Eric T. Dawson edawson
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| library(ggbio) | |
| library(grid) | |
| library(gridExtra) | |
| library(plyr) | |
| library(GenomicRanges) | |
| library(qgraph) | |
| multiplot <- function(..., plotlist=NULL, file, cols=1, layout=NULL) | |
| { | |
| require(grid) |
sjolsen
/ cudamap.cc
Last active
July 3, 2021 13:43
Combining memory-mapped I/O and CUDA mapped memory
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| #include <sys/mman.h> | |
| #include <fcntl.h> | |
| #include <unistd.h> | |
| #include <cuda_runtime.h> | |
| #include <cerrno> | |
| #include <cstring> | |
| #include <memory> | |
| #include <stdexcept> |
nathanhaigh
/ interleave_fastq.sh
Last active
February 21, 2025 10:46
Interleave reads from 2 FASTQ files and output to STDOUT.
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| #!/bin/bash | |
| # Usage: interleave_fastq.sh f.fastq r.fastq > interleaved.fastq | |
| # | |
| # Interleaves the reads of two FASTQ files specified on the | |
| # command line and outputs a single FASTQ file of STDOUT. | |
| # | |
| # Can interleave 100 million paired reads (200 million total | |
| # reads; a 2 x 22Gbyte files), in memory (/dev/shm), in 6m54s (414s) | |
| # | |
| # Latest code: https://gist.github.com/4544979 |
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