/mongodb/connection/server.js:569:16)

This is an example federated query using the TCGA Roadmap. You may run the query at any SPARQL endpoint with SERVICE queries enables, such as [this one here](http://hydrogen.path.uab.edu/swobjects/sw?query=PREFIX+rdfs%3A%3Chttp%3A%2F%2Fwww.w3.org%2F2000%2F01%2Frdf-schema%23%3E%0D%0APREFIX+tcga%3A%3Chttp%3A%2F%2Fpurl.org%2Ftcga%2Fcore%23%3E%0D%0APREFIX+tcgameta%3A%3Chttp%3A%2F%2Fpurl.org%2Ftcga%2Fmetadata%23%3E%0D%0APREFIX+tcgaclin%3A%3Chttp%3A%2F%2Fpurl.org%2Ftcga%2Fclin%23%3E%0D%0APREFIX+tcgaclinProp%3A%3Chttp%3A%2F%2Fpurl.org%2Ftcga%2Fclin%23property%2F%3E%0D%0ASELECT+%3FpatientId+%3FtumorTissueSite+%3FageAtInitialDiagnosis+%3Fgender+%3Frace+%3FvitalStatus%0D%0AWHERE+%7B%0D%0A++SERVICE+%3Chttp%3A%2F%2Fagalpha.mathbiol.org%3A10035%2Frepositories%2Ftcga%3E+%7B%0D%0A++++%3Ffile+tcga%3Aplatform+%3Fplatform+.%0D%0A++++%3Fplatform+rdfs%3Alabel+%22mda_rppa_core%22+.%0D%0A++++%3Ffile+tcga%3AdiseaseStudy+%3FdiseaseStudy+.%0D%0A++++%3FdiseaseStudy+rdfs%3Alabel+%22gbm%22+.%0D%0A++++%3

Papers2 Library Cleanup

For a variety of reasons, my Papers2 library folder (~/Library/Application Support/Papers2) was cluttered with many duplicate papers, generally only one of which was linked to a document in Papers2. Here is how I cleaned it up.

From a Terminal, cd ~/Library/Application\ Support.
open .
Copy the Papers2 folder to the Desktop. This is your backup.
In Papers2, cmd+,, select Library, select Add next to "Rename files in library folder as:", and select Separator -> _ then click Apply.
Back in your Terminal, find ./ -iregex ".*[^_]\.pdf" -delete

If you want to see what's going to be deleted before doing it, run find ./ -iregex ".*[^_]\.pdf"

	<!DOCTYPE html>
	<html>
	<head>
	<title>CORS to DOM</title>
	</head>
	<body><div class="container">
	<div id="login" class="span-24 last" style="text-align:right" ></div>
	<div id="content"></div>
	<script type="text/javascript">
	//(function(){

	<html>
	<head>
	<title>jQuery + Quanah Error Demo</title>
	</head>
	<body>
	<a id="awesome">Click for Awesome</a>
	<script src="https://ajax.googleapis.com/ajax/libs/jquery/1.7.2/jquery.min.js" type="text/javascript" charset="utf-8"></script>
	<script src="https://raw.github.com/wilkinson/quanah/master/src/quanah.js" type="text/javascript" charset="utf-8"></script>
	<script type="text/javascript" charset="utf-8">
	(function(){

	always:

	processes.txt: always
	ps axf > processes.txt

	script: processes.txt
	awk 'BEGIN {print "#!/bin/bash";} /AG/ { print "kill -s sigusr2",$$1 }' processes.txt > sigsur2ag.sh
	chmod +x sigsur2ag.sh

	package atmmachine;
	import java.util.Date;
	import java.util.Scanner;
	/**
	*
	* @author Madai
	*/
	public class AtmMachine {

	private int id;

	public class AtmMachine {

	Account[] accounts;

	public static void main(String[] args) {

	int command;
	int id;

	for (int i=0; i<10; i++) {

	app = require('express')()

	app.get '/hi', (req, res) ->
	res.end "Hello World"

	myPatients = Patients.find().fetch();
	numPatients = myPatients.length;
	console.log("Hello from a module in Este. There are", numPatients, "patients available.");