boegel · May 18, 2014 08:34
diff --git a/FoldX-3.0-beta6_partial.log b/FoldX-3.0-beta6_partial.log
 == 2014-05-18 10:34:18,306 main.EB_FoldX INFO 'This is EasyBuild 1.13.0dev (framework: 1.13.0dev, easyblocks: 1.13.0dev) on host node2156.delcatty.os.'
 == 2014-05-18 10:34:18,306 main.EB_FoldX INFO 'Init completed for application name FoldX version 3.0-beta6'
 == 2014-05-18 10:34:18,307 main.easyblock.<module> INFO 'Obtained application instance of for FoldX (easyblock: None)'
 == 2014-05-18 10:34:18,307 main.easyblock.<module> DEBUG 'Skip set to False'
 == 2014-05-18 10:34:18,307 main.module_generator DEBUG 'Determining module name for <easybuild.framework.easyconfig.easyconfig.EasyConfig object at 0x126acd0> (eb_ns: False)'
 == 2014-05-18 10:34:18,307 main.module_generator DEBUG "List of available module naming schemes: ['EasyBuildModuleNamingScheme']"
 == 2014-05-18 10:34:18,309 main.module_generator DEBUG 'Module name FoldX/3.0-beta6 validated'
 == 2014-05-18 10:34:18,309 main.module_generator DEBUG 'Obtained module name FoldX/3.0-beta6'
 == 2014-05-18 10:34:18,309 main.EB_FoldX INFO 'building and installing FoldX/3.0-beta6...'
 == 2014-05-18 10:34:18,309 main.EB_FoldX INFO 'fetching files...'
 == 2014-05-18 10:34:18,310 main.EB_FoldX INFO 'Starting fetch step'
 == 2014-05-18 10:34:18,310 main.easyconfig.templates DEBUG 'config: {'preinstallopts': ['', 'Extra prefix options for installation.', (3, 'build')], 'makeopts': ['', 'Extra options passed to make (default already has -j X)', (3, 'build')], 'moduleloadnoconflict': [False, "Don't check for conflicts, unload other versions instead ", (8, 'modules')], 'skip': [False, 'Skip existing software', (3, 'build')], 'cleanupoldbuild': [True, 'Boolean to remove (True) or backup (False) the previous build directory with identical name or not.', (4, 'file-management')], 'runtest': [None, 'Indicates if a test should be run after make; should specify argument after make (for e.g.,"test" for make test)', (3, 'build')], 'sources': [['%(name)s_30b6_linux64.zip'], 'List of source files', (3, 'build')], 'versionsuffix': ['', 'Additional suffix for software version (placed after toolchain name)', (3, 'build')], 'exts_defaultclass': [None, 'List of module for and name of the default extension class', (7, 'extensions')], 'keeppreviousinstall': [False, 'Boolean to keep the previous installation with identical name. Experts only!', (4, 'file-management')], 'checksums': [[], 'Checksums for sources and patches', (3, 'build')], 'skipsteps': [[], 'Skip these steps', (3, 'build')], 'parsed': [True, 'This is a parsed easyconfig', 'HIDDEN'], 'builddependencies': [[], 'List of build dependencies', (5, 'dependencies')], 'modextravars': [{}, 'Extra environment variables to be added to module file', (8, 'modules')], 'unpack_options': [None, 'Extra options for unpacking source', (3, 'build')], 'group': [None, 'Name of the user group for which the software should be available', (6, 'license')], 'patches': [[], 'List of patches to apply', (3, 'build')], 'easyblock': ['ConfigureMake', 'EasyBlock to use for building', (3, 'build')], 'easybuild_version': [None, 'EasyBuild-version this spec-file was written for', (3, 'build')], 'keepsymlinks': [False, 'Boolean to determine whether symlinks are to be kept during copying or if the content of the files pointed to should be copied', (4, 'file-management')], 'start_dir': [None, 'Path to start the make in. If the path is absolute, use that path. If not, this is added to the guessed path.', (4, 'file-management')], 'version': ['3.0-beta6', 'Version of software', (0, 'mandatory')], 'buildininstalldir': [False, 'Boolean to build (True) or not build (False) in the installation directory', (4, 'file-management')], 'allow_system_deps': [[], 'Allow listed system dependencies (format: (<name>, <version>))', (5, 'dependencies')], 'osdependencies': [[], 'OS dependencies that should be present on the system', (5, 'dependencies')], 'buildstats': [None, 'A list of dicts with build statistics', (9, 'other')], 'homepage': ['http://http://foldx.crg.es/', 'The homepage of the software', (0, 'mandatory')], 'premakeopts': ['', 'Extra options pre-passed to build command.', (3, 'build')], 'license_file': [None, 'License file for software', (6, 'license')], 'tests': [[], 'List of test-scripts to run after install. A test script should return a non-zero exit status to fail', (3, 'build')], 'license_server': [None, 'License server for software', (6, 'license')], 'description': ['FoldX is used to provide a fast and quantitative estimation of the importance of the interactions\n contributing to the stability of proteins and protein complexes.', 'A short description of the software', (0, 'mandatory')], 'modextrapaths': [{}, 'Extra paths to be prepended in module file', (8, 'modules')], 'exts_list': [[], 'List with extensions added to the base installation', (7, 'extensions')], 'docurls': [None, 'List of urls with documentation of the software (not necessarily on homepage)', (0, 'mandatory')], 'stop': [None, 'Keyword to halt the build process after a certain step.', (3, 'build')], 'source_urls': [[], 'List of URLs for source files', (3, 'build')], 'exts_classmap': [{}, 'Map of extension name to class for handling build and installation.', (7, 'extensions')], 'moduleforceunload': [False, 'Force unload of all modules when loading the extension', (8, 'modules')], 'dependencies': [[], 'List of dependencies', (5, 'dependencies')], 'moduleclass': ['bio', 'Module class to be used for this software', (8, 'modules')], 'key': [None, 'Key for installing software', (6, 'license')], 'toolchain': [{'version': 'dummy', 'name': 'dummy'}, 'Name and version of toolchain', (0, 'mandatory')], 'parallel': [None, 'Degree of parallelism for e.g. make (default: based on the number of cores, active cpuset and restrictions in ulimit)', (3, 'build')], 'exts_filter': [None, 'Extension filter details: template for cmd and input to cmd (templates for name, version and src).', (7, 'extensions')], 'versionprefix': ['', 'Additional prefix for software version (placed before version and toolchain name)', (3, 'build')], 'sanity_check_paths': [{'files': ['bin/%(namelower)s64Linux', 'rotabase.txt'], 'dirs': []}, "List of files and directories to check (format: {'files':<list>, 'dirs':<list>})", (3, 'build')], 'installopts': ['', 'Extra options for installation', (3, 'build')], 'onlytcmod': [False, 'Boolean/string to indicate if the toolchain should only load the environment with module (True) or also set all other variables (False) like compiler CC etc (if string: comma separated list of variables that will be ignored).', (2, 'toolchain')], 'unwanted_env_vars': [[], "List of environment variables that shouldn't be set during build", (3, 'build')], 'name': ['FoldX', 'Name of software', (0, 'mandatory')], 'maxparallel': [None, 'Max degree of parallelism', (3, 'build')], 'preconfigopts': ['', 'Extra options pre-passed to configure.', (3, 'build')], 'sanity_check_commands': [[], "format: [(name, options)] e.g. [('gzip','-h')]. Using a non-tuple is equivalent to (name, '-h')", (3, 'build')], 'license_server_port': [None, 'Port for license server', (6, 'license')], 'dontcreateinstalldir': [False, 'Boolean to create (False) or not create (True) the install directory', (4, 'file-management')], 'cleanupoldinstall': [True, 'Boolean to remove (True) or backup (False) the previous install directory with identical name or not.', (4, 'file-management')], 'toolchainopts': [None, 'Extra options for compilers', (2, 'toolchain')], 'software_license': [None, 'Software license', (0, 'mandatory')], 'configopts': ['', 'Extra options passed to configure (default already has --prefix)', (3, 'build')], 'software_license_urls': [None, 'List of software license locations', (0, 'mandatory')]}'
 == 2014-05-18 10:34:18,311 main.easyconfig.templates DEBUG 'version found in easyconfig is 3.0-beta6'
 == 2014-05-18 10:34:18,312 main.easyconfig.templates DEBUG 'version found in easyconfig is 3.0-beta6'
 == 2014-05-18 10:34:18,312 main.easyconfig.templates DEBUG 'version found in easyconfig is 3.0-beta6'
 == 2014-05-18 10:34:18,312 main.easyconfig.templates DEBUG 'name: name, config: FoldX'
 == 2014-05-18 10:34:18,312 main.easyconfig.templates DEBUG 'name: version, config: 3.0-beta6'
 == 2014-05-18 10:34:18,312 main.easyconfig.templates DEBUG 'name: versionsuffix, config: '
 == 2014-05-18 10:34:18,313 main.easyconfig.templates DEBUG 'name: versionprefix, config: '
 == 2014-05-18 10:34:18,313 main.easyconfig.templates DEBUG 'config: {'preinstallopts': ['', 'Extra prefix options for installation.', (3, 'build')], 'makeopts': ['', 'Extra options passed to make (default already has -j X)', (3, 'build')], 'moduleloadnoconflict': [False, "Don't check for conflicts, unload other versions instead ", (8, 'modules')], 'skip': [False, 'Skip existing software', (3, 'build')], 'cleanupoldbuild': [True, 'Boolean to remove (True) or backup (False) the previous build directory with identical name or not.', (4, 'file-management')], 'runtest': [None, 'Indicates if a test should be run after make; should specify argument after make (for e.g.,"test" for make test)', (3, 'build')], 'sources': [['%(name)s_30b6_linux64.zip'], 'List of source files', (3, 'build')], 'versionsuffix': ['', 'Additional suffix for software version (placed after toolchain name)', (3, 'build')], 'exts_defaultclass': [None, 'List of module for and name of the default extension class', (7, 'extensions')], 'keeppreviousinstall': [False, 'Boolean to keep the previous installation with identical name. Experts only!', (4, 'file-management')], 'checksums': [[], 'Checksums for sources and patches', (3, 'build')], 'skipsteps': [[], 'Skip these steps', (3, 'build')], 'parsed': [True, 'This is a parsed easyconfig', 'HIDDEN'], 'builddependencies': [[], 'List of build dependencies', (5, 'dependencies')], 'modextravars': [{}, 'Extra environment variables to be added to module file', (8, 'modules')], 'unpack_options': [None, 'Extra options for unpacking source', (3, 'build')], 'group': [None, 'Name of the user group for which the software should be available', (6, 'license')], 'patches': [[], 'List of patches to apply', (3, 'build')], 'easyblock': ['ConfigureMake', 'EasyBlock to use for building', (3, 'build')], 'easybuild_version': [None, 'EasyBuild-version this spec-file was written for', (3, 'build')], 'keepsymlinks': [False, 'Boolean to determine whether symlinks are to be kept during copying or if the content of the files pointed to should be copied', (4, 'file-management')], 'start_dir': [None, 'Path to start the make in. If the path is absolute, use that path. If not, this is added to the guessed path.', (4, 'file-management')], 'version': ['3.0-beta6', 'Version of software', (0, 'mandatory')], 'buildininstalldir': [False, 'Boolean to build (True) or not build (False) in the installation directory', (4, 'file-management')], 'allow_system_deps': [[], 'Allow listed system dependencies (format: (<name>, <version>))', (5, 'dependencies')], 'osdependencies': [[], 'OS dependencies that should be present on the system', (5, 'dependencies')], 'buildstats': [None, 'A list of dicts with build statistics', (9, 'other')], 'homepage': ['http://http://foldx.crg.es/', 'The homepage of the software', (0, 'mandatory')], 'premakeopts': ['', 'Extra options pre-passed to build command.', (3, 'build')], 'license_file': [None, 'License file for software', (6, 'license')], 'tests': [[], 'List of test-scripts to run after install. A test script should return a non-zero exit status to fail', (3, 'build')], 'license_server': [None, 'License server for software', (6, 'license')], 'description': ['FoldX is used to provide a fast and quantitative estimation of the importance of the interactions\n contributing to the stability of proteins and protein complexes.', 'A short description of the software', (0, 'mandatory')], 'modextrapaths': [{}, 'Extra paths to be prepended in module file', (8, 'modules')], 'exts_list': [[], 'List with extensions added to the base installation', (7, 'extensions')], 'docurls': [None, 'List of urls with documentation of the software (not necessarily on homepage)', (0, 'mandatory')], 'stop': [None, 'Keyword to halt the build process after a certain step.', (3, 'build')], 'source_urls': [[], 'List of URLs for source files', (3, 'build')], 'exts_classmap': [{}, 'Map of extension name to class for handling build and installation.', (7, 'extensions')], 'moduleforceunload': [False, 'Force unload of all modules when loading the extension', (8, 'modules')], 'dependencies': [[], 'List of dependencies', (5, 'dependencies')], 'moduleclass': ['bio', 'Module class to be used for this software', (8, 'modules')], 'key': [None, 'Key for installing software', (6, 'license')], 'toolchain': [{'version': 'dummy', 'name': 'dummy'}, 'Name and version of toolchain', (0, 'mandatory')], 'parallel': [None, 'Degree of parallelism for e.g. make (default: based on the number of cores, active cpuset and restrictions in ulimit)', (3, 'build')], 'exts_filter': [None, 'Extension filter details: template for cmd and input to cmd (templates for name, version and src).', (7, 'extensions')], 'versionprefix': ['', 'Additional prefix for software version (placed before version and toolchain name)', (3, 'build')], 'sanity_check_paths': [{'files': ['bin/%(namelower)s64Linux', 'rotabase.txt'], 'dirs': []}, "List of files and directories to check (format: {'files':<list>, 'dirs':<list>})", (3, 'build')], 'installopts': ['', 'Extra options for installation', (3, 'build')], 'onlytcmod': [False, 'Boolean/string to indicate if the toolchain should only load the environment with module (True) or also set all other variables (False) like compiler CC etc (if string: comma separated list of variables that will be ignored).', (2, 'toolchain')], 'unwanted_env_vars': [[], "List of environment variables that shouldn't be set during build", (3, 'build')], 'name': ['FoldX', 'Name of software', (0, 'mandatory')], 'maxparallel': [None, 'Max degree of parallelism', (3, 'build')], 'preconfigopts': ['', 'Extra options pre-passed to configure.', (3, 'build')], 'sanity_check_commands': [[], "format: [(name, options)] e.g. [('gzip','-h')]. Using a non-tuple is equivalent to (name, '-h')", (3, 'build')], 'license_server_port': [None, 'Port for license server', (6, 'license')], 'dontcreateinstalldir': [False, 'Boolean to create (False) or not create (True) the install directory', (4, 'file-management')], 'cleanupoldinstall': [True, 'Boolean to remove (True) or backup (False) the previous install directory with identical name or not.', (4, 'file-management')], 'toolchainopts': [None, 'Extra options for compilers', (2, 'toolchain')], 'software_license': [None, 'Software license', (0, 'mandatory')], 'configopts': ['', 'Extra options passed to configure (default already has --prefix)', (3, 'build')], 'software_license_urls': [None, 'List of software license locations', (0, 'mandatory')]}'
 == 2014-05-18 10:34:18,315 main.easyconfig.templates DEBUG 'version found in easyconfig is 3.0-beta6'
 == 2014-05-18 10:34:18,315 main.easyconfig.templates DEBUG 'version found in easyconfig is 3.0-beta6'
 == 2014-05-18 10:34:18,315 main.easyconfig.templates DEBUG 'version found in easyconfig is 3.0-beta6'
 == 2014-05-18 10:34:18,315 main.easyconfig.templates DEBUG 'name: name, config: FoldX'
 == 2014-05-18 10:34:18,315 main.easyconfig.templates DEBUG 'name: version, config: 3.0-beta6'
 == 2014-05-18 10:34:18,316 main.easyconfig.templates DEBUG 'name: versionsuffix, config: '
 == 2014-05-18 10:34:18,316 main.easyconfig.templates DEBUG 'name: versionprefix, config: '
 == 2014-05-18 10:34:18,316 main.EB_FoldX INFO 'Running method fetch_step part of step fetch'
 == 2014-05-18 10:34:18,316 main.EB_FoldX WARNING "Easyconfig does not specify an EasyBuild-version (key 'easybuild_version')! Assuming the latest version"
 == 2014-05-18 10:34:18,316 main.run DEBUG 'run_cmd: running cmd which eb (in /vscmnt/gent_vulpix/_/user/home/gent/vsc400/vsc40023)'
 == 2014-05-18 10:34:18,334 main.run DEBUG 'cmd "which eb" exited with exitcode 0 and output:\n/user/scratch/gent/vsc400/vsc40023/easybuild_easy_installed/bin/eb\n'
 == 2014-05-18 10:34:18,335 main.run DEBUG 'Using default regular expression: (?<![(,-]|\\w)(?:error|segmentation fault|failed)(?![(,-]|\\.?\\w)'
 == 2014-05-18 10:34:18,335 main.easyconfig.tools DEBUG 'Also considering installation prefix /user/scratch/gent/vsc400/vsc40023/easybuild_easy_installed...'
 == 2014-05-18 10:34:18,335 main.easyconfig.tools DEBUG 'Looking for easybuild/easyconfigs in path /user/scratch/gent/vsc400/vsc40023/easybuild_easy_installed/lib/python2.6/site-packages/easybuild_easyconfigs-1.13.0.0dev-py2.6.egg/easybuild/easyconfigs/easybuild/easyconfigs'
 == 2014-05-18 10:34:18,335 main.easyconfig.tools DEBUG 'Looking for easybuild/easyconfigs in path /user/scratch/gent/vsc400/vsc40023/easybuild_easy_installed/lib/python2.6/site-packages/easybuild_easyconfigs-1.13.0.0dev-py2.6.egg/easybuild/easyconfigs/easybuild/easyconfigs'
 == 2014-05-18 10:34:18,336 main.easyconfig.tools DEBUG 'Looking for easybuild/easyconfigs in path /user/scratchdelcatty/gent/gvo000/gvo00002/vsc40023/easybuild_easy_installed/lib/python2.6/site-packages/easybuild_framework-1.13.0dev-py2.6.egg/easybuild/easybuild/easyconfigs'
 == 2014-05-18 10:34:18,336 main.easyconfig.tools DEBUG 'Looking for easybuild/easyconfigs in path /user/scratch/gent/vsc400/vsc40023/easybuild_easy_installed/lib/python2.6/site-packages/easybuild_easyconfigs-1.13.0.0dev-py2.6.egg/easybuild/easyconfigs'
 == 2014-05-18 10:34:18,336 main.easyconfig.tools DEBUG 'Added /user/scratch/gent/vsc400/vsc40023/easybuild_easy_installed/lib/python2.6/site-packages/easybuild_easyconfigs-1.13.0.0dev-py2.6.egg/easybuild/easyconfigs to list of paths for easybuild/easyconfigs'
 == 2014-05-18 10:34:18,336 main.easyconfig.tools DEBUG 'Looking for easybuild/easyconfigs in path /user/scratch/gent/vsc400/vsc40023/easybuild_easy_installed/lib/python2.6/site-packages/easybuild_easyblocks-1.13.0dev-py2.6.egg/easybuild/easyconfigs'
 == 2014-05-18 10:34:18,337 main.easyconfig.tools DEBUG 'Looking for easybuild/easyconfigs in path /user/scratch/gent/vsc400/vsc40023/easybuild_easy_installed/lib/python2.6/site-packages/easybuild_framework-1.13.0dev-py2.6.egg/easybuild/easyconfigs'
 == 2014-05-18 10:34:18,337 main.easyconfig.tools DEBUG 'Looking for easybuild/easyconfigs in path /user/home/gent/vsc400/vsc40023/.local/lib/python2.6/site-packages/keyring-3.7-py2.6.egg/easybuild/easyconfigs'
 == 2014-05-18 10:34:18,337 main.easyconfig.tools DEBUG 'Looking for easybuild/easyconfigs in path /user/scratch/gent/vsc400/vsc40023/easybuild_easy_installed/lib/python2.6/site-packages/easybuild/easyconfigs'
 == 2014-05-18 10:34:18,337 main.easyconfig.tools DEBUG 'Looking for easybuild/easyconfigs in path /user/scratch/gent/vsc400/vsc40023/easybuild_easy_installed/lib64/python2.6/site-packages/easybuild/easyconfigs'
 == 2014-05-18 10:34:18,338 main.easyconfig.tools DEBUG 'Looking for easybuild/easyconfigs in path /user/home/gent/vsc400/vsc40023/.local/lib/python2.6/site-packages/easybuild/easyconfigs'
 == 2014-05-18 10:34:18,338 main.easyconfig.tools DEBUG 'Looking for easybuild/easyconfigs in path /user/home/gent/vsc400/vsc40023/scratch/easybuild_easy_installed/lib/python2.6/site-packages/easybuild/easyconfigs'
 == 2014-05-18 10:34:18,338 main.easyconfig.tools DEBUG 'Looking for easybuild/easyconfigs in path /user/home/gent/vsc400/vsc40023/scratch/easybuild_easy_installed/lib64/python2.6/site-packages/easybuild/easyconfigs'
 == 2014-05-18 10:34:18,338 main.easyconfig.tools DEBUG 'Looking for easybuild/easyconfigs in path /usr/lib64/python26.zip/easybuild/easyconfigs'
 == 2014-05-18 10:34:18,338 main.easyconfig.tools DEBUG 'Looking for easybuild/easyconfigs in path /usr/lib64/python2.6/easybuild/easyconfigs'
 == 2014-05-18 10:34:18,339 main.easyconfig.tools DEBUG 'Looking for easybuild/easyconfigs in path /usr/lib64/python2.6/plat-linux2/easybuild/easyconfigs'
 == 2014-05-18 10:34:18,339 main.easyconfig.tools DEBUG 'Looking for easybuild/easyconfigs in path /usr/lib64/python2.6/lib-tk/easybuild/easyconfigs'
 == 2014-05-18 10:34:18,339 main.easyconfig.tools DEBUG 'Looking for easybuild/easyconfigs in path /usr/lib64/python2.6/lib-old/easybuild/easyconfigs'
 == 2014-05-18 10:34:18,339 main.easyconfig.tools DEBUG 'Looking for easybuild/easyconfigs in path /usr/lib64/python2.6/lib-dynload/easybuild/easyconfigs'
 == 2014-05-18 10:34:18,339 main.easyconfig.tools DEBUG 'Looking for easybuild/easyconfigs in path /usr/lib64/python2.6/site-packages/easybuild/easyconfigs'
 == 2014-05-18 10:34:18,339 main.easyconfig.tools DEBUG 'Looking for easybuild/easyconfigs in path /usr/lib64/python2.6/site-packages/pbs/easybuild/easyconfigs'
 == 2014-05-18 10:34:18,340 main.easyconfig.tools DEBUG 'Looking for easybuild/easyconfigs in path /usr/lib/python2.6/site-packages/easybuild/easyconfigs'
 == 2014-05-18 10:34:18,340 main.easyconfig.tools DEBUG 'Looking for easybuild/easyconfigs in path /usr/lib/python2.6/site-packages/setuptools-0.6c11-py2.6.egg-info/easybuild/easyconfigs'
 == 2014-05-18 10:34:18,340 main.easyconfig.tools DEBUG 'Looking for easybuild/easyconfigs in path /user/scratch/gent/vsc400/vsc40023/easybuild_easy_installed/lib64/python2.6/site-packages/easybuild/easyconfigs'
 == 2014-05-18 10:34:18,340 main.easyconfig.tools DEBUG 'Looking for easybuild/easyconfigs in path /user/home/gent/vsc400/vsc40023/scratch/easybuild_easy_installed/lib64/python2.6/site-packages/easybuild/easyconfigs'
 == 2014-05-18 10:34:18,340 main.easyconfig.tools DEBUG 'Looking for easybuild/easyconfigs in path /usr/lib/python2.6/site-packages/git/ext/gitdb/easybuild/easyconfigs'
 == 2014-05-18 10:34:18,341 main.easyconfig.tools DEBUG 'Looking for easybuild/easyconfigs in path /usr/lib64/python2.6/site-packages/gitdb/ext/async/easybuild/easyconfigs'
 == 2014-05-18 10:34:18,341 main.easyconfig.tools DEBUG 'Looking for easybuild/easyconfigs in path /usr/lib64/python2.6/site-packages/gitdb/ext/smmap/easybuild/easyconfigs'
 == 2014-05-18 10:34:18,341 main.easyconfig.tools DEBUG 'Looking for easybuild/easyconfigs in path ../easybuild/easyconfigs'
 == 2014-05-18 10:34:18,341 main.easyconfig.tools DEBUG 'Looking for easybuild/easyconfigs in path /usr/lib/graphviz/python/easybuild/easyconfigs'
 == 2014-05-18 10:34:18,341 main.easyconfig.tools DEBUG 'Looking for easybuild/easyconfigs in path /usr/lib64/graphviz/python/easybuild/easyconfigs'
 == 2014-05-18 10:34:18,342 main.easyconfig.tools DEBUG 'Looking for easybuild/easyconfigs in path /user/scratch/gent/vsc400/vsc40023/easybuild_easy_installed/easybuild/easyconfigs'
 == 2014-05-18 10:34:18,389 main.EB_FoldX INFO 'Found file FoldX_30b6_linux64.zip at /apps/gent/source/f/FoldX/FoldX_30b6_linux64.zip'
 == 2014-05-18 10:34:18,390 main.EB_FoldX DEBUG 'File /apps/gent/source/f/FoldX/FoldX_30b6_linux64.zip found for source FoldX_30b6_linux64.zip'
 == 2014-05-18 10:34:18,390 main.EB_FoldX INFO "Added sources: [{'path': '/apps/gent/source/f/FoldX/FoldX_30b6_linux64.zip', 'cmd': None, 'finalpath': None, 'name': 'FoldX_30b6_linux64.zip', 'checksum': None}]"
 == 2014-05-18 10:34:18,391 main.EB_FoldX INFO 'no patches provided'
 == 2014-05-18 10:34:18,391 main.filetools DEBUG 'Using blocksize 16777216 for calculating the checksum'
 == 2014-05-18 10:34:18,436 main.EB_FoldX INFO 'md5 checksum for /apps/gent/source/f/FoldX/FoldX_30b6_linux64.zip: d3264460a4fe08b57553ebcdaad2dcad'
 == 2014-05-18 10:34:18,442 main.affinity.<module> DEBUG 'sched_getaffinity for pid 59333 returned cpuset 9'
 == 2014-05-18 10:34:18,443 main.run DEBUG 'run_cmd: running cmd ulimit -u (in /vscmnt/gent_vulpix/_/user/home/gent/vsc400/vsc40023)'
 == 2014-05-18 10:34:18,464 main.run DEBUG 'cmd "ulimit -u" exited with exitcode 0 and output:\n515833\n'
 == 2014-05-18 10:34:18,465 main.run DEBUG 'Using default regular expression: (?<![(,-]|\\w)(?:error|segmentation fault|failed)(?![(,-]|\\.?\\w)'
 == 2014-05-18 10:34:18,465 main.EB_FoldX INFO 'Setting parallelism: 1'
 == 2014-05-18 10:34:18,465 main.EB_FoldX INFO "Checking dirs that need to be created: ['/user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/FoldX', '/user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/modules/all/FoldX', '/user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/modules/bio/FoldX']"
 == 2014-05-18 10:34:18,467 main.filetools DEBUG 'Not creating existing path /user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/FoldX'
 == 2014-05-18 10:34:18,467 main.filetools DEBUG 'Not creating existing path /user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/modules/all/FoldX'
 == 2014-05-18 10:34:18,470 main.filetools DEBUG 'Not creating existing path /user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/modules/bio/FoldX'
 == 2014-05-18 10:34:18,470 main.EB_FoldX INFO 'creating build dir, resetting environment...'
 == 2014-05-18 10:34:18,470 main.EB_FoldX INFO 'Starting ready step'
 == 2014-05-18 10:34:18,471 main.easyconfig.templates DEBUG 'config: {'preinstallopts': ['', 'Extra prefix options for installation.', (3, 'build')], 'makeopts': ['', 'Extra options passed to make (default already has -j X)', (3, 'build')], 'moduleloadnoconflict': [False, "Don't check for conflicts, unload other versions instead ", (8, 'modules')], 'skip': [False, 'Skip existing software', (3, 'build')], 'cleanupoldbuild': [True, 'Boolean to remove (True) or backup (False) the previous build directory with identical name or not.', (4, 'file-management')], 'runtest': [None, 'Indicates if a test should be run after make; should specify argument after make (for e.g.,"test" for make test)', (3, 'build')], 'sources': [['%(name)s_30b6_linux64.zip'], 'List of source files', (3, 'build')], 'versionsuffix': ['', 'Additional suffix for software version (placed after toolchain name)', (3, 'build')], 'exts_defaultclass': [None, 'List of module for and name of the default extension class', (7, 'extensions')], 'keeppreviousinstall': [False, 'Boolean to keep the previous installation with identical name. Experts only!', (4, 'file-management')], 'checksums': [[], 'Checksums for sources and patches', (3, 'build')], 'skipsteps': [[], 'Skip these steps', (3, 'build')], 'parsed': [True, 'This is a parsed easyconfig', 'HIDDEN'], 'builddependencies': [[], 'List of build dependencies', (5, 'dependencies')], 'modextravars': [{}, 'Extra environment variables to be added to module file', (8, 'modules')], 'unpack_options': [None, 'Extra options for unpacking source', (3, 'build')], 'group': [None, 'Name of the user group for which the software should be available', (6, 'license')], 'patches': [[], 'List of patches to apply', (3, 'build')], 'easyblock': ['ConfigureMake', 'EasyBlock to use for building', (3, 'build')], 'easybuild_version': [None, 'EasyBuild-version this spec-file was written for', (3, 'build')], 'keepsymlinks': [False, 'Boolean to determine whether symlinks are to be kept during copying or if the content of the files pointed to should be copied', (4, 'file-management')], 'start_dir': [None, 'Path to start the make in. If the path is absolute, use that path. If not, this is added to the guessed path.', (4, 'file-management')], 'version': ['3.0-beta6', 'Version of software', (0, 'mandatory')], 'buildininstalldir': [False, 'Boolean to build (True) or not build (False) in the installation directory', (4, 'file-management')], 'allow_system_deps': [[], 'Allow listed system dependencies (format: (<name>, <version>))', (5, 'dependencies')], 'osdependencies': [[], 'OS dependencies that should be present on the system', (5, 'dependencies')], 'buildstats': [None, 'A list of dicts with build statistics', (9, 'other')], 'homepage': ['http://http://foldx.crg.es/', 'The homepage of the software', (0, 'mandatory')], 'premakeopts': ['', 'Extra options pre-passed to build command.', (3, 'build')], 'license_file': [None, 'License file for software', (6, 'license')], 'tests': [[], 'List of test-scripts to run after install. A test script should return a non-zero exit status to fail', (3, 'build')], 'license_server': [None, 'License server for software', (6, 'license')], 'description': ['FoldX is used to provide a fast and quantitative estimation of the importance of the interactions\n contributing to the stability of proteins and protein complexes.', 'A short description of the software', (0, 'mandatory')], 'modextrapaths': [{}, 'Extra paths to be prepended in module file', (8, 'modules')], 'exts_list': [[], 'List with extensions added to the base installation', (7, 'extensions')], 'docurls': [None, 'List of urls with documentation of the software (not necessarily on homepage)', (0, 'mandatory')], 'stop': [None, 'Keyword to halt the build process after a certain step.', (3, 'build')], 'source_urls': [[], 'List of URLs for source files', (3, 'build')], 'exts_classmap': [{}, 'Map of extension name to class for handling build and installation.', (7, 'extensions')], 'moduleforceunload': [False, 'Force unload of all modules when loading the extension', (8, 'modules')], 'dependencies': [[], 'List of dependencies', (5, 'dependencies')], 'moduleclass': ['bio', 'Module class to be used for this software', (8, 'modules')], 'key': [None, 'Key for installing software', (6, 'license')], 'toolchain': [{'version': 'dummy', 'name': 'dummy'}, 'Name and version of toolchain', (0, 'mandatory')], 'parallel': [1, 'Degree of parallelism for e.g. make (default: based on the number of cores, active cpuset and restrictions in ulimit)', (3, 'build')], 'exts_filter': [None, 'Extension filter details: template for cmd and input to cmd (templates for name, version and src).', (7, 'extensions')], 'versionprefix': ['', 'Additional prefix for software version (placed before version and toolchain name)', (3, 'build')], 'sanity_check_paths': [{'files': ['bin/%(namelower)s64Linux', 'rotabase.txt'], 'dirs': []}, "List of files and directories to check (format: {'files':<list>, 'dirs':<list>})", (3, 'build')], 'installopts': ['', 'Extra options for installation', (3, 'build')], 'onlytcmod': [False, 'Boolean/string to indicate if the toolchain should only load the environment with module (True) or also set all other variables (False) like compiler CC etc (if string: comma separated list of variables that will be ignored).', (2, 'toolchain')], 'unwanted_env_vars': [[], "List of environment variables that shouldn't be set during build", (3, 'build')], 'name': ['FoldX', 'Name of software', (0, 'mandatory')], 'maxparallel': [None, 'Max degree of parallelism', (3, 'build')], 'preconfigopts': ['', 'Extra options pre-passed to configure.', (3, 'build')], 'sanity_check_commands': [[], "format: [(name, options)] e.g. [('gzip','-h')]. Using a non-tuple is equivalent to (name, '-h')", (3, 'build')], 'license_server_port': [None, 'Port for license server', (6, 'license')], 'dontcreateinstalldir': [False, 'Boolean to create (False) or not create (True) the install directory', (4, 'file-management')], 'cleanupoldinstall': [True, 'Boolean to remove (True) or backup (False) the previous install directory with identical name or not.', (4, 'file-management')], 'toolchainopts': [None, 'Extra options for compilers', (2, 'toolchain')], 'software_license': [None, 'Software license', (0, 'mandatory')], 'configopts': ['', 'Extra options passed to configure (default already has --prefix)', (3, 'build')], 'software_license_urls': [None, 'List of software license locations', (0, 'mandatory')]}'
 == 2014-05-18 10:34:18,472 main.easyconfig.templates DEBUG 'version found in easyconfig is 3.0-beta6'
 == 2014-05-18 10:34:18,473 main.easyconfig.templates DEBUG 'version found in easyconfig is 3.0-beta6'
 == 2014-05-18 10:34:18,473 main.easyconfig.templates DEBUG 'version found in easyconfig is 3.0-beta6'
 == 2014-05-18 10:34:18,473 main.easyconfig.templates DEBUG 'name: name, config: FoldX'
 == 2014-05-18 10:34:18,473 main.easyconfig.templates DEBUG 'name: version, config: 3.0-beta6'
 == 2014-05-18 10:34:18,473 main.easyconfig.templates DEBUG 'name: versionsuffix, config: '
 == 2014-05-18 10:34:18,474 main.easyconfig.templates DEBUG 'name: versionprefix, config: '
 == 2014-05-18 10:34:18,474 main.easyconfig.templates DEBUG 'config: {'preinstallopts': ['', 'Extra prefix options for installation.', (3, 'build')], 'makeopts': ['', 'Extra options passed to make (default already has -j X)', (3, 'build')], 'moduleloadnoconflict': [False, "Don't check for conflicts, unload other versions instead ", (8, 'modules')], 'skip': [False, 'Skip existing software', (3, 'build')], 'cleanupoldbuild': [True, 'Boolean to remove (True) or backup (False) the previous build directory with identical name or not.', (4, 'file-management')], 'runtest': [None, 'Indicates if a test should be run after make; should specify argument after make (for e.g.,"test" for make test)', (3, 'build')], 'sources': [['%(name)s_30b6_linux64.zip'], 'List of source files', (3, 'build')], 'versionsuffix': ['', 'Additional suffix for software version (placed after toolchain name)', (3, 'build')], 'exts_defaultclass': [None, 'List of module for and name of the default extension class', (7, 'extensions')], 'keeppreviousinstall': [False, 'Boolean to keep the previous installation with identical name. Experts only!', (4, 'file-management')], 'checksums': [[], 'Checksums for sources and patches', (3, 'build')], 'skipsteps': [[], 'Skip these steps', (3, 'build')], 'parsed': [True, 'This is a parsed easyconfig', 'HIDDEN'], 'builddependencies': [[], 'List of build dependencies', (5, 'dependencies')], 'modextravars': [{}, 'Extra environment variables to be added to module file', (8, 'modules')], 'unpack_options': [None, 'Extra options for unpacking source', (3, 'build')], 'group': [None, 'Name of the user group for which the software should be available', (6, 'license')], 'patches': [[], 'List of patches to apply', (3, 'build')], 'easyblock': ['ConfigureMake', 'EasyBlock to use for building', (3, 'build')], 'easybuild_version': [None, 'EasyBuild-version this spec-file was written for', (3, 'build')], 'keepsymlinks': [False, 'Boolean to determine whether symlinks are to be kept during copying or if the content of the files pointed to should be copied', (4, 'file-management')], 'start_dir': [None, 'Path to start the make in. If the path is absolute, use that path. If not, this is added to the guessed path.', (4, 'file-management')], 'version': ['3.0-beta6', 'Version of software', (0, 'mandatory')], 'buildininstalldir': [False, 'Boolean to build (True) or not build (False) in the installation directory', (4, 'file-management')], 'allow_system_deps': [[], 'Allow listed system dependencies (format: (<name>, <version>))', (5, 'dependencies')], 'osdependencies': [[], 'OS dependencies that should be present on the system', (5, 'dependencies')], 'buildstats': [None, 'A list of dicts with build statistics', (9, 'other')], 'homepage': ['http://http://foldx.crg.es/', 'The homepage of the software', (0, 'mandatory')], 'premakeopts': ['', 'Extra options pre-passed to build command.', (3, 'build')], 'license_file': [None, 'License file for software', (6, 'license')], 'tests': [[], 'List of test-scripts to run after install. A test script should return a non-zero exit status to fail', (3, 'build')], 'license_server': [None, 'License server for software', (6, 'license')], 'description': ['FoldX is used to provide a fast and quantitative estimation of the importance of the interactions\n contributing to the stability of proteins and protein complexes.', 'A short description of the software', (0, 'mandatory')], 'modextrapaths': [{}, 'Extra paths to be prepended in module file', (8, 'modules')], 'exts_list': [[], 'List with extensions added to the base installation', (7, 'extensions')], 'docurls': [None, 'List of urls with documentation of the software (not necessarily on homepage)', (0, 'mandatory')], 'stop': [None, 'Keyword to halt the build process after a certain step.', (3, 'build')], 'source_urls': [[], 'List of URLs for source files', (3, 'build')], 'exts_classmap': [{}, 'Map of extension name to class for handling build and installation.', (7, 'extensions')], 'moduleforceunload': [False, 'Force unload of all modules when loading the extension', (8, 'modules')], 'dependencies': [[], 'List of dependencies', (5, 'dependencies')], 'moduleclass': ['bio', 'Module class to be used for this software', (8, 'modules')], 'key': [None, 'Key for installing software', (6, 'license')], 'toolchain': [{'version': 'dummy', 'name': 'dummy'}, 'Name and version of toolchain', (0, 'mandatory')], 'parallel': [1, 'Degree of parallelism for e.g. make (default: based on the number of cores, active cpuset and restrictions in ulimit)', (3, 'build')], 'exts_filter': [None, 'Extension filter details: template for cmd and input to cmd (templates for name, version and src).', (7, 'extensions')], 'versionprefix': ['', 'Additional prefix for software version (placed before version and toolchain name)', (3, 'build')], 'sanity_check_paths': [{'files': ['bin/%(namelower)s64Linux', 'rotabase.txt'], 'dirs': []}, "List of files and directories to check (format: {'files':<list>, 'dirs':<list>})", (3, 'build')], 'installopts': ['', 'Extra options for installation', (3, 'build')], 'onlytcmod': [False, 'Boolean/string to indicate if the toolchain should only load the environment with module (True) or also set all other variables (False) like compiler CC etc (if string: comma separated list of variables that will be ignored).', (2, 'toolchain')], 'unwanted_env_vars': [[], "List of environment variables that shouldn't be set during build", (3, 'build')], 'name': ['FoldX', 'Name of software', (0, 'mandatory')], 'maxparallel': [None, 'Max degree of parallelism', (3, 'build')], 'preconfigopts': ['', 'Extra options pre-passed to configure.', (3, 'build')], 'sanity_check_commands': [[], "format: [(name, options)] e.g. [('gzip','-h')]. Using a non-tuple is equivalent to (name, '-h')", (3, 'build')], 'license_server_port': [None, 'Port for license server', (6, 'license')], 'dontcreateinstalldir': [False, 'Boolean to create (False) or not create (True) the install directory', (4, 'file-management')], 'cleanupoldinstall': [True, 'Boolean to remove (True) or backup (False) the previous install directory with identical name or not.', (4, 'file-management')], 'toolchainopts': [None, 'Extra options for compilers', (2, 'toolchain')], 'software_license': [None, 'Software license', (0, 'mandatory')], 'configopts': ['', 'Extra options passed to configure (default already has --prefix)', (3, 'build')], 'software_license_urls': [None, 'List of software license locations', (0, 'mandatory')]}'
 == 2014-05-18 10:34:18,475 main.easyconfig.templates DEBUG 'version found in easyconfig is 3.0-beta6'
 == 2014-05-18 10:34:18,476 main.easyconfig.templates DEBUG 'version found in easyconfig is 3.0-beta6'
 == 2014-05-18 10:34:18,476 main.easyconfig.templates DEBUG 'version found in easyconfig is 3.0-beta6'
 == 2014-05-18 10:34:18,476 main.easyconfig.templates DEBUG 'name: name, config: FoldX'
 == 2014-05-18 10:34:18,476 main.easyconfig.templates DEBUG 'name: version, config: 3.0-beta6'
 == 2014-05-18 10:34:18,476 main.easyconfig.templates DEBUG 'name: versionsuffix, config: '
 == 2014-05-18 10:34:18,477 main.easyconfig.templates DEBUG 'name: versionprefix, config: '
 == 2014-05-18 10:34:18,477 main.EB_FoldX INFO 'Running method check_readiness_step part of step ready'
 == 2014-05-18 10:34:18,477 main.EnvironmentModulesC DEBUG 'Current MODULEPATH: /user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/modules/all:/etc/modulefiles/vsc'
 == 2014-05-18 10:34:18,477 main.EnvironmentModulesC DEBUG "Adjusted LD_LIBRARY_PATH from '' to ''"
 == 2014-05-18 10:34:18,477 main.EnvironmentModulesC DEBUG "Running module command '/usr/bin/modulecmd python --terse list' from /vscmnt/gent_vulpix/_/user/home/gent/vsc400/vsc40023"
 == 2014-05-18 10:34:18,490 main.EnvironmentModulesC DEBUG "Correcting paths in LD_LIBRARY_PATH from [''] to []"
 == 2014-05-18 10:34:18,490 main.EB_FoldX WARNING "Loaded modules detected: ['cluster/delcatty']"
 == 2014-05-18 10:34:18,491 main.Dummy DEBUG 'add_dependencies: adding toolchain dependencies []'
 == 2014-05-18 10:34:18,491 main.EB_FoldX INFO 'Running method gen_builddir part of step ready'
 == 2014-05-18 10:34:18,491 main.EB_FoldX INFO 'Build dir set to /tmp/vsc40023/easybuild_build/FoldX/3.0-beta6/dummy-dummy'
 == 2014-05-18 10:34:18,491 main.EB_FoldX INFO 'Running method gen_installdir part of step ready'
 == 2014-05-18 10:34:18,492 main.EB_FoldX INFO 'Running method make_builddir part of step ready'
 == 2014-05-18 10:34:18,492 main.EB_FoldX DEBUG 'Creating the build directory /tmp/vsc40023/easybuild_build/FoldX/3.0-beta6/dummy-dummy (cleanup: True)'
 == 2014-05-18 10:34:18,492 main.filetools INFO 'Creating directory /tmp/vsc40023/easybuild_build/FoldX/3.0-beta6/dummy-dummy (parents: True, set_gid: False, sticky: False)'
 == 2014-05-18 10:34:18,499 main.EB_FoldX INFO 'Running method env_reset_changes part of step ready'
 == 2014-05-18 10:34:18,499 main.EB_FoldX INFO 'Running method handle_iterate_opts part of step ready'
 == 2014-05-18 10:34:18,499 main.EB_FoldX INFO 'unpacking...'
 == 2014-05-18 10:34:18,499 main.EB_FoldX INFO 'Starting source step'
 == 2014-05-18 10:34:18,500 main.easyconfig.templates DEBUG 'config: {'preinstallopts': ['', 'Extra prefix options for installation.', (3, 'build')], 'makeopts': ['', 'Extra options passed to make (default already has -j X)', (3, 'build')], 'moduleloadnoconflict': [False, "Don't check for conflicts, unload other versions instead ", (8, 'modules')], 'skip': [False, 'Skip existing software', (3, 'build')], 'cleanupoldbuild': [True, 'Boolean to remove (True) or backup (False) the previous build directory with identical name or not.', (4, 'file-management')], 'runtest': [None, 'Indicates if a test should be run after make; should specify argument after make (for e.g.,"test" for make test)', (3, 'build')], 'sources': [['%(name)s_30b6_linux64.zip'], 'List of source files', (3, 'build')], 'versionsuffix': ['', 'Additional suffix for software version (placed after toolchain name)', (3, 'build')], 'exts_defaultclass': [None, 'List of module for and name of the default extension class', (7, 'extensions')], 'keeppreviousinstall': [False, 'Boolean to keep the previous installation with identical name. Experts only!', (4, 'file-management')], 'checksums': [[], 'Checksums for sources and patches', (3, 'build')], 'skipsteps': [[], 'Skip these steps', (3, 'build')], 'parsed': [True, 'This is a parsed easyconfig', 'HIDDEN'], 'builddependencies': [[], 'List of build dependencies', (5, 'dependencies')], 'modextravars': [{}, 'Extra environment variables to be added to module file', (8, 'modules')], 'unpack_options': [None, 'Extra options for unpacking source', (3, 'build')], 'group': [None, 'Name of the user group for which the software should be available', (6, 'license')], 'patches': [[], 'List of patches to apply', (3, 'build')], 'easyblock': ['ConfigureMake', 'EasyBlock to use for building', (3, 'build')], 'easybuild_version': [None, 'EasyBuild-version this spec-file was written for', (3, 'build')], 'keepsymlinks': [False, 'Boolean to determine whether symlinks are to be kept during copying or if the content of the files pointed to should be copied', (4, 'file-management')], 'start_dir': [None, 'Path to start the make in. If the path is absolute, use that path. If not, this is added to the guessed path.', (4, 'file-management')], 'version': ['3.0-beta6', 'Version of software', (0, 'mandatory')], 'buildininstalldir': [False, 'Boolean to build (True) or not build (False) in the installation directory', (4, 'file-management')], 'allow_system_deps': [[], 'Allow listed system dependencies (format: (<name>, <version>))', (5, 'dependencies')], 'osdependencies': [[], 'OS dependencies that should be present on the system', (5, 'dependencies')], 'buildstats': [None, 'A list of dicts with build statistics', (9, 'other')], 'homepage': ['http://http://foldx.crg.es/', 'The homepage of the software', (0, 'mandatory')], 'premakeopts': ['', 'Extra options pre-passed to build command.', (3, 'build')], 'license_file': [None, 'License file for software', (6, 'license')], 'tests': [[], 'List of test-scripts to run after install. A test script should return a non-zero exit status to fail', (3, 'build')], 'license_server': [None, 'License server for software', (6, 'license')], 'description': ['FoldX is used to provide a fast and quantitative estimation of the importance of the interactions\n contributing to the stability of proteins and protein complexes.', 'A short description of the software', (0, 'mandatory')], 'modextrapaths': [{}, 'Extra paths to be prepended in module file', (8, 'modules')], 'exts_list': [[], 'List with extensions added to the base installation', (7, 'extensions')], 'docurls': [None, 'List of urls with documentation of the software (not necessarily on homepage)', (0, 'mandatory')], 'stop': [None, 'Keyword to halt the build process after a certain step.', (3, 'build')], 'source_urls': [[], 'List of URLs for source files', (3, 'build')], 'exts_classmap': [{}, 'Map of extension name to class for handling build and installation.', (7, 'extensions')], 'moduleforceunload': [False, 'Force unload of all modules when loading the extension', (8, 'modules')], 'dependencies': [[], 'List of dependencies', (5, 'dependencies')], 'moduleclass': ['bio', 'Module class to be used for this software', (8, 'modules')], 'key': [None, 'Key for installing software', (6, 'license')], 'toolchain': [{'version': 'dummy', 'name': 'dummy'}, 'Name and version of toolchain', (0, 'mandatory')], 'parallel': [1, 'Degree of parallelism for e.g. make (default: based on the number of cores, active cpuset and restrictions in ulimit)', (3, 'build')], 'exts_filter': [None, 'Extension filter details: template for cmd and input to cmd (templates for name, version and src).', (7, 'extensions')], 'versionprefix': ['', 'Additional prefix for software version (placed before version and toolchain name)', (3, 'build')], 'sanity_check_paths': [{'files': ['bin/%(namelower)s64Linux', 'rotabase.txt'], 'dirs': []}, "List of files and directories to check (format: {'files':<list>, 'dirs':<list>})", (3, 'build')], 'installopts': ['', 'Extra options for installation', (3, 'build')], 'onlytcmod': [False, 'Boolean/string to indicate if the toolchain should only load the environment with module (True) or also set all other variables (False) like compiler CC etc (if string: comma separated list of variables that will be ignored).', (2, 'toolchain')], 'unwanted_env_vars': [[], "List of environment variables that shouldn't be set during build", (3, 'build')], 'name': ['FoldX', 'Name of software', (0, 'mandatory')], 'maxparallel': [None, 'Max degree of parallelism', (3, 'build')], 'preconfigopts': ['', 'Extra options pre-passed to configure.', (3, 'build')], 'sanity_check_commands': [[], "format: [(name, options)] e.g. [('gzip','-h')]. Using a non-tuple is equivalent to (name, '-h')", (3, 'build')], 'license_server_port': [None, 'Port for license server', (6, 'license')], 'dontcreateinstalldir': [False, 'Boolean to create (False) or not create (True) the install directory', (4, 'file-management')], 'cleanupoldinstall': [True, 'Boolean to remove (True) or backup (False) the previous install directory with identical name or not.', (4, 'file-management')], 'toolchainopts': [None, 'Extra options for compilers', (2, 'toolchain')], 'software_license': [None, 'Software license', (0, 'mandatory')], 'configopts': ['', 'Extra options passed to configure (default already has --prefix)', (3, 'build')], 'software_license_urls': [None, 'List of software license locations', (0, 'mandatory')]}'
 == 2014-05-18 10:34:18,501 main.easyconfig.templates DEBUG 'version found in easyconfig is 3.0-beta6'
 == 2014-05-18 10:34:18,502 main.easyconfig.templates DEBUG 'version found in easyconfig is 3.0-beta6'
 == 2014-05-18 10:34:18,502 main.easyconfig.templates DEBUG 'version found in easyconfig is 3.0-beta6'
 == 2014-05-18 10:34:18,502 main.easyconfig.templates DEBUG 'name: name, config: FoldX'
 == 2014-05-18 10:34:18,502 main.easyconfig.templates DEBUG 'name: version, config: 3.0-beta6'
 == 2014-05-18 10:34:18,502 main.easyconfig.templates DEBUG 'name: versionsuffix, config: '
 == 2014-05-18 10:34:18,502 main.easyconfig.templates DEBUG 'name: versionprefix, config: '
 == 2014-05-18 10:34:18,503 main.easyconfig.templates DEBUG 'config: {'preinstallopts': ['', 'Extra prefix options for installation.', (3, 'build')], 'makeopts': ['', 'Extra options passed to make (default already has -j X)', (3, 'build')], 'moduleloadnoconflict': [False, "Don't check for conflicts, unload other versions instead ", (8, 'modules')], 'skip': [False, 'Skip existing software', (3, 'build')], 'cleanupoldbuild': [True, 'Boolean to remove (True) or backup (False) the previous build directory with identical name or not.', (4, 'file-management')], 'runtest': [None, 'Indicates if a test should be run after make; should specify argument after make (for e.g.,"test" for make test)', (3, 'build')], 'sources': [['%(name)s_30b6_linux64.zip'], 'List of source files', (3, 'build')], 'versionsuffix': ['', 'Additional suffix for software version (placed after toolchain name)', (3, 'build')], 'exts_defaultclass': [None, 'List of module for and name of the default extension class', (7, 'extensions')], 'keeppreviousinstall': [False, 'Boolean to keep the previous installation with identical name. Experts only!', (4, 'file-management')], 'checksums': [[], 'Checksums for sources and patches', (3, 'build')], 'skipsteps': [[], 'Skip these steps', (3, 'build')], 'parsed': [True, 'This is a parsed easyconfig', 'HIDDEN'], 'builddependencies': [[], 'List of build dependencies', (5, 'dependencies')], 'modextravars': [{}, 'Extra environment variables to be added to module file', (8, 'modules')], 'unpack_options': [None, 'Extra options for unpacking source', (3, 'build')], 'group': [None, 'Name of the user group for which the software should be available', (6, 'license')], 'patches': [[], 'List of patches to apply', (3, 'build')], 'easyblock': ['ConfigureMake', 'EasyBlock to use for building', (3, 'build')], 'easybuild_version': [None, 'EasyBuild-version this spec-file was written for', (3, 'build')], 'keepsymlinks': [False, 'Boolean to determine whether symlinks are to be kept during copying or if the content of the files pointed to should be copied', (4, 'file-management')], 'start_dir': [None, 'Path to start the make in. If the path is absolute, use that path. If not, this is added to the guessed path.', (4, 'file-management')], 'version': ['3.0-beta6', 'Version of software', (0, 'mandatory')], 'buildininstalldir': [False, 'Boolean to build (True) or not build (False) in the installation directory', (4, 'file-management')], 'allow_system_deps': [[], 'Allow listed system dependencies (format: (<name>, <version>))', (5, 'dependencies')], 'osdependencies': [[], 'OS dependencies that should be present on the system', (5, 'dependencies')], 'buildstats': [None, 'A list of dicts with build statistics', (9, 'other')], 'homepage': ['http://http://foldx.crg.es/', 'The homepage of the software', (0, 'mandatory')], 'premakeopts': ['', 'Extra options pre-passed to build command.', (3, 'build')], 'license_file': [None, 'License file for software', (6, 'license')], 'tests': [[], 'List of test-scripts to run after install. A test script should return a non-zero exit status to fail', (3, 'build')], 'license_server': [None, 'License server for software', (6, 'license')], 'description': ['FoldX is used to provide a fast and quantitative estimation of the importance of the interactions\n contributing to the stability of proteins and protein complexes.', 'A short description of the software', (0, 'mandatory')], 'modextrapaths': [{}, 'Extra paths to be prepended in module file', (8, 'modules')], 'exts_list': [[], 'List with extensions added to the base installation', (7, 'extensions')], 'docurls': [None, 'List of urls with documentation of the software (not necessarily on homepage)', (0, 'mandatory')], 'stop': [None, 'Keyword to halt the build process after a certain step.', (3, 'build')], 'source_urls': [[], 'List of URLs for source files', (3, 'build')], 'exts_classmap': [{}, 'Map of extension name to class for handling build and installation.', (7, 'extensions')], 'moduleforceunload': [False, 'Force unload of all modules when loading the extension', (8, 'modules')], 'dependencies': [[], 'List of dependencies', (5, 'dependencies')], 'moduleclass': ['bio', 'Module class to be used for this software', (8, 'modules')], 'key': [None, 'Key for installing software', (6, 'license')], 'toolchain': [{'version': 'dummy', 'name': 'dummy'}, 'Name and version of toolchain', (0, 'mandatory')], 'parallel': [1, 'Degree of parallelism for e.g. make (default: based on the number of cores, active cpuset and restrictions in ulimit)', (3, 'build')], 'exts_filter': [None, 'Extension filter details: template for cmd and input to cmd (templates for name, version and src).', (7, 'extensions')], 'versionprefix': ['', 'Additional prefix for software version (placed before version and toolchain name)', (3, 'build')], 'sanity_check_paths': [{'files': ['bin/%(namelower)s64Linux', 'rotabase.txt'], 'dirs': []}, "List of files and directories to check (format: {'files':<list>, 'dirs':<list>})", (3, 'build')], 'installopts': ['', 'Extra options for installation', (3, 'build')], 'onlytcmod': [False, 'Boolean/string to indicate if the toolchain should only load the environment with module (True) or also set all other variables (False) like compiler CC etc (if string: comma separated list of variables that will be ignored).', (2, 'toolchain')], 'unwanted_env_vars': [[], "List of environment variables that shouldn't be set during build", (3, 'build')], 'name': ['FoldX', 'Name of software', (0, 'mandatory')], 'maxparallel': [None, 'Max degree of parallelism', (3, 'build')], 'preconfigopts': ['', 'Extra options pre-passed to configure.', (3, 'build')], 'sanity_check_commands': [[], "format: [(name, options)] e.g. [('gzip','-h')]. Using a non-tuple is equivalent to (name, '-h')", (3, 'build')], 'license_server_port': [None, 'Port for license server', (6, 'license')], 'dontcreateinstalldir': [False, 'Boolean to create (False) or not create (True) the install directory', (4, 'file-management')], 'cleanupoldinstall': [True, 'Boolean to remove (True) or backup (False) the previous install directory with identical name or not.', (4, 'file-management')], 'toolchainopts': [None, 'Extra options for compilers', (2, 'toolchain')], 'software_license': [None, 'Software license', (0, 'mandatory')], 'configopts': ['', 'Extra options passed to configure (default already has --prefix)', (3, 'build')], 'software_license_urls': [None, 'List of software license locations', (0, 'mandatory')]}'
 == 2014-05-18 10:34:18,504 main.easyconfig.templates DEBUG 'version found in easyconfig is 3.0-beta6'
 == 2014-05-18 10:34:18,505 main.easyconfig.templates DEBUG 'version found in easyconfig is 3.0-beta6'
 == 2014-05-18 10:34:18,505 main.easyconfig.templates DEBUG 'version found in easyconfig is 3.0-beta6'
 == 2014-05-18 10:34:18,505 main.easyconfig.templates DEBUG 'name: name, config: FoldX'
 == 2014-05-18 10:34:18,505 main.easyconfig.templates DEBUG 'name: version, config: 3.0-beta6'
 == 2014-05-18 10:34:18,506 main.easyconfig.templates DEBUG 'name: versionsuffix, config: '
 == 2014-05-18 10:34:18,506 main.easyconfig.templates DEBUG 'name: versionprefix, config: '
 == 2014-05-18 10:34:18,506 main.EB_FoldX INFO 'Running method checksum_step part of step source'
 == 2014-05-18 10:34:18,506 main.EB_FoldX INFO 'Checksum verification for /apps/gent/source/f/FoldX/FoldX_30b6_linux64.zip using None passed.'
 == 2014-05-18 10:34:18,506 main.EB_FoldX INFO 'Running method extract_step part of step source'
 == 2014-05-18 10:34:18,507 main.EB_FoldX INFO 'Unpacking source FoldX_30b6_linux64.zip'
 == 2014-05-18 10:34:18,507 main.filetools DEBUG 'Not creating existing path /tmp/vsc40023/easybuild_build/FoldX/3.0-beta6/dummy-dummy'
 == 2014-05-18 10:34:18,507 main.filetools DEBUG 'Unpacking /apps/gent/source/f/FoldX/FoldX_30b6_linux64.zip in directory /tmp/vsc40023/easybuild_build/FoldX/3.0-beta6/dummy-dummy.'
 == 2014-05-18 10:34:18,507 main.run DEBUG 'run_cmd: running cmd unzip -qq /apps/gent/source/f/FoldX/FoldX_30b6_linux64.zip (in /tmp/vsc40023/easybuild_build/FoldX/3.0-beta6/dummy-dummy)'
 == 2014-05-18 10:34:18,584 main.run DEBUG 'cmd "unzip -qq /apps/gent/source/f/FoldX/FoldX_30b6_linux64.zip" exited with exitcode 0 and output:\n'
 == 2014-05-18 10:34:18,585 main.run DEBUG 'Using default regular expression: (?<![(,-]|\\w)(?:error|segmentation fault|failed)(?![(,-]|\\.?\\w)'
 == 2014-05-18 10:34:18,585 main.filetools DEBUG "Last dir list ['foldx64Linux', 'rotabase.txt']"
 == 2014-05-18 10:34:18,585 main.filetools DEBUG 'Possible new dir /tmp/vsc40023/easybuild_build/FoldX/3.0-beta6/dummy-dummy/FoldX_30b6_linux64 found'
 == 2014-05-18 10:34:18,586 main.EB_FoldX INFO 'patching...'
 == 2014-05-18 10:34:18,586 main.EB_FoldX INFO 'Starting patch step'
 == 2014-05-18 10:34:18,587 main.easyconfig.templates DEBUG 'config: {'preinstallopts': ['', 'Extra prefix options for installation.', (3, 'build')], 'makeopts': ['', 'Extra options passed to make (default already has -j X)', (3, 'build')], 'moduleloadnoconflict': [False, "Don't check for conflicts, unload other versions instead ", (8, 'modules')], 'skip': [False, 'Skip existing software', (3, 'build')], 'cleanupoldbuild': [True, 'Boolean to remove (True) or backup (False) the previous build directory with identical name or not.', (4, 'file-management')], 'runtest': [None, 'Indicates if a test should be run after make; should specify argument after make (for e.g.,"test" for make test)', (3, 'build')], 'sources': [['%(name)s_30b6_linux64.zip'], 'List of source files', (3, 'build')], 'versionsuffix': ['', 'Additional suffix for software version (placed after toolchain name)', (3, 'build')], 'exts_defaultclass': [None, 'List of module for and name of the default extension class', (7, 'extensions')], 'keeppreviousinstall': [False, 'Boolean to keep the previous installation with identical name. Experts only!', (4, 'file-management')], 'checksums': [[], 'Checksums for sources and patches', (3, 'build')], 'skipsteps': [[], 'Skip these steps', (3, 'build')], 'parsed': [True, 'This is a parsed easyconfig', 'HIDDEN'], 'builddependencies': [[], 'List of build dependencies', (5, 'dependencies')], 'modextravars': [{}, 'Extra environment variables to be added to module file', (8, 'modules')], 'unpack_options': [None, 'Extra options for unpacking source', (3, 'build')], 'group': [None, 'Name of the user group for which the software should be available', (6, 'license')], 'patches': [[], 'List of patches to apply', (3, 'build')], 'easyblock': ['ConfigureMake', 'EasyBlock to use for building', (3, 'build')], 'easybuild_version': [None, 'EasyBuild-version this spec-file was written for', (3, 'build')], 'keepsymlinks': [False, 'Boolean to determine whether symlinks are to be kept during copying or if the content of the files pointed to should be copied', (4, 'file-management')], 'start_dir': [None, 'Path to start the make in. If the path is absolute, use that path. If not, this is added to the guessed path.', (4, 'file-management')], 'version': ['3.0-beta6', 'Version of software', (0, 'mandatory')], 'buildininstalldir': [False, 'Boolean to build (True) or not build (False) in the installation directory', (4, 'file-management')], 'allow_system_deps': [[], 'Allow listed system dependencies (format: (<name>, <version>))', (5, 'dependencies')], 'osdependencies': [[], 'OS dependencies that should be present on the system', (5, 'dependencies')], 'buildstats': [None, 'A list of dicts with build statistics', (9, 'other')], 'homepage': ['http://http://foldx.crg.es/', 'The homepage of the software', (0, 'mandatory')], 'premakeopts': ['', 'Extra options pre-passed to build command.', (3, 'build')], 'license_file': [None, 'License file for software', (6, 'license')], 'tests': [[], 'List of test-scripts to run after install. A test script should return a non-zero exit status to fail', (3, 'build')], 'license_server': [None, 'License server for software', (6, 'license')], 'description': ['FoldX is used to provide a fast and quantitative estimation of the importance of the interactions\n contributing to the stability of proteins and protein complexes.', 'A short description of the software', (0, 'mandatory')], 'modextrapaths': [{}, 'Extra paths to be prepended in module file', (8, 'modules')], 'exts_list': [[], 'List with extensions added to the base installation', (7, 'extensions')], 'docurls': [None, 'List of urls with documentation of the software (not necessarily on homepage)', (0, 'mandatory')], 'stop': [None, 'Keyword to halt the build process after a certain step.', (3, 'build')], 'source_urls': [[], 'List of URLs for source files', (3, 'build')], 'exts_classmap': [{}, 'Map of extension name to class for handling build and installation.', (7, 'extensions')], 'moduleforceunload': [False, 'Force unload of all modules when loading the extension', (8, 'modules')], 'dependencies': [[], 'List of dependencies', (5, 'dependencies')], 'moduleclass': ['bio', 'Module class to be used for this software', (8, 'modules')], 'key': [None, 'Key for installing software', (6, 'license')], 'toolchain': [{'version': 'dummy', 'name': 'dummy'}, 'Name and version of toolchain', (0, 'mandatory')], 'parallel': [1, 'Degree of parallelism for e.g. make (default: based on the number of cores, active cpuset and restrictions in ulimit)', (3, 'build')], 'exts_filter': [None, 'Extension filter details: template for cmd and input to cmd (templates for name, version and src).', (7, 'extensions')], 'versionprefix': ['', 'Additional prefix for software version (placed before version and toolchain name)', (3, 'build')], 'sanity_check_paths': [{'files': ['bin/%(namelower)s64Linux', 'rotabase.txt'], 'dirs': []}, "List of files and directories to check (format: {'files':<list>, 'dirs':<list>})", (3, 'build')], 'installopts': ['', 'Extra options for installation', (3, 'build')], 'onlytcmod': [False, 'Boolean/string to indicate if the toolchain should only load the environment with module (True) or also set all other variables (False) like compiler CC etc (if string: comma separated list of variables that will be ignored).', (2, 'toolchain')], 'unwanted_env_vars': [[], "List of environment variables that shouldn't be set during build", (3, 'build')], 'name': ['FoldX', 'Name of software', (0, 'mandatory')], 'maxparallel': [None, 'Max degree of parallelism', (3, 'build')], 'preconfigopts': ['', 'Extra options pre-passed to configure.', (3, 'build')], 'sanity_check_commands': [[], "format: [(name, options)] e.g. [('gzip','-h')]. Using a non-tuple is equivalent to (name, '-h')", (3, 'build')], 'license_server_port': [None, 'Port for license server', (6, 'license')], 'dontcreateinstalldir': [False, 'Boolean to create (False) or not create (True) the install directory', (4, 'file-management')], 'cleanupoldinstall': [True, 'Boolean to remove (True) or backup (False) the previous install directory with identical name or not.', (4, 'file-management')], 'toolchainopts': [None, 'Extra options for compilers', (2, 'toolchain')], 'software_license': [None, 'Software license', (0, 'mandatory')], 'configopts': ['', 'Extra options passed to configure (default already has --prefix)', (3, 'build')], 'software_license_urls': [None, 'List of software license locations', (0, 'mandatory')]}'
 == 2014-05-18 10:34:18,588 main.easyconfig.templates DEBUG 'version found in easyconfig is 3.0-beta6'
 == 2014-05-18 10:34:18,588 main.easyconfig.templates DEBUG 'version found in easyconfig is 3.0-beta6'
 == 2014-05-18 10:34:18,588 main.easyconfig.templates DEBUG 'version found in easyconfig is 3.0-beta6'
 == 2014-05-18 10:34:18,589 main.easyconfig.templates DEBUG 'name: name, config: FoldX'
 == 2014-05-18 10:34:18,589 main.easyconfig.templates DEBUG 'name: version, config: 3.0-beta6'
 == 2014-05-18 10:34:18,589 main.easyconfig.templates DEBUG 'name: versionsuffix, config: '
 == 2014-05-18 10:34:18,589 main.easyconfig.templates DEBUG 'name: versionprefix, config: '
 == 2014-05-18 10:34:18,590 main.easyconfig.templates DEBUG 'config: {'preinstallopts': ['', 'Extra prefix options for installation.', (3, 'build')], 'makeopts': ['', 'Extra options passed to make (default already has -j X)', (3, 'build')], 'moduleloadnoconflict': [False, "Don't check for conflicts, unload other versions instead ", (8, 'modules')], 'skip': [False, 'Skip existing software', (3, 'build')], 'cleanupoldbuild': [True, 'Boolean to remove (True) or backup (False) the previous build directory with identical name or not.', (4, 'file-management')], 'runtest': [None, 'Indicates if a test should be run after make; should specify argument after make (for e.g.,"test" for make test)', (3, 'build')], 'sources': [['%(name)s_30b6_linux64.zip'], 'List of source files', (3, 'build')], 'versionsuffix': ['', 'Additional suffix for software version (placed after toolchain name)', (3, 'build')], 'exts_defaultclass': [None, 'List of module for and name of the default extension class', (7, 'extensions')], 'keeppreviousinstall': [False, 'Boolean to keep the previous installation with identical name. Experts only!', (4, 'file-management')], 'checksums': [[], 'Checksums for sources and patches', (3, 'build')], 'skipsteps': [[], 'Skip these steps', (3, 'build')], 'parsed': [True, 'This is a parsed easyconfig', 'HIDDEN'], 'builddependencies': [[], 'List of build dependencies', (5, 'dependencies')], 'modextravars': [{}, 'Extra environment variables to be added to module file', (8, 'modules')], 'unpack_options': [None, 'Extra options for unpacking source', (3, 'build')], 'group': [None, 'Name of the user group for which the software should be available', (6, 'license')], 'patches': [[], 'List of patches to apply', (3, 'build')], 'easyblock': ['ConfigureMake', 'EasyBlock to use for building', (3, 'build')], 'easybuild_version': [None, 'EasyBuild-version this spec-file was written for', (3, 'build')], 'keepsymlinks': [False, 'Boolean to determine whether symlinks are to be kept during copying or if the content of the files pointed to should be copied', (4, 'file-management')], 'start_dir': [None, 'Path to start the make in. If the path is absolute, use that path. If not, this is added to the guessed path.', (4, 'file-management')], 'version': ['3.0-beta6', 'Version of software', (0, 'mandatory')], 'buildininstalldir': [False, 'Boolean to build (True) or not build (False) in the installation directory', (4, 'file-management')], 'allow_system_deps': [[], 'Allow listed system dependencies (format: (<name>, <version>))', (5, 'dependencies')], 'osdependencies': [[], 'OS dependencies that should be present on the system', (5, 'dependencies')], 'buildstats': [None, 'A list of dicts with build statistics', (9, 'other')], 'homepage': ['http://http://foldx.crg.es/', 'The homepage of the software', (0, 'mandatory')], 'premakeopts': ['', 'Extra options pre-passed to build command.', (3, 'build')], 'license_file': [None, 'License file for software', (6, 'license')], 'tests': [[], 'List of test-scripts to run after install. A test script should return a non-zero exit status to fail', (3, 'build')], 'license_server': [None, 'License server for software', (6, 'license')], 'description': ['FoldX is used to provide a fast and quantitative estimation of the importance of the interactions\n contributing to the stability of proteins and protein complexes.', 'A short description of the software', (0, 'mandatory')], 'modextrapaths': [{}, 'Extra paths to be prepended in module file', (8, 'modules')], 'exts_list': [[], 'List with extensions added to the base installation', (7, 'extensions')], 'docurls': [None, 'List of urls with documentation of the software (not necessarily on homepage)', (0, 'mandatory')], 'stop': [None, 'Keyword to halt the build process after a certain step.', (3, 'build')], 'source_urls': [[], 'List of URLs for source files', (3, 'build')], 'exts_classmap': [{}, 'Map of extension name to class for handling build and installation.', (7, 'extensions')], 'moduleforceunload': [False, 'Force unload of all modules when loading the extension', (8, 'modules')], 'dependencies': [[], 'List of dependencies', (5, 'dependencies')], 'moduleclass': ['bio', 'Module class to be used for this software', (8, 'modules')], 'key': [None, 'Key for installing software', (6, 'license')], 'toolchain': [{'version': 'dummy', 'name': 'dummy'}, 'Name and version of toolchain', (0, 'mandatory')], 'parallel': [1, 'Degree of parallelism for e.g. make (default: based on the number of cores, active cpuset and restrictions in ulimit)', (3, 'build')], 'exts_filter': [None, 'Extension filter details: template for cmd and input to cmd (templates for name, version and src).', (7, 'extensions')], 'versionprefix': ['', 'Additional prefix for software version (placed before version and toolchain name)', (3, 'build')], 'sanity_check_paths': [{'files': ['bin/%(namelower)s64Linux', 'rotabase.txt'], 'dirs': []}, "List of files and directories to check (format: {'files':<list>, 'dirs':<list>})", (3, 'build')], 'installopts': ['', 'Extra options for installation', (3, 'build')], 'onlytcmod': [False, 'Boolean/string to indicate if the toolchain should only load the environment with module (True) or also set all other variables (False) like compiler CC etc (if string: comma separated list of variables that will be ignored).', (2, 'toolchain')], 'unwanted_env_vars': [[], "List of environment variables that shouldn't be set during build", (3, 'build')], 'name': ['FoldX', 'Name of software', (0, 'mandatory')], 'maxparallel': [None, 'Max degree of parallelism', (3, 'build')], 'preconfigopts': ['', 'Extra options pre-passed to configure.', (3, 'build')], 'sanity_check_commands': [[], "format: [(name, options)] e.g. [('gzip','-h')]. Using a non-tuple is equivalent to (name, '-h')", (3, 'build')], 'license_server_port': [None, 'Port for license server', (6, 'license')], 'dontcreateinstalldir': [False, 'Boolean to create (False) or not create (True) the install directory', (4, 'file-management')], 'cleanupoldinstall': [True, 'Boolean to remove (True) or backup (False) the previous install directory with identical name or not.', (4, 'file-management')], 'toolchainopts': [None, 'Extra options for compilers', (2, 'toolchain')], 'software_license': [None, 'Software license', (0, 'mandatory')], 'configopts': ['', 'Extra options passed to configure (default already has --prefix)', (3, 'build')], 'software_license_urls': [None, 'List of software license locations', (0, 'mandatory')]}'
 == 2014-05-18 10:34:18,591 main.easyconfig.templates DEBUG 'version found in easyconfig is 3.0-beta6'
 == 2014-05-18 10:34:18,591 main.easyconfig.templates DEBUG 'version found in easyconfig is 3.0-beta6'
 == 2014-05-18 10:34:18,591 main.easyconfig.templates DEBUG 'version found in easyconfig is 3.0-beta6'
 == 2014-05-18 10:34:18,592 main.easyconfig.templates DEBUG 'name: name, config: FoldX'
 == 2014-05-18 10:34:18,592 main.easyconfig.templates DEBUG 'name: version, config: 3.0-beta6'
 == 2014-05-18 10:34:18,592 main.easyconfig.templates DEBUG 'name: versionsuffix, config: '
 == 2014-05-18 10:34:18,592 main.easyconfig.templates DEBUG 'name: versionprefix, config: '
 == 2014-05-18 10:34:18,592 main.EB_FoldX INFO 'Running method patch_step part of step patch'
 == 2014-05-18 10:34:18,593 main.EB_FoldX INFO 'preparing...'
 == 2014-05-18 10:34:18,593 main.EB_FoldX INFO 'Starting prepare step'
 == 2014-05-18 10:34:18,593 main.easyconfig.templates DEBUG 'config: {'preinstallopts': ['', 'Extra prefix options for installation.', (3, 'build')], 'makeopts': ['', 'Extra options passed to make (default already has -j X)', (3, 'build')], 'moduleloadnoconflict': [False, "Don't check for conflicts, unload other versions instead ", (8, 'modules')], 'skip': [False, 'Skip existing software', (3, 'build')], 'cleanupoldbuild': [True, 'Boolean to remove (True) or backup (False) the previous build directory with identical name or not.', (4, 'file-management')], 'runtest': [None, 'Indicates if a test should be run after make; should specify argument after make (for e.g.,"test" for make test)', (3, 'build')], 'sources': [['%(name)s_30b6_linux64.zip'], 'List of source files', (3, 'build')], 'versionsuffix': ['', 'Additional suffix for software version (placed after toolchain name)', (3, 'build')], 'exts_defaultclass': [None, 'List of module for and name of the default extension class', (7, 'extensions')], 'keeppreviousinstall': [False, 'Boolean to keep the previous installation with identical name. Experts only!', (4, 'file-management')], 'checksums': [[], 'Checksums for sources and patches', (3, 'build')], 'skipsteps': [[], 'Skip these steps', (3, 'build')], 'parsed': [True, 'This is a parsed easyconfig', 'HIDDEN'], 'builddependencies': [[], 'List of build dependencies', (5, 'dependencies')], 'modextravars': [{}, 'Extra environment variables to be added to module file', (8, 'modules')], 'unpack_options': [None, 'Extra options for unpacking source', (3, 'build')], 'group': [None, 'Name of the user group for which the software should be available', (6, 'license')], 'patches': [[], 'List of patches to apply', (3, 'build')], 'easyblock': ['ConfigureMake', 'EasyBlock to use for building', (3, 'build')], 'easybuild_version': [None, 'EasyBuild-version this spec-file was written for', (3, 'build')], 'keepsymlinks': [False, 'Boolean to determine whether symlinks are to be kept during copying or if the content of the files pointed to should be copied', (4, 'file-management')], 'start_dir': [None, 'Path to start the make in. If the path is absolute, use that path. If not, this is added to the guessed path.', (4, 'file-management')], 'version': ['3.0-beta6', 'Version of software', (0, 'mandatory')], 'buildininstalldir': [False, 'Boolean to build (True) or not build (False) in the installation directory', (4, 'file-management')], 'allow_system_deps': [[], 'Allow listed system dependencies (format: (<name>, <version>))', (5, 'dependencies')], 'osdependencies': [[], 'OS dependencies that should be present on the system', (5, 'dependencies')], 'buildstats': [None, 'A list of dicts with build statistics', (9, 'other')], 'homepage': ['http://http://foldx.crg.es/', 'The homepage of the software', (0, 'mandatory')], 'premakeopts': ['', 'Extra options pre-passed to build command.', (3, 'build')], 'license_file': [None, 'License file for software', (6, 'license')], 'tests': [[], 'List of test-scripts to run after install. A test script should return a non-zero exit status to fail', (3, 'build')], 'license_server': [None, 'License server for software', (6, 'license')], 'description': ['FoldX is used to provide a fast and quantitative estimation of the importance of the interactions\n contributing to the stability of proteins and protein complexes.', 'A short description of the software', (0, 'mandatory')], 'modextrapaths': [{}, 'Extra paths to be prepended in module file', (8, 'modules')], 'exts_list': [[], 'List with extensions added to the base installation', (7, 'extensions')], 'docurls': [None, 'List of urls with documentation of the software (not necessarily on homepage)', (0, 'mandatory')], 'stop': [None, 'Keyword to halt the build process after a certain step.', (3, 'build')], 'source_urls': [[], 'List of URLs for source files', (3, 'build')], 'exts_classmap': [{}, 'Map of extension name to class for handling build and installation.', (7, 'extensions')], 'moduleforceunload': [False, 'Force unload of all modules when loading the extension', (8, 'modules')], 'dependencies': [[], 'List of dependencies', (5, 'dependencies')], 'moduleclass': ['bio', 'Module class to be used for this software', (8, 'modules')], 'key': [None, 'Key for installing software', (6, 'license')], 'toolchain': [{'version': 'dummy', 'name': 'dummy'}, 'Name and version of toolchain', (0, 'mandatory')], 'parallel': [1, 'Degree of parallelism for e.g. make (default: based on the number of cores, active cpuset and restrictions in ulimit)', (3, 'build')], 'exts_filter': [None, 'Extension filter details: template for cmd and input to cmd (templates for name, version and src).', (7, 'extensions')], 'versionprefix': ['', 'Additional prefix for software version (placed before version and toolchain name)', (3, 'build')], 'sanity_check_paths': [{'files': ['bin/%(namelower)s64Linux', 'rotabase.txt'], 'dirs': []}, "List of files and directories to check (format: {'files':<list>, 'dirs':<list>})", (3, 'build')], 'installopts': ['', 'Extra options for installation', (3, 'build')], 'onlytcmod': [False, 'Boolean/string to indicate if the toolchain should only load the environment with module (True) or also set all other variables (False) like compiler CC etc (if string: comma separated list of variables that will be ignored).', (2, 'toolchain')], 'unwanted_env_vars': [[], "List of environment variables that shouldn't be set during build", (3, 'build')], 'name': ['FoldX', 'Name of software', (0, 'mandatory')], 'maxparallel': [None, 'Max degree of parallelism', (3, 'build')], 'preconfigopts': ['', 'Extra options pre-passed to configure.', (3, 'build')], 'sanity_check_commands': [[], "format: [(name, options)] e.g. [('gzip','-h')]. Using a non-tuple is equivalent to (name, '-h')", (3, 'build')], 'license_server_port': [None, 'Port for license server', (6, 'license')], 'dontcreateinstalldir': [False, 'Boolean to create (False) or not create (True) the install directory', (4, 'file-management')], 'cleanupoldinstall': [True, 'Boolean to remove (True) or backup (False) the previous install directory with identical name or not.', (4, 'file-management')], 'toolchainopts': [None, 'Extra options for compilers', (2, 'toolchain')], 'software_license': [None, 'Software license', (0, 'mandatory')], 'configopts': ['', 'Extra options passed to configure (default already has --prefix)', (3, 'build')], 'software_license_urls': [None, 'List of software license locations', (0, 'mandatory')]}'
 == 2014-05-18 10:34:18,595 main.easyconfig.templates DEBUG 'version found in easyconfig is 3.0-beta6'
 == 2014-05-18 10:34:18,595 main.easyconfig.templates DEBUG 'version found in easyconfig is 3.0-beta6'
 == 2014-05-18 10:34:18,595 main.easyconfig.templates DEBUG 'version found in easyconfig is 3.0-beta6'
 == 2014-05-18 10:34:18,595 main.easyconfig.templates DEBUG 'name: name, config: FoldX'
 == 2014-05-18 10:34:18,595 main.easyconfig.templates DEBUG 'name: version, config: 3.0-beta6'
 == 2014-05-18 10:34:18,596 main.easyconfig.templates DEBUG 'name: versionsuffix, config: '
 == 2014-05-18 10:34:18,596 main.easyconfig.templates DEBUG 'name: versionprefix, config: '
 == 2014-05-18 10:34:18,596 main.easyconfig.templates DEBUG 'config: {'preinstallopts': ['', 'Extra prefix options for installation.', (3, 'build')], 'makeopts': ['', 'Extra options passed to make (default already has -j X)', (3, 'build')], 'moduleloadnoconflict': [False, "Don't check for conflicts, unload other versions instead ", (8, 'modules')], 'skip': [False, 'Skip existing software', (3, 'build')], 'cleanupoldbuild': [True, 'Boolean to remove (True) or backup (False) the previous build directory with identical name or not.', (4, 'file-management')], 'runtest': [None, 'Indicates if a test should be run after make; should specify argument after make (for e.g.,"test" for make test)', (3, 'build')], 'sources': [['%(name)s_30b6_linux64.zip'], 'List of source files', (3, 'build')], 'versionsuffix': ['', 'Additional suffix for software version (placed after toolchain name)', (3, 'build')], 'exts_defaultclass': [None, 'List of module for and name of the default extension class', (7, 'extensions')], 'keeppreviousinstall': [False, 'Boolean to keep the previous installation with identical name. Experts only!', (4, 'file-management')], 'checksums': [[], 'Checksums for sources and patches', (3, 'build')], 'skipsteps': [[], 'Skip these steps', (3, 'build')], 'parsed': [True, 'This is a parsed easyconfig', 'HIDDEN'], 'builddependencies': [[], 'List of build dependencies', (5, 'dependencies')], 'modextravars': [{}, 'Extra environment variables to be added to module file', (8, 'modules')], 'unpack_options': [None, 'Extra options for unpacking source', (3, 'build')], 'group': [None, 'Name of the user group for which the software should be available', (6, 'license')], 'patches': [[], 'List of patches to apply', (3, 'build')], 'easyblock': ['ConfigureMake', 'EasyBlock to use for building', (3, 'build')], 'easybuild_version': [None, 'EasyBuild-version this spec-file was written for', (3, 'build')], 'keepsymlinks': [False, 'Boolean to determine whether symlinks are to be kept during copying or if the content of the files pointed to should be copied', (4, 'file-management')], 'start_dir': [None, 'Path to start the make in. If the path is absolute, use that path. If not, this is added to the guessed path.', (4, 'file-management')], 'version': ['3.0-beta6', 'Version of software', (0, 'mandatory')], 'buildininstalldir': [False, 'Boolean to build (True) or not build (False) in the installation directory', (4, 'file-management')], 'allow_system_deps': [[], 'Allow listed system dependencies (format: (<name>, <version>))', (5, 'dependencies')], 'osdependencies': [[], 'OS dependencies that should be present on the system', (5, 'dependencies')], 'buildstats': [None, 'A list of dicts with build statistics', (9, 'other')], 'homepage': ['http://http://foldx.crg.es/', 'The homepage of the software', (0, 'mandatory')], 'premakeopts': ['', 'Extra options pre-passed to build command.', (3, 'build')], 'license_file': [None, 'License file for software', (6, 'license')], 'tests': [[], 'List of test-scripts to run after install. A test script should return a non-zero exit status to fail', (3, 'build')], 'license_server': [None, 'License server for software', (6, 'license')], 'description': ['FoldX is used to provide a fast and quantitative estimation of the importance of the interactions\n contributing to the stability of proteins and protein complexes.', 'A short description of the software', (0, 'mandatory')], 'modextrapaths': [{}, 'Extra paths to be prepended in module file', (8, 'modules')], 'exts_list': [[], 'List with extensions added to the base installation', (7, 'extensions')], 'docurls': [None, 'List of urls with documentation of the software (not necessarily on homepage)', (0, 'mandatory')], 'stop': [None, 'Keyword to halt the build process after a certain step.', (3, 'build')], 'source_urls': [[], 'List of URLs for source files', (3, 'build')], 'exts_classmap': [{}, 'Map of extension name to class for handling build and installation.', (7, 'extensions')], 'moduleforceunload': [False, 'Force unload of all modules when loading the extension', (8, 'modules')], 'dependencies': [[], 'List of dependencies', (5, 'dependencies')], 'moduleclass': ['bio', 'Module class to be used for this software', (8, 'modules')], 'key': [None, 'Key for installing software', (6, 'license')], 'toolchain': [{'version': 'dummy', 'name': 'dummy'}, 'Name and version of toolchain', (0, 'mandatory')], 'parallel': [1, 'Degree of parallelism for e.g. make (default: based on the number of cores, active cpuset and restrictions in ulimit)', (3, 'build')], 'exts_filter': [None, 'Extension filter details: template for cmd and input to cmd (templates for name, version and src).', (7, 'extensions')], 'versionprefix': ['', 'Additional prefix for software version (placed before version and toolchain name)', (3, 'build')], 'sanity_check_paths': [{'files': ['bin/%(namelower)s64Linux', 'rotabase.txt'], 'dirs': []}, "List of files and directories to check (format: {'files':<list>, 'dirs':<list>})", (3, 'build')], 'installopts': ['', 'Extra options for installation', (3, 'build')], 'onlytcmod': [False, 'Boolean/string to indicate if the toolchain should only load the environment with module (True) or also set all other variables (False) like compiler CC etc (if string: comma separated list of variables that will be ignored).', (2, 'toolchain')], 'unwanted_env_vars': [[], "List of environment variables that shouldn't be set during build", (3, 'build')], 'name': ['FoldX', 'Name of software', (0, 'mandatory')], 'maxparallel': [None, 'Max degree of parallelism', (3, 'build')], 'preconfigopts': ['', 'Extra options pre-passed to configure.', (3, 'build')], 'sanity_check_commands': [[], "format: [(name, options)] e.g. [('gzip','-h')]. Using a non-tuple is equivalent to (name, '-h')", (3, 'build')], 'license_server_port': [None, 'Port for license server', (6, 'license')], 'dontcreateinstalldir': [False, 'Boolean to create (False) or not create (True) the install directory', (4, 'file-management')], 'cleanupoldinstall': [True, 'Boolean to remove (True) or backup (False) the previous install directory with identical name or not.', (4, 'file-management')], 'toolchainopts': [None, 'Extra options for compilers', (2, 'toolchain')], 'software_license': [None, 'Software license', (0, 'mandatory')], 'configopts': ['', 'Extra options passed to configure (default already has --prefix)', (3, 'build')], 'software_license_urls': [None, 'List of software license locations', (0, 'mandatory')]}'
 == 2014-05-18 10:34:18,598 main.easyconfig.templates DEBUG 'version found in easyconfig is 3.0-beta6'
 == 2014-05-18 10:34:18,598 main.easyconfig.templates DEBUG 'version found in easyconfig is 3.0-beta6'
 == 2014-05-18 10:34:18,598 main.easyconfig.templates DEBUG 'version found in easyconfig is 3.0-beta6'
 == 2014-05-18 10:34:18,598 main.easyconfig.templates DEBUG 'name: name, config: FoldX'
 == 2014-05-18 10:34:18,598 main.easyconfig.templates DEBUG 'name: version, config: 3.0-beta6'
 == 2014-05-18 10:34:18,599 main.easyconfig.templates DEBUG 'name: versionsuffix, config: '
 == 2014-05-18 10:34:18,599 main.easyconfig.templates DEBUG 'name: versionprefix, config: '
 == 2014-05-18 10:34:18,599 main.EB_FoldX INFO 'Running method prepare_step part of step prepare'
 == 2014-05-18 10:34:18,599 main.Dummy DEBUG '_toolchain_exists: dummy toolchain always exists, returning True'
 == 2014-05-18 10:34:18,599 main.Dummy INFO 'prepare: toolchain dummy mode, dummy version; not loading dependencies'
 == 2014-05-18 10:34:18,600 main.EB_FoldX DEBUG 'Changed to real build directory /tmp/vsc40023/easybuild_build/FoldX/3.0-beta6/dummy-dummy/FoldX_30b6_linux64/'
 == 2014-05-18 10:34:18,600 main.EB_FoldX INFO 'configuring...'
 == 2014-05-18 10:34:18,600 main.EB_FoldX INFO 'Starting configure step'
 == 2014-05-18 10:34:18,601 main.easyconfig.templates DEBUG 'config: {'preinstallopts': ['', 'Extra prefix options for installation.', (3, 'build')], 'makeopts': ['', 'Extra options passed to make (default already has -j X)', (3, 'build')], 'moduleloadnoconflict': [False, "Don't check for conflicts, unload other versions instead ", (8, 'modules')], 'skip': [False, 'Skip existing software', (3, 'build')], 'cleanupoldbuild': [True, 'Boolean to remove (True) or backup (False) the previous build directory with identical name or not.', (4, 'file-management')], 'runtest': [None, 'Indicates if a test should be run after make; should specify argument after make (for e.g.,"test" for make test)', (3, 'build')], 'sources': [['%(name)s_30b6_linux64.zip'], 'List of source files', (3, 'build')], 'versionsuffix': ['', 'Additional suffix for software version (placed after toolchain name)', (3, 'build')], 'exts_defaultclass': [None, 'List of module for and name of the default extension class', (7, 'extensions')], 'keeppreviousinstall': [False, 'Boolean to keep the previous installation with identical name. Experts only!', (4, 'file-management')], 'checksums': [[], 'Checksums for sources and patches', (3, 'build')], 'skipsteps': [[], 'Skip these steps', (3, 'build')], 'parsed': [True, 'This is a parsed easyconfig', 'HIDDEN'], 'builddependencies': [[], 'List of build dependencies', (5, 'dependencies')], 'modextravars': [{}, 'Extra environment variables to be added to module file', (8, 'modules')], 'unpack_options': [None, 'Extra options for unpacking source', (3, 'build')], 'group': [None, 'Name of the user group for which the software should be available', (6, 'license')], 'patches': [[], 'List of patches to apply', (3, 'build')], 'easyblock': ['ConfigureMake', 'EasyBlock to use for building', (3, 'build')], 'easybuild_version': [None, 'EasyBuild-version this spec-file was written for', (3, 'build')], 'keepsymlinks': [False, 'Boolean to determine whether symlinks are to be kept during copying or if the content of the files pointed to should be copied', (4, 'file-management')], 'start_dir': ['/tmp/vsc40023/easybuild_build/FoldX/3.0-beta6/dummy-dummy/FoldX_30b6_linux64/', 'Path to start the make in. If the path is absolute, use that path. If not, this is added to the guessed path.', (4, 'file-management')], 'version': ['3.0-beta6', 'Version of software', (0, 'mandatory')], 'buildininstalldir': [False, 'Boolean to build (True) or not build (False) in the installation directory', (4, 'file-management')], 'allow_system_deps': [[], 'Allow listed system dependencies (format: (<name>, <version>))', (5, 'dependencies')], 'osdependencies': [[], 'OS dependencies that should be present on the system', (5, 'dependencies')], 'buildstats': [None, 'A list of dicts with build statistics', (9, 'other')], 'homepage': ['http://http://foldx.crg.es/', 'The homepage of the software', (0, 'mandatory')], 'premakeopts': ['', 'Extra options pre-passed to build command.', (3, 'build')], 'license_file': [None, 'License file for software', (6, 'license')], 'tests': [[], 'List of test-scripts to run after install. A test script should return a non-zero exit status to fail', (3, 'build')], 'license_server': [None, 'License server for software', (6, 'license')], 'description': ['FoldX is used to provide a fast and quantitative estimation of the importance of the interactions\n contributing to the stability of proteins and protein complexes.', 'A short description of the software', (0, 'mandatory')], 'modextrapaths': [{}, 'Extra paths to be prepended in module file', (8, 'modules')], 'exts_list': [[], 'List with extensions added to the base installation', (7, 'extensions')], 'docurls': [None, 'List of urls with documentation of the software (not necessarily on homepage)', (0, 'mandatory')], 'stop': [None, 'Keyword to halt the build process after a certain step.', (3, 'build')], 'source_urls': [[], 'List of URLs for source files', (3, 'build')], 'exts_classmap': [{}, 'Map of extension name to class for handling build and installation.', (7, 'extensions')], 'moduleforceunload': [False, 'Force unload of all modules when loading the extension', (8, 'modules')], 'dependencies': [[], 'List of dependencies', (5, 'dependencies')], 'moduleclass': ['bio', 'Module class to be used for this software', (8, 'modules')], 'key': [None, 'Key for installing software', (6, 'license')], 'toolchain': [{'version': 'dummy', 'name': 'dummy'}, 'Name and version of toolchain', (0, 'mandatory')], 'parallel': [1, 'Degree of parallelism for e.g. make (default: based on the number of cores, active cpuset and restrictions in ulimit)', (3, 'build')], 'exts_filter': [None, 'Extension filter details: template for cmd and input to cmd (templates for name, version and src).', (7, 'extensions')], 'versionprefix': ['', 'Additional prefix for software version (placed before version and toolchain name)', (3, 'build')], 'sanity_check_paths': [{'files': ['bin/%(namelower)s64Linux', 'rotabase.txt'], 'dirs': []}, "List of files and directories to check (format: {'files':<list>, 'dirs':<list>})", (3, 'build')], 'installopts': ['', 'Extra options for installation', (3, 'build')], 'onlytcmod': [False, 'Boolean/string to indicate if the toolchain should only load the environment with module (True) or also set all other variables (False) like compiler CC etc (if string: comma separated list of variables that will be ignored).', (2, 'toolchain')], 'unwanted_env_vars': [{}, "List of environment variables that shouldn't be set during build", (3, 'build')], 'name': ['FoldX', 'Name of software', (0, 'mandatory')], 'maxparallel': [None, 'Max degree of parallelism', (3, 'build')], 'preconfigopts': ['', 'Extra options pre-passed to configure.', (3, 'build')], 'sanity_check_commands': [[], "format: [(name, options)] e.g. [('gzip','-h')]. Using a non-tuple is equivalent to (name, '-h')", (3, 'build')], 'license_server_port': [None, 'Port for license server', (6, 'license')], 'dontcreateinstalldir': [False, 'Boolean to create (False) or not create (True) the install directory', (4, 'file-management')], 'cleanupoldinstall': [True, 'Boolean to remove (True) or backup (False) the previous install directory with identical name or not.', (4, 'file-management')], 'toolchainopts': [None, 'Extra options for compilers', (2, 'toolchain')], 'software_license': [None, 'Software license', (0, 'mandatory')], 'configopts': ['', 'Extra options passed to configure (default already has --prefix)', (3, 'build')], 'software_license_urls': [None, 'List of software license locations', (0, 'mandatory')]}'
 == 2014-05-18 10:34:18,602 main.easyconfig.templates DEBUG 'version found in easyconfig is 3.0-beta6'
 == 2014-05-18 10:34:18,602 main.easyconfig.templates DEBUG 'version found in easyconfig is 3.0-beta6'
 == 2014-05-18 10:34:18,602 main.easyconfig.templates DEBUG 'version found in easyconfig is 3.0-beta6'
 == 2014-05-18 10:34:18,602 main.easyconfig.templates DEBUG 'name: name, config: FoldX'
 == 2014-05-18 10:34:18,603 main.easyconfig.templates DEBUG 'name: version, config: 3.0-beta6'
 == 2014-05-18 10:34:18,603 main.easyconfig.templates DEBUG 'name: versionsuffix, config: '
 == 2014-05-18 10:34:18,603 main.easyconfig.templates DEBUG 'name: versionprefix, config: '
 == 2014-05-18 10:34:18,604 main.easyconfig.templates DEBUG 'config: {'preinstallopts': ['', 'Extra prefix options for installation.', (3, 'build')], 'makeopts': ['', 'Extra options passed to make (default already has -j X)', (3, 'build')], 'moduleloadnoconflict': [False, "Don't check for conflicts, unload other versions instead ", (8, 'modules')], 'skip': [False, 'Skip existing software', (3, 'build')], 'cleanupoldbuild': [True, 'Boolean to remove (True) or backup (False) the previous build directory with identical name or not.', (4, 'file-management')], 'runtest': [None, 'Indicates if a test should be run after make; should specify argument after make (for e.g.,"test" for make test)', (3, 'build')], 'sources': [['%(name)s_30b6_linux64.zip'], 'List of source files', (3, 'build')], 'versionsuffix': ['', 'Additional suffix for software version (placed after toolchain name)', (3, 'build')], 'exts_defaultclass': [None, 'List of module for and name of the default extension class', (7, 'extensions')], 'keeppreviousinstall': [False, 'Boolean to keep the previous installation with identical name. Experts only!', (4, 'file-management')], 'checksums': [[], 'Checksums for sources and patches', (3, 'build')], 'skipsteps': [[], 'Skip these steps', (3, 'build')], 'parsed': [True, 'This is a parsed easyconfig', 'HIDDEN'], 'builddependencies': [[], 'List of build dependencies', (5, 'dependencies')], 'modextravars': [{}, 'Extra environment variables to be added to module file', (8, 'modules')], 'unpack_options': [None, 'Extra options for unpacking source', (3, 'build')], 'group': [None, 'Name of the user group for which the software should be available', (6, 'license')], 'patches': [[], 'List of patches to apply', (3, 'build')], 'easyblock': ['ConfigureMake', 'EasyBlock to use for building', (3, 'build')], 'easybuild_version': [None, 'EasyBuild-version this spec-file was written for', (3, 'build')], 'keepsymlinks': [False, 'Boolean to determine whether symlinks are to be kept during copying or if the content of the files pointed to should be copied', (4, 'file-management')], 'start_dir': ['/tmp/vsc40023/easybuild_build/FoldX/3.0-beta6/dummy-dummy/FoldX_30b6_linux64/', 'Path to start the make in. If the path is absolute, use that path. If not, this is added to the guessed path.', (4, 'file-management')], 'version': ['3.0-beta6', 'Version of software', (0, 'mandatory')], 'buildininstalldir': [False, 'Boolean to build (True) or not build (False) in the installation directory', (4, 'file-management')], 'allow_system_deps': [[], 'Allow listed system dependencies (format: (<name>, <version>))', (5, 'dependencies')], 'osdependencies': [[], 'OS dependencies that should be present on the system', (5, 'dependencies')], 'buildstats': [None, 'A list of dicts with build statistics', (9, 'other')], 'homepage': ['http://http://foldx.crg.es/', 'The homepage of the software', (0, 'mandatory')], 'premakeopts': ['', 'Extra options pre-passed to build command.', (3, 'build')], 'license_file': [None, 'License file for software', (6, 'license')], 'tests': [[], 'List of test-scripts to run after install. A test script should return a non-zero exit status to fail', (3, 'build')], 'license_server': [None, 'License server for software', (6, 'license')], 'description': ['FoldX is used to provide a fast and quantitative estimation of the importance of the interactions\n contributing to the stability of proteins and protein complexes.', 'A short description of the software', (0, 'mandatory')], 'modextrapaths': [{}, 'Extra paths to be prepended in module file', (8, 'modules')], 'exts_list': [[], 'List with extensions added to the base installation', (7, 'extensions')], 'docurls': [None, 'List of urls with documentation of the software (not necessarily on homepage)', (0, 'mandatory')], 'stop': [None, 'Keyword to halt the build process after a certain step.', (3, 'build')], 'source_urls': [[], 'List of URLs for source files', (3, 'build')], 'exts_classmap': [{}, 'Map of extension name to class for handling build and installation.', (7, 'extensions')], 'moduleforceunload': [False, 'Force unload of all modules when loading the extension', (8, 'modules')], 'dependencies': [[], 'List of dependencies', (5, 'dependencies')], 'moduleclass': ['bio', 'Module class to be used for this software', (8, 'modules')], 'key': [None, 'Key for installing software', (6, 'license')], 'toolchain': [{'version': 'dummy', 'name': 'dummy'}, 'Name and version of toolchain', (0, 'mandatory')], 'parallel': [1, 'Degree of parallelism for e.g. make (default: based on the number of cores, active cpuset and restrictions in ulimit)', (3, 'build')], 'exts_filter': [None, 'Extension filter details: template for cmd and input to cmd (templates for name, version and src).', (7, 'extensions')], 'versionprefix': ['', 'Additional prefix for software version (placed before version and toolchain name)', (3, 'build')], 'sanity_check_paths': [{'files': ['bin/%(namelower)s64Linux', 'rotabase.txt'], 'dirs': []}, "List of files and directories to check (format: {'files':<list>, 'dirs':<list>})", (3, 'build')], 'installopts': ['', 'Extra options for installation', (3, 'build')], 'onlytcmod': [False, 'Boolean/string to indicate if the toolchain should only load the environment with module (True) or also set all other variables (False) like compiler CC etc (if string: comma separated list of variables that will be ignored).', (2, 'toolchain')], 'unwanted_env_vars': [{}, "List of environment variables that shouldn't be set during build", (3, 'build')], 'name': ['FoldX', 'Name of software', (0, 'mandatory')], 'maxparallel': [None, 'Max degree of parallelism', (3, 'build')], 'preconfigopts': ['', 'Extra options pre-passed to configure.', (3, 'build')], 'sanity_check_commands': [[], "format: [(name, options)] e.g. [('gzip','-h')]. Using a non-tuple is equivalent to (name, '-h')", (3, 'build')], 'license_server_port': [None, 'Port for license server', (6, 'license')], 'dontcreateinstalldir': [False, 'Boolean to create (False) or not create (True) the install directory', (4, 'file-management')], 'cleanupoldinstall': [True, 'Boolean to remove (True) or backup (False) the previous install directory with identical name or not.', (4, 'file-management')], 'toolchainopts': [None, 'Extra options for compilers', (2, 'toolchain')], 'software_license': [None, 'Software license', (0, 'mandatory')], 'configopts': ['', 'Extra options passed to configure (default already has --prefix)', (3, 'build')], 'software_license_urls': [None, 'List of software license locations', (0, 'mandatory')]}'
 == 2014-05-18 10:34:18,605 main.easyconfig.templates DEBUG 'version found in easyconfig is 3.0-beta6'
 == 2014-05-18 10:34:18,605 main.easyconfig.templates DEBUG 'version found in easyconfig is 3.0-beta6'
 == 2014-05-18 10:34:18,605 main.easyconfig.templates DEBUG 'version found in easyconfig is 3.0-beta6'
 == 2014-05-18 10:34:18,605 main.easyconfig.templates DEBUG 'name: name, config: FoldX'
 == 2014-05-18 10:34:18,606 main.easyconfig.templates DEBUG 'name: version, config: 3.0-beta6'
 == 2014-05-18 10:34:18,606 main.easyconfig.templates DEBUG 'name: versionsuffix, config: '
 == 2014-05-18 10:34:18,606 main.easyconfig.templates DEBUG 'name: versionprefix, config: '
 == 2014-05-18 10:34:18,606 main.EB_FoldX INFO 'Running method configure_step part of step configure'
 == 2014-05-18 10:34:18,607 main.EB_FoldX INFO 'building...'
 == 2014-05-18 10:34:18,607 main.EB_FoldX INFO 'Starting build step'
 == 2014-05-18 10:34:18,608 main.easyconfig.templates DEBUG 'config: {'preinstallopts': ['', 'Extra prefix options for installation.', (3, 'build')], 'makeopts': ['', 'Extra options passed to make (default already has -j X)', (3, 'build')], 'moduleloadnoconflict': [False, "Don't check for conflicts, unload other versions instead ", (8, 'modules')], 'skip': [False, 'Skip existing software', (3, 'build')], 'cleanupoldbuild': [True, 'Boolean to remove (True) or backup (False) the previous build directory with identical name or not.', (4, 'file-management')], 'runtest': [None, 'Indicates if a test should be run after make; should specify argument after make (for e.g.,"test" for make test)', (3, 'build')], 'sources': [['%(name)s_30b6_linux64.zip'], 'List of source files', (3, 'build')], 'versionsuffix': ['', 'Additional suffix for software version (placed after toolchain name)', (3, 'build')], 'exts_defaultclass': [None, 'List of module for and name of the default extension class', (7, 'extensions')], 'keeppreviousinstall': [False, 'Boolean to keep the previous installation with identical name. Experts only!', (4, 'file-management')], 'checksums': [[], 'Checksums for sources and patches', (3, 'build')], 'skipsteps': [[], 'Skip these steps', (3, 'build')], 'parsed': [True, 'This is a parsed easyconfig', 'HIDDEN'], 'builddependencies': [[], 'List of build dependencies', (5, 'dependencies')], 'modextravars': [{}, 'Extra environment variables to be added to module file', (8, 'modules')], 'unpack_options': [None, 'Extra options for unpacking source', (3, 'build')], 'group': [None, 'Name of the user group for which the software should be available', (6, 'license')], 'patches': [[], 'List of patches to apply', (3, 'build')], 'easyblock': ['ConfigureMake', 'EasyBlock to use for building', (3, 'build')], 'easybuild_version': [None, 'EasyBuild-version this spec-file was written for', (3, 'build')], 'keepsymlinks': [False, 'Boolean to determine whether symlinks are to be kept during copying or if the content of the files pointed to should be copied', (4, 'file-management')], 'start_dir': ['/tmp/vsc40023/easybuild_build/FoldX/3.0-beta6/dummy-dummy/FoldX_30b6_linux64/', 'Path to start the make in. If the path is absolute, use that path. If not, this is added to the guessed path.', (4, 'file-management')], 'version': ['3.0-beta6', 'Version of software', (0, 'mandatory')], 'buildininstalldir': [False, 'Boolean to build (True) or not build (False) in the installation directory', (4, 'file-management')], 'allow_system_deps': [[], 'Allow listed system dependencies (format: (<name>, <version>))', (5, 'dependencies')], 'osdependencies': [[], 'OS dependencies that should be present on the system', (5, 'dependencies')], 'buildstats': [None, 'A list of dicts with build statistics', (9, 'other')], 'homepage': ['http://http://foldx.crg.es/', 'The homepage of the software', (0, 'mandatory')], 'premakeopts': ['', 'Extra options pre-passed to build command.', (3, 'build')], 'license_file': [None, 'License file for software', (6, 'license')], 'tests': [[], 'List of test-scripts to run after install. A test script should return a non-zero exit status to fail', (3, 'build')], 'license_server': [None, 'License server for software', (6, 'license')], 'description': ['FoldX is used to provide a fast and quantitative estimation of the importance of the interactions\n contributing to the stability of proteins and protein complexes.', 'A short description of the software', (0, 'mandatory')], 'modextrapaths': [{}, 'Extra paths to be prepended in module file', (8, 'modules')], 'exts_list': [[], 'List with extensions added to the base installation', (7, 'extensions')], 'docurls': [None, 'List of urls with documentation of the software (not necessarily on homepage)', (0, 'mandatory')], 'stop': [None, 'Keyword to halt the build process after a certain step.', (3, 'build')], 'source_urls': [[], 'List of URLs for source files', (3, 'build')], 'exts_classmap': [{}, 'Map of extension name to class for handling build and installation.', (7, 'extensions')], 'moduleforceunload': [False, 'Force unload of all modules when loading the extension', (8, 'modules')], 'dependencies': [[], 'List of dependencies', (5, 'dependencies')], 'moduleclass': ['bio', 'Module class to be used for this software', (8, 'modules')], 'key': [None, 'Key for installing software', (6, 'license')], 'toolchain': [{'version': 'dummy', 'name': 'dummy'}, 'Name and version of toolchain', (0, 'mandatory')], 'parallel': [1, 'Degree of parallelism for e.g. make (default: based on the number of cores, active cpuset and restrictions in ulimit)', (3, 'build')], 'exts_filter': [None, 'Extension filter details: template for cmd and input to cmd (templates for name, version and src).', (7, 'extensions')], 'versionprefix': ['', 'Additional prefix for software version (placed before version and toolchain name)', (3, 'build')], 'sanity_check_paths': [{'files': ['bin/%(namelower)s64Linux', 'rotabase.txt'], 'dirs': []}, "List of files and directories to check (format: {'files':<list>, 'dirs':<list>})", (3, 'build')], 'installopts': ['', 'Extra options for installation', (3, 'build')], 'onlytcmod': [False, 'Boolean/string to indicate if the toolchain should only load the environment with module (True) or also set all other variables (False) like compiler CC etc (if string: comma separated list of variables that will be ignored).', (2, 'toolchain')], 'unwanted_env_vars': [{}, "List of environment variables that shouldn't be set during build", (3, 'build')], 'name': ['FoldX', 'Name of software', (0, 'mandatory')], 'maxparallel': [None, 'Max degree of parallelism', (3, 'build')], 'preconfigopts': ['', 'Extra options pre-passed to configure.', (3, 'build')], 'sanity_check_commands': [[], "format: [(name, options)] e.g. [('gzip','-h')]. Using a non-tuple is equivalent to (name, '-h')", (3, 'build')], 'license_server_port': [None, 'Port for license server', (6, 'license')], 'dontcreateinstalldir': [False, 'Boolean to create (False) or not create (True) the install directory', (4, 'file-management')], 'cleanupoldinstall': [True, 'Boolean to remove (True) or backup (False) the previous install directory with identical name or not.', (4, 'file-management')], 'toolchainopts': [None, 'Extra options for compilers', (2, 'toolchain')], 'software_license': [None, 'Software license', (0, 'mandatory')], 'configopts': ['', 'Extra options passed to configure (default already has --prefix)', (3, 'build')], 'software_license_urls': [None, 'List of software license locations', (0, 'mandatory')]}'
 == 2014-05-18 10:34:18,609 main.easyconfig.templates DEBUG 'version found in easyconfig is 3.0-beta6'
 == 2014-05-18 10:34:18,609 main.easyconfig.templates DEBUG 'version found in easyconfig is 3.0-beta6'
 == 2014-05-18 10:34:18,609 main.easyconfig.templates DEBUG 'version found in easyconfig is 3.0-beta6'
 == 2014-05-18 10:34:18,609 main.easyconfig.templates DEBUG 'name: name, config: FoldX'
 == 2014-05-18 10:34:18,610 main.easyconfig.templates DEBUG 'name: version, config: 3.0-beta6'
 == 2014-05-18 10:34:18,610 main.easyconfig.templates DEBUG 'name: versionsuffix, config: '
 == 2014-05-18 10:34:18,610 main.easyconfig.templates DEBUG 'name: versionprefix, config: '
 == 2014-05-18 10:34:18,611 main.easyconfig.templates DEBUG 'config: {'preinstallopts': ['', 'Extra prefix options for installation.', (3, 'build')], 'makeopts': ['', 'Extra options passed to make (default already has -j X)', (3, 'build')], 'moduleloadnoconflict': [False, "Don't check for conflicts, unload other versions instead ", (8, 'modules')], 'skip': [False, 'Skip existing software', (3, 'build')], 'cleanupoldbuild': [True, 'Boolean to remove (True) or backup (False) the previous build directory with identical name or not.', (4, 'file-management')], 'runtest': [None, 'Indicates if a test should be run after make; should specify argument after make (for e.g.,"test" for make test)', (3, 'build')], 'sources': [['%(name)s_30b6_linux64.zip'], 'List of source files', (3, 'build')], 'versionsuffix': ['', 'Additional suffix for software version (placed after toolchain name)', (3, 'build')], 'exts_defaultclass': [None, 'List of module for and name of the default extension class', (7, 'extensions')], 'keeppreviousinstall': [False, 'Boolean to keep the previous installation with identical name. Experts only!', (4, 'file-management')], 'checksums': [[], 'Checksums for sources and patches', (3, 'build')], 'skipsteps': [[], 'Skip these steps', (3, 'build')], 'parsed': [True, 'This is a parsed easyconfig', 'HIDDEN'], 'builddependencies': [[], 'List of build dependencies', (5, 'dependencies')], 'modextravars': [{}, 'Extra environment variables to be added to module file', (8, 'modules')], 'unpack_options': [None, 'Extra options for unpacking source', (3, 'build')], 'group': [None, 'Name of the user group for which the software should be available', (6, 'license')], 'patches': [[], 'List of patches to apply', (3, 'build')], 'easyblock': ['ConfigureMake', 'EasyBlock to use for building', (3, 'build')], 'easybuild_version': [None, 'EasyBuild-version this spec-file was written for', (3, 'build')], 'keepsymlinks': [False, 'Boolean to determine whether symlinks are to be kept during copying or if the content of the files pointed to should be copied', (4, 'file-management')], 'start_dir': ['/tmp/vsc40023/easybuild_build/FoldX/3.0-beta6/dummy-dummy/FoldX_30b6_linux64/', 'Path to start the make in. If the path is absolute, use that path. If not, this is added to the guessed path.', (4, 'file-management')], 'version': ['3.0-beta6', 'Version of software', (0, 'mandatory')], 'buildininstalldir': [False, 'Boolean to build (True) or not build (False) in the installation directory', (4, 'file-management')], 'allow_system_deps': [[], 'Allow listed system dependencies (format: (<name>, <version>))', (5, 'dependencies')], 'osdependencies': [[], 'OS dependencies that should be present on the system', (5, 'dependencies')], 'buildstats': [None, 'A list of dicts with build statistics', (9, 'other')], 'homepage': ['http://http://foldx.crg.es/', 'The homepage of the software', (0, 'mandatory')], 'premakeopts': ['', 'Extra options pre-passed to build command.', (3, 'build')], 'license_file': [None, 'License file for software', (6, 'license')], 'tests': [[], 'List of test-scripts to run after install. A test script should return a non-zero exit status to fail', (3, 'build')], 'license_server': [None, 'License server for software', (6, 'license')], 'description': ['FoldX is used to provide a fast and quantitative estimation of the importance of the interactions\n contributing to the stability of proteins and protein complexes.', 'A short description of the software', (0, 'mandatory')], 'modextrapaths': [{}, 'Extra paths to be prepended in module file', (8, 'modules')], 'exts_list': [[], 'List with extensions added to the base installation', (7, 'extensions')], 'docurls': [None, 'List of urls with documentation of the software (not necessarily on homepage)', (0, 'mandatory')], 'stop': [None, 'Keyword to halt the build process after a certain step.', (3, 'build')], 'source_urls': [[], 'List of URLs for source files', (3, 'build')], 'exts_classmap': [{}, 'Map of extension name to class for handling build and installation.', (7, 'extensions')], 'moduleforceunload': [False, 'Force unload of all modules when loading the extension', (8, 'modules')], 'dependencies': [[], 'List of dependencies', (5, 'dependencies')], 'moduleclass': ['bio', 'Module class to be used for this software', (8, 'modules')], 'key': [None, 'Key for installing software', (6, 'license')], 'toolchain': [{'version': 'dummy', 'name': 'dummy'}, 'Name and version of toolchain', (0, 'mandatory')], 'parallel': [1, 'Degree of parallelism for e.g. make (default: based on the number of cores, active cpuset and restrictions in ulimit)', (3, 'build')], 'exts_filter': [None, 'Extension filter details: template for cmd and input to cmd (templates for name, version and src).', (7, 'extensions')], 'versionprefix': ['', 'Additional prefix for software version (placed before version and toolchain name)', (3, 'build')], 'sanity_check_paths': [{'files': ['bin/%(namelower)s64Linux', 'rotabase.txt'], 'dirs': []}, "List of files and directories to check (format: {'files':<list>, 'dirs':<list>})", (3, 'build')], 'installopts': ['', 'Extra options for installation', (3, 'build')], 'onlytcmod': [False, 'Boolean/string to indicate if the toolchain should only load the environment with module (True) or also set all other variables (False) like compiler CC etc (if string: comma separated list of variables that will be ignored).', (2, 'toolchain')], 'unwanted_env_vars': [{}, "List of environment variables that shouldn't be set during build", (3, 'build')], 'name': ['FoldX', 'Name of software', (0, 'mandatory')], 'maxparallel': [None, 'Max degree of parallelism', (3, 'build')], 'preconfigopts': ['', 'Extra options pre-passed to configure.', (3, 'build')], 'sanity_check_commands': [[], "format: [(name, options)] e.g. [('gzip','-h')]. Using a non-tuple is equivalent to (name, '-h')", (3, 'build')], 'license_server_port': [None, 'Port for license server', (6, 'license')], 'dontcreateinstalldir': [False, 'Boolean to create (False) or not create (True) the install directory', (4, 'file-management')], 'cleanupoldinstall': [True, 'Boolean to remove (True) or backup (False) the previous install directory with identical name or not.', (4, 'file-management')], 'toolchainopts': [None, 'Extra options for compilers', (2, 'toolchain')], 'software_license': [None, 'Software license', (0, 'mandatory')], 'configopts': ['', 'Extra options passed to configure (default already has --prefix)', (3, 'build')], 'software_license_urls': [None, 'List of software license locations', (0, 'mandatory')]}'
 == 2014-05-18 10:34:18,612 main.easyconfig.templates DEBUG 'version found in easyconfig is 3.0-beta6'
 == 2014-05-18 10:34:18,612 main.easyconfig.templates DEBUG 'version found in easyconfig is 3.0-beta6'
 == 2014-05-18 10:34:18,612 main.easyconfig.templates DEBUG 'version found in easyconfig is 3.0-beta6'
 == 2014-05-18 10:34:18,612 main.easyconfig.templates DEBUG 'name: name, config: FoldX'
 == 2014-05-18 10:34:18,613 main.easyconfig.templates DEBUG 'name: version, config: 3.0-beta6'
 == 2014-05-18 10:34:18,613 main.easyconfig.templates DEBUG 'name: versionsuffix, config: '
 == 2014-05-18 10:34:18,613 main.easyconfig.templates DEBUG 'name: versionprefix, config: '
 == 2014-05-18 10:34:18,613 main.EB_FoldX INFO 'Running method build_step part of step build'
 == 2014-05-18 10:34:18,613 main.EB_FoldX INFO 'testing...'
 == 2014-05-18 10:34:18,613 main.EB_FoldX INFO 'Starting test step'
 == 2014-05-18 10:34:18,614 main.easyconfig.templates DEBUG 'config: {'preinstallopts': ['', 'Extra prefix options for installation.', (3, 'build')], 'makeopts': ['', 'Extra options passed to make (default already has -j X)', (3, 'build')], 'moduleloadnoconflict': [False, "Don't check for conflicts, unload other versions instead ", (8, 'modules')], 'skip': [False, 'Skip existing software', (3, 'build')], 'cleanupoldbuild': [True, 'Boolean to remove (True) or backup (False) the previous build directory with identical name or not.', (4, 'file-management')], 'runtest': [None, 'Indicates if a test should be run after make; should specify argument after make (for e.g.,"test" for make test)', (3, 'build')], 'sources': [['%(name)s_30b6_linux64.zip'], 'List of source files', (3, 'build')], 'versionsuffix': ['', 'Additional suffix for software version (placed after toolchain name)', (3, 'build')], 'exts_defaultclass': [None, 'List of module for and name of the default extension class', (7, 'extensions')], 'keeppreviousinstall': [False, 'Boolean to keep the previous installation with identical name. Experts only!', (4, 'file-management')], 'checksums': [[], 'Checksums for sources and patches', (3, 'build')], 'skipsteps': [[], 'Skip these steps', (3, 'build')], 'parsed': [True, 'This is a parsed easyconfig', 'HIDDEN'], 'builddependencies': [[], 'List of build dependencies', (5, 'dependencies')], 'modextravars': [{}, 'Extra environment variables to be added to module file', (8, 'modules')], 'unpack_options': [None, 'Extra options for unpacking source', (3, 'build')], 'group': [None, 'Name of the user group for which the software should be available', (6, 'license')], 'patches': [[], 'List of patches to apply', (3, 'build')], 'easyblock': ['ConfigureMake', 'EasyBlock to use for building', (3, 'build')], 'easybuild_version': [None, 'EasyBuild-version this spec-file was written for', (3, 'build')], 'keepsymlinks': [False, 'Boolean to determine whether symlinks are to be kept during copying or if the content of the files pointed to should be copied', (4, 'file-management')], 'start_dir': ['/tmp/vsc40023/easybuild_build/FoldX/3.0-beta6/dummy-dummy/FoldX_30b6_linux64/', 'Path to start the make in. If the path is absolute, use that path. If not, this is added to the guessed path.', (4, 'file-management')], 'version': ['3.0-beta6', 'Version of software', (0, 'mandatory')], 'buildininstalldir': [False, 'Boolean to build (True) or not build (False) in the installation directory', (4, 'file-management')], 'allow_system_deps': [[], 'Allow listed system dependencies (format: (<name>, <version>))', (5, 'dependencies')], 'osdependencies': [[], 'OS dependencies that should be present on the system', (5, 'dependencies')], 'buildstats': [None, 'A list of dicts with build statistics', (9, 'other')], 'homepage': ['http://http://foldx.crg.es/', 'The homepage of the software', (0, 'mandatory')], 'premakeopts': ['', 'Extra options pre-passed to build command.', (3, 'build')], 'license_file': [None, 'License file for software', (6, 'license')], 'tests': [[], 'List of test-scripts to run after install. A test script should return a non-zero exit status to fail', (3, 'build')], 'license_server': [None, 'License server for software', (6, 'license')], 'description': ['FoldX is used to provide a fast and quantitative estimation of the importance of the interactions\n contributing to the stability of proteins and protein complexes.', 'A short description of the software', (0, 'mandatory')], 'modextrapaths': [{}, 'Extra paths to be prepended in module file', (8, 'modules')], 'exts_list': [[], 'List with extensions added to the base installation', (7, 'extensions')], 'docurls': [None, 'List of urls with documentation of the software (not necessarily on homepage)', (0, 'mandatory')], 'stop': [None, 'Keyword to halt the build process after a certain step.', (3, 'build')], 'source_urls': [[], 'List of URLs for source files', (3, 'build')], 'exts_classmap': [{}, 'Map of extension name to class for handling build and installation.', (7, 'extensions')], 'moduleforceunload': [False, 'Force unload of all modules when loading the extension', (8, 'modules')], 'dependencies': [[], 'List of dependencies', (5, 'dependencies')], 'moduleclass': ['bio', 'Module class to be used for this software', (8, 'modules')], 'key': [None, 'Key for installing software', (6, 'license')], 'toolchain': [{'version': 'dummy', 'name': 'dummy'}, 'Name and version of toolchain', (0, 'mandatory')], 'parallel': [1, 'Degree of parallelism for e.g. make (default: based on the number of cores, active cpuset and restrictions in ulimit)', (3, 'build')], 'exts_filter': [None, 'Extension filter details: template for cmd and input to cmd (templates for name, version and src).', (7, 'extensions')], 'versionprefix': ['', 'Additional prefix for software version (placed before version and toolchain name)', (3, 'build')], 'sanity_check_paths': [{'files': ['bin/%(namelower)s64Linux', 'rotabase.txt'], 'dirs': []}, "List of files and directories to check (format: {'files':<list>, 'dirs':<list>})", (3, 'build')], 'installopts': ['', 'Extra options for installation', (3, 'build')], 'onlytcmod': [False, 'Boolean/string to indicate if the toolchain should only load the environment with module (True) or also set all other variables (False) like compiler CC etc (if string: comma separated list of variables that will be ignored).', (2, 'toolchain')], 'unwanted_env_vars': [{}, "List of environment variables that shouldn't be set during build", (3, 'build')], 'name': ['FoldX', 'Name of software', (0, 'mandatory')], 'maxparallel': [None, 'Max degree of parallelism', (3, 'build')], 'preconfigopts': ['', 'Extra options pre-passed to configure.', (3, 'build')], 'sanity_check_commands': [[], "format: [(name, options)] e.g. [('gzip','-h')]. Using a non-tuple is equivalent to (name, '-h')", (3, 'build')], 'license_server_port': [None, 'Port for license server', (6, 'license')], 'dontcreateinstalldir': [False, 'Boolean to create (False) or not create (True) the install directory', (4, 'file-management')], 'cleanupoldinstall': [True, 'Boolean to remove (True) or backup (False) the previous install directory with identical name or not.', (4, 'file-management')], 'toolchainopts': [None, 'Extra options for compilers', (2, 'toolchain')], 'software_license': [None, 'Software license', (0, 'mandatory')], 'configopts': ['', 'Extra options passed to configure (default already has --prefix)', (3, 'build')], 'software_license_urls': [None, 'List of software license locations', (0, 'mandatory')]}'
 == 2014-05-18 10:34:18,615 main.easyconfig.templates DEBUG 'version found in easyconfig is 3.0-beta6'
 == 2014-05-18 10:34:18,616 main.easyconfig.templates DEBUG 'version found in easyconfig is 3.0-beta6'
 == 2014-05-18 10:34:18,616 main.easyconfig.templates DEBUG 'version found in easyconfig is 3.0-beta6'
 == 2014-05-18 10:34:18,616 main.easyconfig.templates DEBUG 'name: name, config: FoldX'
 == 2014-05-18 10:34:18,616 main.easyconfig.templates DEBUG 'name: version, config: 3.0-beta6'
 == 2014-05-18 10:34:18,616 main.easyconfig.templates DEBUG 'name: versionsuffix, config: '
 == 2014-05-18 10:34:18,616 main.easyconfig.templates DEBUG 'name: versionprefix, config: '
 == 2014-05-18 10:34:18,617 main.easyconfig.templates DEBUG 'config: {'preinstallopts': ['', 'Extra prefix options for installation.', (3, 'build')], 'makeopts': ['', 'Extra options passed to make (default already has -j X)', (3, 'build')], 'moduleloadnoconflict': [False, "Don't check for conflicts, unload other versions instead ", (8, 'modules')], 'skip': [False, 'Skip existing software', (3, 'build')], 'cleanupoldbuild': [True, 'Boolean to remove (True) or backup (False) the previous build directory with identical name or not.', (4, 'file-management')], 'runtest': [None, 'Indicates if a test should be run after make; should specify argument after make (for e.g.,"test" for make test)', (3, 'build')], 'sources': [['%(name)s_30b6_linux64.zip'], 'List of source files', (3, 'build')], 'versionsuffix': ['', 'Additional suffix for software version (placed after toolchain name)', (3, 'build')], 'exts_defaultclass': [None, 'List of module for and name of the default extension class', (7, 'extensions')], 'keeppreviousinstall': [False, 'Boolean to keep the previous installation with identical name. Experts only!', (4, 'file-management')], 'checksums': [[], 'Checksums for sources and patches', (3, 'build')], 'skipsteps': [[], 'Skip these steps', (3, 'build')], 'parsed': [True, 'This is a parsed easyconfig', 'HIDDEN'], 'builddependencies': [[], 'List of build dependencies', (5, 'dependencies')], 'modextravars': [{}, 'Extra environment variables to be added to module file', (8, 'modules')], 'unpack_options': [None, 'Extra options for unpacking source', (3, 'build')], 'group': [None, 'Name of the user group for which the software should be available', (6, 'license')], 'patches': [[], 'List of patches to apply', (3, 'build')], 'easyblock': ['ConfigureMake', 'EasyBlock to use for building', (3, 'build')], 'easybuild_version': [None, 'EasyBuild-version this spec-file was written for', (3, 'build')], 'keepsymlinks': [False, 'Boolean to determine whether symlinks are to be kept during copying or if the content of the files pointed to should be copied', (4, 'file-management')], 'start_dir': ['/tmp/vsc40023/easybuild_build/FoldX/3.0-beta6/dummy-dummy/FoldX_30b6_linux64/', 'Path to start the make in. If the path is absolute, use that path. If not, this is added to the guessed path.', (4, 'file-management')], 'version': ['3.0-beta6', 'Version of software', (0, 'mandatory')], 'buildininstalldir': [False, 'Boolean to build (True) or not build (False) in the installation directory', (4, 'file-management')], 'allow_system_deps': [[], 'Allow listed system dependencies (format: (<name>, <version>))', (5, 'dependencies')], 'osdependencies': [[], 'OS dependencies that should be present on the system', (5, 'dependencies')], 'buildstats': [None, 'A list of dicts with build statistics', (9, 'other')], 'homepage': ['http://http://foldx.crg.es/', 'The homepage of the software', (0, 'mandatory')], 'premakeopts': ['', 'Extra options pre-passed to build command.', (3, 'build')], 'license_file': [None, 'License file for software', (6, 'license')], 'tests': [[], 'List of test-scripts to run after install. A test script should return a non-zero exit status to fail', (3, 'build')], 'license_server': [None, 'License server for software', (6, 'license')], 'description': ['FoldX is used to provide a fast and quantitative estimation of the importance of the interactions\n contributing to the stability of proteins and protein complexes.', 'A short description of the software', (0, 'mandatory')], 'modextrapaths': [{}, 'Extra paths to be prepended in module file', (8, 'modules')], 'exts_list': [[], 'List with extensions added to the base installation', (7, 'extensions')], 'docurls': [None, 'List of urls with documentation of the software (not necessarily on homepage)', (0, 'mandatory')], 'stop': [None, 'Keyword to halt the build process after a certain step.', (3, 'build')], 'source_urls': [[], 'List of URLs for source files', (3, 'build')], 'exts_classmap': [{}, 'Map of extension name to class for handling build and installation.', (7, 'extensions')], 'moduleforceunload': [False, 'Force unload of all modules when loading the extension', (8, 'modules')], 'dependencies': [[], 'List of dependencies', (5, 'dependencies')], 'moduleclass': ['bio', 'Module class to be used for this software', (8, 'modules')], 'key': [None, 'Key for installing software', (6, 'license')], 'toolchain': [{'version': 'dummy', 'name': 'dummy'}, 'Name and version of toolchain', (0, 'mandatory')], 'parallel': [1, 'Degree of parallelism for e.g. make (default: based on the number of cores, active cpuset and restrictions in ulimit)', (3, 'build')], 'exts_filter': [None, 'Extension filter details: template for cmd and input to cmd (templates for name, version and src).', (7, 'extensions')], 'versionprefix': ['', 'Additional prefix for software version (placed before version and toolchain name)', (3, 'build')], 'sanity_check_paths': [{'files': ['bin/%(namelower)s64Linux', 'rotabase.txt'], 'dirs': []}, "List of files and directories to check (format: {'files':<list>, 'dirs':<list>})", (3, 'build')], 'installopts': ['', 'Extra options for installation', (3, 'build')], 'onlytcmod': [False, 'Boolean/string to indicate if the toolchain should only load the environment with module (True) or also set all other variables (False) like compiler CC etc (if string: comma separated list of variables that will be ignored).', (2, 'toolchain')], 'unwanted_env_vars': [{}, "List of environment variables that shouldn't be set during build", (3, 'build')], 'name': ['FoldX', 'Name of software', (0, 'mandatory')], 'maxparallel': [None, 'Max degree of parallelism', (3, 'build')], 'preconfigopts': ['', 'Extra options pre-passed to configure.', (3, 'build')], 'sanity_check_commands': [[], "format: [(name, options)] e.g. [('gzip','-h')]. Using a non-tuple is equivalent to (name, '-h')", (3, 'build')], 'license_server_port': [None, 'Port for license server', (6, 'license')], 'dontcreateinstalldir': [False, 'Boolean to create (False) or not create (True) the install directory', (4, 'file-management')], 'cleanupoldinstall': [True, 'Boolean to remove (True) or backup (False) the previous install directory with identical name or not.', (4, 'file-management')], 'toolchainopts': [None, 'Extra options for compilers', (2, 'toolchain')], 'software_license': [None, 'Software license', (0, 'mandatory')], 'configopts': ['', 'Extra options passed to configure (default already has --prefix)', (3, 'build')], 'software_license_urls': [None, 'List of software license locations', (0, 'mandatory')]}'
 == 2014-05-18 10:34:18,618 main.easyconfig.templates DEBUG 'version found in easyconfig is 3.0-beta6'
 == 2014-05-18 10:34:18,619 main.easyconfig.templates DEBUG 'version found in easyconfig is 3.0-beta6'
 == 2014-05-18 10:34:18,619 main.easyconfig.templates DEBUG 'version found in easyconfig is 3.0-beta6'
 == 2014-05-18 10:34:18,619 main.easyconfig.templates DEBUG 'name: name, config: FoldX'
 == 2014-05-18 10:34:18,619 main.easyconfig.templates DEBUG 'name: version, config: 3.0-beta6'
 == 2014-05-18 10:34:18,620 main.easyconfig.templates DEBUG 'name: versionsuffix, config: '
 == 2014-05-18 10:34:18,620 main.easyconfig.templates DEBUG 'name: versionprefix, config: '
 == 2014-05-18 10:34:18,620 main.EB_FoldX INFO 'Running method test_step part of step test'
 == 2014-05-18 10:34:18,620 main.EB_FoldX INFO 'installing...'
 == 2014-05-18 10:34:18,620 main.EB_FoldX INFO 'Starting install step'
 == 2014-05-18 10:34:18,621 main.easyconfig.templates DEBUG 'config: {'preinstallopts': ['', 'Extra prefix options for installation.', (3, 'build')], 'makeopts': ['', 'Extra options passed to make (default already has -j X)', (3, 'build')], 'moduleloadnoconflict': [False, "Don't check for conflicts, unload other versions instead ", (8, 'modules')], 'skip': [False, 'Skip existing software', (3, 'build')], 'cleanupoldbuild': [True, 'Boolean to remove (True) or backup (False) the previous build directory with identical name or not.', (4, 'file-management')], 'runtest': [None, 'Indicates if a test should be run after make; should specify argument after make (for e.g.,"test" for make test)', (3, 'build')], 'sources': [['%(name)s_30b6_linux64.zip'], 'List of source files', (3, 'build')], 'versionsuffix': ['', 'Additional suffix for software version (placed after toolchain name)', (3, 'build')], 'exts_defaultclass': [None, 'List of module for and name of the default extension class', (7, 'extensions')], 'keeppreviousinstall': [False, 'Boolean to keep the previous installation with identical name. Experts only!', (4, 'file-management')], 'checksums': [[], 'Checksums for sources and patches', (3, 'build')], 'skipsteps': [[], 'Skip these steps', (3, 'build')], 'parsed': [True, 'This is a parsed easyconfig', 'HIDDEN'], 'builddependencies': [[], 'List of build dependencies', (5, 'dependencies')], 'modextravars': [{}, 'Extra environment variables to be added to module file', (8, 'modules')], 'unpack_options': [None, 'Extra options for unpacking source', (3, 'build')], 'group': [None, 'Name of the user group for which the software should be available', (6, 'license')], 'patches': [[], 'List of patches to apply', (3, 'build')], 'easyblock': ['ConfigureMake', 'EasyBlock to use for building', (3, 'build')], 'easybuild_version': [None, 'EasyBuild-version this spec-file was written for', (3, 'build')], 'keepsymlinks': [False, 'Boolean to determine whether symlinks are to be kept during copying or if the content of the files pointed to should be copied', (4, 'file-management')], 'start_dir': ['/tmp/vsc40023/easybuild_build/FoldX/3.0-beta6/dummy-dummy/FoldX_30b6_linux64/', 'Path to start the make in. If the path is absolute, use that path. If not, this is added to the guessed path.', (4, 'file-management')], 'version': ['3.0-beta6', 'Version of software', (0, 'mandatory')], 'buildininstalldir': [False, 'Boolean to build (True) or not build (False) in the installation directory', (4, 'file-management')], 'allow_system_deps': [[], 'Allow listed system dependencies (format: (<name>, <version>))', (5, 'dependencies')], 'osdependencies': [[], 'OS dependencies that should be present on the system', (5, 'dependencies')], 'buildstats': [None, 'A list of dicts with build statistics', (9, 'other')], 'homepage': ['http://http://foldx.crg.es/', 'The homepage of the software', (0, 'mandatory')], 'premakeopts': ['', 'Extra options pre-passed to build command.', (3, 'build')], 'license_file': [None, 'License file for software', (6, 'license')], 'tests': [[], 'List of test-scripts to run after install. A test script should return a non-zero exit status to fail', (3, 'build')], 'license_server': [None, 'License server for software', (6, 'license')], 'description': ['FoldX is used to provide a fast and quantitative estimation of the importance of the interactions\n contributing to the stability of proteins and protein complexes.', 'A short description of the software', (0, 'mandatory')], 'modextrapaths': [{}, 'Extra paths to be prepended in module file', (8, 'modules')], 'exts_list': [[], 'List with extensions added to the base installation', (7, 'extensions')], 'docurls': [None, 'List of urls with documentation of the software (not necessarily on homepage)', (0, 'mandatory')], 'stop': [None, 'Keyword to halt the build process after a certain step.', (3, 'build')], 'source_urls': [[], 'List of URLs for source files', (3, 'build')], 'exts_classmap': [{}, 'Map of extension name to class for handling build and installation.', (7, 'extensions')], 'moduleforceunload': [False, 'Force unload of all modules when loading the extension', (8, 'modules')], 'dependencies': [[], 'List of dependencies', (5, 'dependencies')], 'moduleclass': ['bio', 'Module class to be used for this software', (8, 'modules')], 'key': [None, 'Key for installing software', (6, 'license')], 'toolchain': [{'version': 'dummy', 'name': 'dummy'}, 'Name and version of toolchain', (0, 'mandatory')], 'parallel': [1, 'Degree of parallelism for e.g. make (default: based on the number of cores, active cpuset and restrictions in ulimit)', (3, 'build')], 'exts_filter': [None, 'Extension filter details: template for cmd and input to cmd (templates for name, version and src).', (7, 'extensions')], 'versionprefix': ['', 'Additional prefix for software version (placed before version and toolchain name)', (3, 'build')], 'sanity_check_paths': [{'files': ['bin/%(namelower)s64Linux', 'rotabase.txt'], 'dirs': []}, "List of files and directories to check (format: {'files':<list>, 'dirs':<list>})", (3, 'build')], 'installopts': ['', 'Extra options for installation', (3, 'build')], 'onlytcmod': [False, 'Boolean/string to indicate if the toolchain should only load the environment with module (True) or also set all other variables (False) like compiler CC etc (if string: comma separated list of variables that will be ignored).', (2, 'toolchain')], 'unwanted_env_vars': [{}, "List of environment variables that shouldn't be set during build", (3, 'build')], 'name': ['FoldX', 'Name of software', (0, 'mandatory')], 'maxparallel': [None, 'Max degree of parallelism', (3, 'build')], 'preconfigopts': ['', 'Extra options pre-passed to configure.', (3, 'build')], 'sanity_check_commands': [[], "format: [(name, options)] e.g. [('gzip','-h')]. Using a non-tuple is equivalent to (name, '-h')", (3, 'build')], 'license_server_port': [None, 'Port for license server', (6, 'license')], 'dontcreateinstalldir': [False, 'Boolean to create (False) or not create (True) the install directory', (4, 'file-management')], 'cleanupoldinstall': [True, 'Boolean to remove (True) or backup (False) the previous install directory with identical name or not.', (4, 'file-management')], 'toolchainopts': [None, 'Extra options for compilers', (2, 'toolchain')], 'software_license': [None, 'Software license', (0, 'mandatory')], 'configopts': ['', 'Extra options passed to configure (default already has --prefix)', (3, 'build')], 'software_license_urls': [None, 'List of software license locations', (0, 'mandatory')]}'
 == 2014-05-18 10:34:18,622 main.easyconfig.templates DEBUG 'version found in easyconfig is 3.0-beta6'
 == 2014-05-18 10:34:18,622 main.easyconfig.templates DEBUG 'version found in easyconfig is 3.0-beta6'
 == 2014-05-18 10:34:18,623 main.easyconfig.templates DEBUG 'version found in easyconfig is 3.0-beta6'
 == 2014-05-18 10:34:18,623 main.easyconfig.templates DEBUG 'name: name, config: FoldX'
 == 2014-05-18 10:34:18,623 main.easyconfig.templates DEBUG 'name: version, config: 3.0-beta6'
 == 2014-05-18 10:34:18,623 main.easyconfig.templates DEBUG 'name: versionsuffix, config: '
 == 2014-05-18 10:34:18,623 main.easyconfig.templates DEBUG 'name: versionprefix, config: '
 == 2014-05-18 10:34:18,624 main.easyconfig.templates DEBUG 'config: {'preinstallopts': ['', 'Extra prefix options for installation.', (3, 'build')], 'makeopts': ['', 'Extra options passed to make (default already has -j X)', (3, 'build')], 'moduleloadnoconflict': [False, "Don't check for conflicts, unload other versions instead ", (8, 'modules')], 'skip': [False, 'Skip existing software', (3, 'build')], 'cleanupoldbuild': [True, 'Boolean to remove (True) or backup (False) the previous build directory with identical name or not.', (4, 'file-management')], 'runtest': [None, 'Indicates if a test should be run after make; should specify argument after make (for e.g.,"test" for make test)', (3, 'build')], 'sources': [['%(name)s_30b6_linux64.zip'], 'List of source files', (3, 'build')], 'versionsuffix': ['', 'Additional suffix for software version (placed after toolchain name)', (3, 'build')], 'exts_defaultclass': [None, 'List of module for and name of the default extension class', (7, 'extensions')], 'keeppreviousinstall': [False, 'Boolean to keep the previous installation with identical name. Experts only!', (4, 'file-management')], 'checksums': [[], 'Checksums for sources and patches', (3, 'build')], 'skipsteps': [[], 'Skip these steps', (3, 'build')], 'parsed': [True, 'This is a parsed easyconfig', 'HIDDEN'], 'builddependencies': [[], 'List of build dependencies', (5, 'dependencies')], 'modextravars': [{}, 'Extra environment variables to be added to module file', (8, 'modules')], 'unpack_options': [None, 'Extra options for unpacking source', (3, 'build')], 'group': [None, 'Name of the user group for which the software should be available', (6, 'license')], 'patches': [[], 'List of patches to apply', (3, 'build')], 'easyblock': ['ConfigureMake', 'EasyBlock to use for building', (3, 'build')], 'easybuild_version': [None, 'EasyBuild-version this spec-file was written for', (3, 'build')], 'keepsymlinks': [False, 'Boolean to determine whether symlinks are to be kept during copying or if the content of the files pointed to should be copied', (4, 'file-management')], 'start_dir': ['/tmp/vsc40023/easybuild_build/FoldX/3.0-beta6/dummy-dummy/FoldX_30b6_linux64/', 'Path to start the make in. If the path is absolute, use that path. If not, this is added to the guessed path.', (4, 'file-management')], 'version': ['3.0-beta6', 'Version of software', (0, 'mandatory')], 'buildininstalldir': [False, 'Boolean to build (True) or not build (False) in the installation directory', (4, 'file-management')], 'allow_system_deps': [[], 'Allow listed system dependencies (format: (<name>, <version>))', (5, 'dependencies')], 'osdependencies': [[], 'OS dependencies that should be present on the system', (5, 'dependencies')], 'buildstats': [None, 'A list of dicts with build statistics', (9, 'other')], 'homepage': ['http://http://foldx.crg.es/', 'The homepage of the software', (0, 'mandatory')], 'premakeopts': ['', 'Extra options pre-passed to build command.', (3, 'build')], 'license_file': [None, 'License file for software', (6, 'license')], 'tests': [[], 'List of test-scripts to run after install. A test script should return a non-zero exit status to fail', (3, 'build')], 'license_server': [None, 'License server for software', (6, 'license')], 'description': ['FoldX is used to provide a fast and quantitative estimation of the importance of the interactions\n contributing to the stability of proteins and protein complexes.', 'A short description of the software', (0, 'mandatory')], 'modextrapaths': [{}, 'Extra paths to be prepended in module file', (8, 'modules')], 'exts_list': [[], 'List with extensions added to the base installation', (7, 'extensions')], 'docurls': [None, 'List of urls with documentation of the software (not necessarily on homepage)', (0, 'mandatory')], 'stop': [None, 'Keyword to halt the build process after a certain step.', (3, 'build')], 'source_urls': [[], 'List of URLs for source files', (3, 'build')], 'exts_classmap': [{}, 'Map of extension name to class for handling build and installation.', (7, 'extensions')], 'moduleforceunload': [False, 'Force unload of all modules when loading the extension', (8, 'modules')], 'dependencies': [[], 'List of dependencies', (5, 'dependencies')], 'moduleclass': ['bio', 'Module class to be used for this software', (8, 'modules')], 'key': [None, 'Key for installing software', (6, 'license')], 'toolchain': [{'version': 'dummy', 'name': 'dummy'}, 'Name and version of toolchain', (0, 'mandatory')], 'parallel': [1, 'Degree of parallelism for e.g. make (default: based on the number of cores, active cpuset and restrictions in ulimit)', (3, 'build')], 'exts_filter': [None, 'Extension filter details: template for cmd and input to cmd (templates for name, version and src).', (7, 'extensions')], 'versionprefix': ['', 'Additional prefix for software version (placed before version and toolchain name)', (3, 'build')], 'sanity_check_paths': [{'files': ['bin/%(namelower)s64Linux', 'rotabase.txt'], 'dirs': []}, "List of files and directories to check (format: {'files':<list>, 'dirs':<list>})", (3, 'build')], 'installopts': ['', 'Extra options for installation', (3, 'build')], 'onlytcmod': [False, 'Boolean/string to indicate if the toolchain should only load the environment with module (True) or also set all other variables (False) like compiler CC etc (if string: comma separated list of variables that will be ignored).', (2, 'toolchain')], 'unwanted_env_vars': [{}, "List of environment variables that shouldn't be set during build", (3, 'build')], 'name': ['FoldX', 'Name of software', (0, 'mandatory')], 'maxparallel': [None, 'Max degree of parallelism', (3, 'build')], 'preconfigopts': ['', 'Extra options pre-passed to configure.', (3, 'build')], 'sanity_check_commands': [[], "format: [(name, options)] e.g. [('gzip','-h')]. Using a non-tuple is equivalent to (name, '-h')", (3, 'build')], 'license_server_port': [None, 'Port for license server', (6, 'license')], 'dontcreateinstalldir': [False, 'Boolean to create (False) or not create (True) the install directory', (4, 'file-management')], 'cleanupoldinstall': [True, 'Boolean to remove (True) or backup (False) the previous install directory with identical name or not.', (4, 'file-management')], 'toolchainopts': [None, 'Extra options for compilers', (2, 'toolchain')], 'software_license': [None, 'Software license', (0, 'mandatory')], 'configopts': ['', 'Extra options passed to configure (default already has --prefix)', (3, 'build')], 'software_license_urls': [None, 'List of software license locations', (0, 'mandatory')]}'
 == 2014-05-18 10:34:18,625 main.easyconfig.templates DEBUG 'version found in easyconfig is 3.0-beta6'
 == 2014-05-18 10:34:18,625 main.easyconfig.templates DEBUG 'version found in easyconfig is 3.0-beta6'
 == 2014-05-18 10:34:18,626 main.easyconfig.templates DEBUG 'version found in easyconfig is 3.0-beta6'
 == 2014-05-18 10:34:18,626 main.easyconfig.templates DEBUG 'name: name, config: FoldX'
 == 2014-05-18 10:34:18,626 main.easyconfig.templates DEBUG 'name: version, config: 3.0-beta6'
 == 2014-05-18 10:34:18,626 main.easyconfig.templates DEBUG 'name: versionsuffix, config: '
 == 2014-05-18 10:34:18,626 main.easyconfig.templates DEBUG 'name: versionprefix, config: '
 == 2014-05-18 10:34:18,627 main.EB_FoldX INFO 'Running method stage_install_step part of step install'
 == 2014-05-18 10:34:18,627 main.EB_FoldX INFO 'Running method make_installdir part of step install'
 == 2014-05-18 10:34:18,627 main.EB_FoldX DEBUG 'Creating the installation directory /user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/FoldX/3.0-beta6 (cleanup: True)'
 == 2014-05-18 10:34:18,627 main.filetools INFO 'Creating directory /user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/FoldX/3.0-beta6 (parents: True, set_gid: False, sticky: False)'
 == 2014-05-18 10:34:18,629 main.EB_FoldX INFO 'Running method install_step part of step install'
 == 2014-05-18 10:34:18,636 main.EB_FoldX DEBUG 'Copied foldx64Linux to install dir /user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/FoldX/3.0-beta6'
 == 2014-05-18 10:34:18,640 main.EB_FoldX DEBUG 'Copied rotabase.txt to install dir /user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/FoldX/3.0-beta6'
 == 2014-05-18 10:34:18,640 main.EB_FoldX INFO 'taking care of extensions...'
 == 2014-05-18 10:34:18,640 main.EB_FoldX INFO 'Starting extensions step'
 == 2014-05-18 10:34:18,641 main.easyconfig.templates DEBUG 'config: {'preinstallopts': ['', 'Extra prefix options for installation.', (3, 'build')], 'makeopts': ['', 'Extra options passed to make (default already has -j X)', (3, 'build')], 'moduleloadnoconflict': [False, "Don't check for conflicts, unload other versions instead ", (8, 'modules')], 'skip': [False, 'Skip existing software', (3, 'build')], 'cleanupoldbuild': [True, 'Boolean to remove (True) or backup (False) the previous build directory with identical name or not.', (4, 'file-management')], 'runtest': [None, 'Indicates if a test should be run after make; should specify argument after make (for e.g.,"test" for make test)', (3, 'build')], 'sources': [['%(name)s_30b6_linux64.zip'], 'List of source files', (3, 'build')], 'versionsuffix': ['', 'Additional suffix for software version (placed after toolchain name)', (3, 'build')], 'exts_defaultclass': [None, 'List of module for and name of the default extension class', (7, 'extensions')], 'keeppreviousinstall': [False, 'Boolean to keep the previous installation with identical name. Experts only!', (4, 'file-management')], 'checksums': [[], 'Checksums for sources and patches', (3, 'build')], 'skipsteps': [[], 'Skip these steps', (3, 'build')], 'parsed': [True, 'This is a parsed easyconfig', 'HIDDEN'], 'builddependencies': [[], 'List of build dependencies', (5, 'dependencies')], 'modextravars': [{}, 'Extra environment variables to be added to module file', (8, 'modules')], 'unpack_options': [None, 'Extra options for unpacking source', (3, 'build')], 'group': [None, 'Name of the user group for which the software should be available', (6, 'license')], 'patches': [[], 'List of patches to apply', (3, 'build')], 'easyblock': ['ConfigureMake', 'EasyBlock to use for building', (3, 'build')], 'easybuild_version': [None, 'EasyBuild-version this spec-file was written for', (3, 'build')], 'keepsymlinks': [False, 'Boolean to determine whether symlinks are to be kept during copying or if the content of the files pointed to should be copied', (4, 'file-management')], 'start_dir': ['/tmp/vsc40023/easybuild_build/FoldX/3.0-beta6/dummy-dummy/FoldX_30b6_linux64/', 'Path to start the make in. If the path is absolute, use that path. If not, this is added to the guessed path.', (4, 'file-management')], 'version': ['3.0-beta6', 'Version of software', (0, 'mandatory')], 'buildininstalldir': [False, 'Boolean to build (True) or not build (False) in the installation directory', (4, 'file-management')], 'allow_system_deps': [[], 'Allow listed system dependencies (format: (<name>, <version>))', (5, 'dependencies')], 'osdependencies': [[], 'OS dependencies that should be present on the system', (5, 'dependencies')], 'buildstats': [None, 'A list of dicts with build statistics', (9, 'other')], 'homepage': ['http://http://foldx.crg.es/', 'The homepage of the software', (0, 'mandatory')], 'premakeopts': ['', 'Extra options pre-passed to build command.', (3, 'build')], 'license_file': [None, 'License file for software', (6, 'license')], 'tests': [[], 'List of test-scripts to run after install. A test script should return a non-zero exit status to fail', (3, 'build')], 'license_server': [None, 'License server for software', (6, 'license')], 'description': ['FoldX is used to provide a fast and quantitative estimation of the importance of the interactions\n contributing to the stability of proteins and protein complexes.', 'A short description of the software', (0, 'mandatory')], 'modextrapaths': [{}, 'Extra paths to be prepended in module file', (8, 'modules')], 'exts_list': [[], 'List with extensions added to the base installation', (7, 'extensions')], 'docurls': [None, 'List of urls with documentation of the software (not necessarily on homepage)', (0, 'mandatory')], 'stop': [None, 'Keyword to halt the build process after a certain step.', (3, 'build')], 'source_urls': [[], 'List of URLs for source files', (3, 'build')], 'exts_classmap': [{}, 'Map of extension name to class for handling build and installation.', (7, 'extensions')], 'moduleforceunload': [False, 'Force unload of all modules when loading the extension', (8, 'modules')], 'dependencies': [[], 'List of dependencies', (5, 'dependencies')], 'moduleclass': ['bio', 'Module class to be used for this software', (8, 'modules')], 'key': [None, 'Key for installing software', (6, 'license')], 'toolchain': [{'version': 'dummy', 'name': 'dummy'}, 'Name and version of toolchain', (0, 'mandatory')], 'parallel': [1, 'Degree of parallelism for e.g. make (default: based on the number of cores, active cpuset and restrictions in ulimit)', (3, 'build')], 'exts_filter': [None, 'Extension filter details: template for cmd and input to cmd (templates for name, version and src).', (7, 'extensions')], 'versionprefix': ['', 'Additional prefix for software version (placed before version and toolchain name)', (3, 'build')], 'sanity_check_paths': [{'files': ['bin/%(namelower)s64Linux', 'rotabase.txt'], 'dirs': []}, "List of files and directories to check (format: {'files':<list>, 'dirs':<list>})", (3, 'build')], 'installopts': ['', 'Extra options for installation', (3, 'build')], 'onlytcmod': [False, 'Boolean/string to indicate if the toolchain should only load the environment with module (True) or also set all other variables (False) like compiler CC etc (if string: comma separated list of variables that will be ignored).', (2, 'toolchain')], 'unwanted_env_vars': [{}, "List of environment variables that shouldn't be set during build", (3, 'build')], 'name': ['FoldX', 'Name of software', (0, 'mandatory')], 'maxparallel': [None, 'Max degree of parallelism', (3, 'build')], 'preconfigopts': ['', 'Extra options pre-passed to configure.', (3, 'build')], 'sanity_check_commands': [[], "format: [(name, options)] e.g. [('gzip','-h')]. Using a non-tuple is equivalent to (name, '-h')", (3, 'build')], 'license_server_port': [None, 'Port for license server', (6, 'license')], 'dontcreateinstalldir': [False, 'Boolean to create (False) or not create (True) the install directory', (4, 'file-management')], 'cleanupoldinstall': [True, 'Boolean to remove (True) or backup (False) the previous install directory with identical name or not.', (4, 'file-management')], 'toolchainopts': [None, 'Extra options for compilers', (2, 'toolchain')], 'software_license': [None, 'Software license', (0, 'mandatory')], 'configopts': ['', 'Extra options passed to configure (default already has --prefix)', (3, 'build')], 'software_license_urls': [None, 'List of software license locations', (0, 'mandatory')]}'
 == 2014-05-18 10:34:18,642 main.easyconfig.templates DEBUG 'version found in easyconfig is 3.0-beta6'
 == 2014-05-18 10:34:18,643 main.easyconfig.templates DEBUG 'version found in easyconfig is 3.0-beta6'
 == 2014-05-18 10:34:18,643 main.easyconfig.templates DEBUG 'version found in easyconfig is 3.0-beta6'
 == 2014-05-18 10:34:18,643 main.easyconfig.templates DEBUG 'name: name, config: FoldX'
 == 2014-05-18 10:34:18,643 main.easyconfig.templates DEBUG 'name: version, config: 3.0-beta6'
 == 2014-05-18 10:34:18,643 main.easyconfig.templates DEBUG 'name: versionsuffix, config: '
 == 2014-05-18 10:34:18,644 main.easyconfig.templates DEBUG 'name: versionprefix, config: '
 == 2014-05-18 10:34:18,644 main.easyconfig.templates DEBUG 'config: {'preinstallopts': ['', 'Extra prefix options for installation.', (3, 'build')], 'makeopts': ['', 'Extra options passed to make (default already has -j X)', (3, 'build')], 'moduleloadnoconflict': [False, "Don't check for conflicts, unload other versions instead ", (8, 'modules')], 'skip': [False, 'Skip existing software', (3, 'build')], 'cleanupoldbuild': [True, 'Boolean to remove (True) or backup (False) the previous build directory with identical name or not.', (4, 'file-management')], 'runtest': [None, 'Indicates if a test should be run after make; should specify argument after make (for e.g.,"test" for make test)', (3, 'build')], 'sources': [['%(name)s_30b6_linux64.zip'], 'List of source files', (3, 'build')], 'versionsuffix': ['', 'Additional suffix for software version (placed after toolchain name)', (3, 'build')], 'exts_defaultclass': [None, 'List of module for and name of the default extension class', (7, 'extensions')], 'keeppreviousinstall': [False, 'Boolean to keep the previous installation with identical name. Experts only!', (4, 'file-management')], 'checksums': [[], 'Checksums for sources and patches', (3, 'build')], 'skipsteps': [[], 'Skip these steps', (3, 'build')], 'parsed': [True, 'This is a parsed easyconfig', 'HIDDEN'], 'builddependencies': [[], 'List of build dependencies', (5, 'dependencies')], 'modextravars': [{}, 'Extra environment variables to be added to module file', (8, 'modules')], 'unpack_options': [None, 'Extra options for unpacking source', (3, 'build')], 'group': [None, 'Name of the user group for which the software should be available', (6, 'license')], 'patches': [[], 'List of patches to apply', (3, 'build')], 'easyblock': ['ConfigureMake', 'EasyBlock to use for building', (3, 'build')], 'easybuild_version': [None, 'EasyBuild-version this spec-file was written for', (3, 'build')], 'keepsymlinks': [False, 'Boolean to determine whether symlinks are to be kept during copying or if the content of the files pointed to should be copied', (4, 'file-management')], 'start_dir': ['/tmp/vsc40023/easybuild_build/FoldX/3.0-beta6/dummy-dummy/FoldX_30b6_linux64/', 'Path to start the make in. If the path is absolute, use that path. If not, this is added to the guessed path.', (4, 'file-management')], 'version': ['3.0-beta6', 'Version of software', (0, 'mandatory')], 'buildininstalldir': [False, 'Boolean to build (True) or not build (False) in the installation directory', (4, 'file-management')], 'allow_system_deps': [[], 'Allow listed system dependencies (format: (<name>, <version>))', (5, 'dependencies')], 'osdependencies': [[], 'OS dependencies that should be present on the system', (5, 'dependencies')], 'buildstats': [None, 'A list of dicts with build statistics', (9, 'other')], 'homepage': ['http://http://foldx.crg.es/', 'The homepage of the software', (0, 'mandatory')], 'premakeopts': ['', 'Extra options pre-passed to build command.', (3, 'build')], 'license_file': [None, 'License file for software', (6, 'license')], 'tests': [[], 'List of test-scripts to run after install. A test script should return a non-zero exit status to fail', (3, 'build')], 'license_server': [None, 'License server for software', (6, 'license')], 'description': ['FoldX is used to provide a fast and quantitative estimation of the importance of the interactions\n contributing to the stability of proteins and protein complexes.', 'A short description of the software', (0, 'mandatory')], 'modextrapaths': [{}, 'Extra paths to be prepended in module file', (8, 'modules')], 'exts_list': [[], 'List with extensions added to the base installation', (7, 'extensions')], 'docurls': [None, 'List of urls with documentation of the software (not necessarily on homepage)', (0, 'mandatory')], 'stop': [None, 'Keyword to halt the build process after a certain step.', (3, 'build')], 'source_urls': [[], 'List of URLs for source files', (3, 'build')], 'exts_classmap': [{}, 'Map of extension name to class for handling build and installation.', (7, 'extensions')], 'moduleforceunload': [False, 'Force unload of all modules when loading the extension', (8, 'modules')], 'dependencies': [[], 'List of dependencies', (5, 'dependencies')], 'moduleclass': ['bio', 'Module class to be used for this software', (8, 'modules')], 'key': [None, 'Key for installing software', (6, 'license')], 'toolchain': [{'version': 'dummy', 'name': 'dummy'}, 'Name and version of toolchain', (0, 'mandatory')], 'parallel': [1, 'Degree of parallelism for e.g. make (default: based on the number of cores, active cpuset and restrictions in ulimit)', (3, 'build')], 'exts_filter': [None, 'Extension filter details: template for cmd and input to cmd (templates for name, version and src).', (7, 'extensions')], 'versionprefix': ['', 'Additional prefix for software version (placed before version and toolchain name)', (3, 'build')], 'sanity_check_paths': [{'files': ['bin/%(namelower)s64Linux', 'rotabase.txt'], 'dirs': []}, "List of files and directories to check (format: {'files':<list>, 'dirs':<list>})", (3, 'build')], 'installopts': ['', 'Extra options for installation', (3, 'build')], 'onlytcmod': [False, 'Boolean/string to indicate if the toolchain should only load the environment with module (True) or also set all other variables (False) like compiler CC etc (if string: comma separated list of variables that will be ignored).', (2, 'toolchain')], 'unwanted_env_vars': [{}, "List of environment variables that shouldn't be set during build", (3, 'build')], 'name': ['FoldX', 'Name of software', (0, 'mandatory')], 'maxparallel': [None, 'Max degree of parallelism', (3, 'build')], 'preconfigopts': ['', 'Extra options pre-passed to configure.', (3, 'build')], 'sanity_check_commands': [[], "format: [(name, options)] e.g. [('gzip','-h')]. Using a non-tuple is equivalent to (name, '-h')", (3, 'build')], 'license_server_port': [None, 'Port for license server', (6, 'license')], 'dontcreateinstalldir': [False, 'Boolean to create (False) or not create (True) the install directory', (4, 'file-management')], 'cleanupoldinstall': [True, 'Boolean to remove (True) or backup (False) the previous install directory with identical name or not.', (4, 'file-management')], 'toolchainopts': [None, 'Extra options for compilers', (2, 'toolchain')], 'software_license': [None, 'Software license', (0, 'mandatory')], 'configopts': ['', 'Extra options passed to configure (default already has --prefix)', (3, 'build')], 'software_license_urls': [None, 'List of software license locations', (0, 'mandatory')]}'
 == 2014-05-18 10:34:18,645 main.easyconfig.templates DEBUG 'version found in easyconfig is 3.0-beta6'
 == 2014-05-18 10:34:18,646 main.easyconfig.templates DEBUG 'version found in easyconfig is 3.0-beta6'
 == 2014-05-18 10:34:18,646 main.easyconfig.templates DEBUG 'version found in easyconfig is 3.0-beta6'
 == 2014-05-18 10:34:18,646 main.easyconfig.templates DEBUG 'name: name, config: FoldX'
 == 2014-05-18 10:34:18,646 main.easyconfig.templates DEBUG 'name: version, config: 3.0-beta6'
 == 2014-05-18 10:34:18,647 main.easyconfig.templates DEBUG 'name: versionsuffix, config: '
 == 2014-05-18 10:34:18,647 main.easyconfig.templates DEBUG 'name: versionprefix, config: '
 == 2014-05-18 10:34:18,647 main.EB_FoldX INFO 'Running method extensions_step part of step extensions'
 == 2014-05-18 10:34:18,647 main.EB_FoldX DEBUG 'No extensions in exts_list'
 == 2014-05-18 10:34:18,647 main.EB_FoldX INFO 'packaging...'
 == 2014-05-18 10:34:18,648 main.EB_FoldX INFO 'Starting package step'
 == 2014-05-18 10:34:18,648 main.easyconfig.templates DEBUG 'config: {'preinstallopts': ['', 'Extra prefix options for installation.', (3, 'build')], 'makeopts': ['', 'Extra options passed to make (default already has -j X)', (3, 'build')], 'moduleloadnoconflict': [False, "Don't check for conflicts, unload other versions instead ", (8, 'modules')], 'skip': [False, 'Skip existing software', (3, 'build')], 'cleanupoldbuild': [True, 'Boolean to remove (True) or backup (False) the previous build directory with identical name or not.', (4, 'file-management')], 'runtest': [None, 'Indicates if a test should be run after make; should specify argument after make (for e.g.,"test" for make test)', (3, 'build')], 'sources': [['%(name)s_30b6_linux64.zip'], 'List of source files', (3, 'build')], 'versionsuffix': ['', 'Additional suffix for software version (placed after toolchain name)', (3, 'build')], 'exts_defaultclass': [None, 'List of module for and name of the default extension class', (7, 'extensions')], 'keeppreviousinstall': [False, 'Boolean to keep the previous installation with identical name. Experts only!', (4, 'file-management')], 'checksums': [[], 'Checksums for sources and patches', (3, 'build')], 'skipsteps': [[], 'Skip these steps', (3, 'build')], 'parsed': [True, 'This is a parsed easyconfig', 'HIDDEN'], 'builddependencies': [[], 'List of build dependencies', (5, 'dependencies')], 'modextravars': [{}, 'Extra environment variables to be added to module file', (8, 'modules')], 'unpack_options': [None, 'Extra options for unpacking source', (3, 'build')], 'group': [None, 'Name of the user group for which the software should be available', (6, 'license')], 'patches': [[], 'List of patches to apply', (3, 'build')], 'easyblock': ['ConfigureMake', 'EasyBlock to use for building', (3, 'build')], 'easybuild_version': [None, 'EasyBuild-version this spec-file was written for', (3, 'build')], 'keepsymlinks': [False, 'Boolean to determine whether symlinks are to be kept during copying or if the content of the files pointed to should be copied', (4, 'file-management')], 'start_dir': ['/tmp/vsc40023/easybuild_build/FoldX/3.0-beta6/dummy-dummy/FoldX_30b6_linux64/', 'Path to start the make in. If the path is absolute, use that path. If not, this is added to the guessed path.', (4, 'file-management')], 'version': ['3.0-beta6', 'Version of software', (0, 'mandatory')], 'buildininstalldir': [False, 'Boolean to build (True) or not build (False) in the installation directory', (4, 'file-management')], 'allow_system_deps': [[], 'Allow listed system dependencies (format: (<name>, <version>))', (5, 'dependencies')], 'osdependencies': [[], 'OS dependencies that should be present on the system', (5, 'dependencies')], 'buildstats': [None, 'A list of dicts with build statistics', (9, 'other')], 'homepage': ['http://http://foldx.crg.es/', 'The homepage of the software', (0, 'mandatory')], 'premakeopts': ['', 'Extra options pre-passed to build command.', (3, 'build')], 'license_file': [None, 'License file for software', (6, 'license')], 'tests': [[], 'List of test-scripts to run after install. A test script should return a non-zero exit status to fail', (3, 'build')], 'license_server': [None, 'License server for software', (6, 'license')], 'description': ['FoldX is used to provide a fast and quantitative estimation of the importance of the interactions\n contributing to the stability of proteins and protein complexes.', 'A short description of the software', (0, 'mandatory')], 'modextrapaths': [{}, 'Extra paths to be prepended in module file', (8, 'modules')], 'exts_list': [[], 'List with extensions added to the base installation', (7, 'extensions')], 'docurls': [None, 'List of urls with documentation of the software (not necessarily on homepage)', (0, 'mandatory')], 'stop': [None, 'Keyword to halt the build process after a certain step.', (3, 'build')], 'source_urls': [[], 'List of URLs for source files', (3, 'build')], 'exts_classmap': [{}, 'Map of extension name to class for handling build and installation.', (7, 'extensions')], 'moduleforceunload': [False, 'Force unload of all modules when loading the extension', (8, 'modules')], 'dependencies': [[], 'List of dependencies', (5, 'dependencies')], 'moduleclass': ['bio', 'Module class to be used for this software', (8, 'modules')], 'key': [None, 'Key for installing software', (6, 'license')], 'toolchain': [{'version': 'dummy', 'name': 'dummy'}, 'Name and version of toolchain', (0, 'mandatory')], 'parallel': [1, 'Degree of parallelism for e.g. make (default: based on the number of cores, active cpuset and restrictions in ulimit)', (3, 'build')], 'exts_filter': [None, 'Extension filter details: template for cmd and input to cmd (templates for name, version and src).', (7, 'extensions')], 'versionprefix': ['', 'Additional prefix for software version (placed before version and toolchain name)', (3, 'build')], 'sanity_check_paths': [{'files': ['bin/%(namelower)s64Linux', 'rotabase.txt'], 'dirs': []}, "List of files and directories to check (format: {'files':<list>, 'dirs':<list>})", (3, 'build')], 'installopts': ['', 'Extra options for installation', (3, 'build')], 'onlytcmod': [False, 'Boolean/string to indicate if the toolchain should only load the environment with module (True) or also set all other variables (False) like compiler CC etc (if string: comma separated list of variables that will be ignored).', (2, 'toolchain')], 'unwanted_env_vars': [{}, "List of environment variables that shouldn't be set during build", (3, 'build')], 'name': ['FoldX', 'Name of software', (0, 'mandatory')], 'maxparallel': [None, 'Max degree of parallelism', (3, 'build')], 'preconfigopts': ['', 'Extra options pre-passed to configure.', (3, 'build')], 'sanity_check_commands': [[], "format: [(name, options)] e.g. [('gzip','-h')]. Using a non-tuple is equivalent to (name, '-h')", (3, 'build')], 'license_server_port': [None, 'Port for license server', (6, 'license')], 'dontcreateinstalldir': [False, 'Boolean to create (False) or not create (True) the install directory', (4, 'file-management')], 'cleanupoldinstall': [True, 'Boolean to remove (True) or backup (False) the previous install directory with identical name or not.', (4, 'file-management')], 'toolchainopts': [None, 'Extra options for compilers', (2, 'toolchain')], 'software_license': [None, 'Software license', (0, 'mandatory')], 'configopts': ['', 'Extra options passed to configure (default already has --prefix)', (3, 'build')], 'software_license_urls': [None, 'List of software license locations', (0, 'mandatory')]}'
 == 2014-05-18 10:34:18,649 main.easyconfig.templates DEBUG 'version found in easyconfig is 3.0-beta6'
 == 2014-05-18 10:34:18,650 main.easyconfig.templates DEBUG 'version found in easyconfig is 3.0-beta6'
 == 2014-05-18 10:34:18,650 main.easyconfig.templates DEBUG 'version found in easyconfig is 3.0-beta6'
 == 2014-05-18 10:34:18,650 main.easyconfig.templates DEBUG 'name: name, config: FoldX'
 == 2014-05-18 10:34:18,650 main.easyconfig.templates DEBUG 'name: version, config: 3.0-beta6'
 == 2014-05-18 10:34:18,650 main.easyconfig.templates DEBUG 'name: versionsuffix, config: '
 == 2014-05-18 10:34:18,651 main.easyconfig.templates DEBUG 'name: versionprefix, config: '
 == 2014-05-18 10:34:18,651 main.easyconfig.templates DEBUG 'config: {'preinstallopts': ['', 'Extra prefix options for installation.', (3, 'build')], 'makeopts': ['', 'Extra options passed to make (default already has -j X)', (3, 'build')], 'moduleloadnoconflict': [False, "Don't check for conflicts, unload other versions instead ", (8, 'modules')], 'skip': [False, 'Skip existing software', (3, 'build')], 'cleanupoldbuild': [True, 'Boolean to remove (True) or backup (False) the previous build directory with identical name or not.', (4, 'file-management')], 'runtest': [None, 'Indicates if a test should be run after make; should specify argument after make (for e.g.,"test" for make test)', (3, 'build')], 'sources': [['%(name)s_30b6_linux64.zip'], 'List of source files', (3, 'build')], 'versionsuffix': ['', 'Additional suffix for software version (placed after toolchain name)', (3, 'build')], 'exts_defaultclass': [None, 'List of module for and name of the default extension class', (7, 'extensions')], 'keeppreviousinstall': [False, 'Boolean to keep the previous installation with identical name. Experts only!', (4, 'file-management')], 'checksums': [[], 'Checksums for sources and patches', (3, 'build')], 'skipsteps': [[], 'Skip these steps', (3, 'build')], 'parsed': [True, 'This is a parsed easyconfig', 'HIDDEN'], 'builddependencies': [[], 'List of build dependencies', (5, 'dependencies')], 'modextravars': [{}, 'Extra environment variables to be added to module file', (8, 'modules')], 'unpack_options': [None, 'Extra options for unpacking source', (3, 'build')], 'group': [None, 'Name of the user group for which the software should be available', (6, 'license')], 'patches': [[], 'List of patches to apply', (3, 'build')], 'easyblock': ['ConfigureMake', 'EasyBlock to use for building', (3, 'build')], 'easybuild_version': [None, 'EasyBuild-version this spec-file was written for', (3, 'build')], 'keepsymlinks': [False, 'Boolean to determine whether symlinks are to be kept during copying or if the content of the files pointed to should be copied', (4, 'file-management')], 'start_dir': ['/tmp/vsc40023/easybuild_build/FoldX/3.0-beta6/dummy-dummy/FoldX_30b6_linux64/', 'Path to start the make in. If the path is absolute, use that path. If not, this is added to the guessed path.', (4, 'file-management')], 'version': ['3.0-beta6', 'Version of software', (0, 'mandatory')], 'buildininstalldir': [False, 'Boolean to build (True) or not build (False) in the installation directory', (4, 'file-management')], 'allow_system_deps': [[], 'Allow listed system dependencies (format: (<name>, <version>))', (5, 'dependencies')], 'osdependencies': [[], 'OS dependencies that should be present on the system', (5, 'dependencies')], 'buildstats': [None, 'A list of dicts with build statistics', (9, 'other')], 'homepage': ['http://http://foldx.crg.es/', 'The homepage of the software', (0, 'mandatory')], 'premakeopts': ['', 'Extra options pre-passed to build command.', (3, 'build')], 'license_file': [None, 'License file for software', (6, 'license')], 'tests': [[], 'List of test-scripts to run after install. A test script should return a non-zero exit status to fail', (3, 'build')], 'license_server': [None, 'License server for software', (6, 'license')], 'description': ['FoldX is used to provide a fast and quantitative estimation of the importance of the interactions\n contributing to the stability of proteins and protein complexes.', 'A short description of the software', (0, 'mandatory')], 'modextrapaths': [{}, 'Extra paths to be prepended in module file', (8, 'modules')], 'exts_list': [[], 'List with extensions added to the base installation', (7, 'extensions')], 'docurls': [None, 'List of urls with documentation of the software (not necessarily on homepage)', (0, 'mandatory')], 'stop': [None, 'Keyword to halt the build process after a certain step.', (3, 'build')], 'source_urls': [[], 'List of URLs for source files', (3, 'build')], 'exts_classmap': [{}, 'Map of extension name to class for handling build and installation.', (7, 'extensions')], 'moduleforceunload': [False, 'Force unload of all modules when loading the extension', (8, 'modules')], 'dependencies': [[], 'List of dependencies', (5, 'dependencies')], 'moduleclass': ['bio', 'Module class to be used for this software', (8, 'modules')], 'key': [None, 'Key for installing software', (6, 'license')], 'toolchain': [{'version': 'dummy', 'name': 'dummy'}, 'Name and version of toolchain', (0, 'mandatory')], 'parallel': [1, 'Degree of parallelism for e.g. make (default: based on the number of cores, active cpuset and restrictions in ulimit)', (3, 'build')], 'exts_filter': [None, 'Extension filter details: template for cmd and input to cmd (templates for name, version and src).', (7, 'extensions')], 'versionprefix': ['', 'Additional prefix for software version (placed before version and toolchain name)', (3, 'build')], 'sanity_check_paths': [{'files': ['bin/%(namelower)s64Linux', 'rotabase.txt'], 'dirs': []}, "List of files and directories to check (format: {'files':<list>, 'dirs':<list>})", (3, 'build')], 'installopts': ['', 'Extra options for installation', (3, 'build')], 'onlytcmod': [False, 'Boolean/string to indicate if the toolchain should only load the environment with module (True) or also set all other variables (False) like compiler CC etc (if string: comma separated list of variables that will be ignored).', (2, 'toolchain')], 'unwanted_env_vars': [{}, "List of environment variables that shouldn't be set during build", (3, 'build')], 'name': ['FoldX', 'Name of software', (0, 'mandatory')], 'maxparallel': [None, 'Max degree of parallelism', (3, 'build')], 'preconfigopts': ['', 'Extra options pre-passed to configure.', (3, 'build')], 'sanity_check_commands': [[], "format: [(name, options)] e.g. [('gzip','-h')]. Using a non-tuple is equivalent to (name, '-h')", (3, 'build')], 'license_server_port': [None, 'Port for license server', (6, 'license')], 'dontcreateinstalldir': [False, 'Boolean to create (False) or not create (True) the install directory', (4, 'file-management')], 'cleanupoldinstall': [True, 'Boolean to remove (True) or backup (False) the previous install directory with identical name or not.', (4, 'file-management')], 'toolchainopts': [None, 'Extra options for compilers', (2, 'toolchain')], 'software_license': [None, 'Software license', (0, 'mandatory')], 'configopts': ['', 'Extra options passed to configure (default already has --prefix)', (3, 'build')], 'software_license_urls': [None, 'List of software license locations', (0, 'mandatory')]}'
 == 2014-05-18 10:34:18,652 main.easyconfig.templates DEBUG 'version found in easyconfig is 3.0-beta6'
 == 2014-05-18 10:34:18,653 main.easyconfig.templates DEBUG 'version found in easyconfig is 3.0-beta6'
 == 2014-05-18 10:34:18,653 main.easyconfig.templates DEBUG 'version found in easyconfig is 3.0-beta6'
 == 2014-05-18 10:34:18,653 main.easyconfig.templates DEBUG 'name: name, config: FoldX'
 == 2014-05-18 10:34:18,653 main.easyconfig.templates DEBUG 'name: version, config: 3.0-beta6'
 == 2014-05-18 10:34:18,653 main.easyconfig.templates DEBUG 'name: versionsuffix, config: '
 == 2014-05-18 10:34:18,654 main.easyconfig.templates DEBUG 'name: versionprefix, config: '
 == 2014-05-18 10:34:18,654 main.EB_FoldX INFO 'Running method package_step part of step package'
 == 2014-05-18 10:34:18,654 main.EB_FoldX INFO 'postprocessing...'
 == 2014-05-18 10:34:18,654 main.EB_FoldX INFO 'Starting postproc step'
 == 2014-05-18 10:34:18,655 main.easyconfig.templates DEBUG 'config: {'preinstallopts': ['', 'Extra prefix options for installation.', (3, 'build')], 'makeopts': ['', 'Extra options passed to make (default already has -j X)', (3, 'build')], 'moduleloadnoconflict': [False, "Don't check for conflicts, unload other versions instead ", (8, 'modules')], 'skip': [False, 'Skip existing software', (3, 'build')], 'cleanupoldbuild': [True, 'Boolean to remove (True) or backup (False) the previous build directory with identical name or not.', (4, 'file-management')], 'runtest': [None, 'Indicates if a test should be run after make; should specify argument after make (for e.g.,"test" for make test)', (3, 'build')], 'sources': [['%(name)s_30b6_linux64.zip'], 'List of source files', (3, 'build')], 'versionsuffix': ['', 'Additional suffix for software version (placed after toolchain name)', (3, 'build')], 'exts_defaultclass': [None, 'List of module for and name of the default extension class', (7, 'extensions')], 'keeppreviousinstall': [False, 'Boolean to keep the previous installation with identical name. Experts only!', (4, 'file-management')], 'checksums': [[], 'Checksums for sources and patches', (3, 'build')], 'skipsteps': [[], 'Skip these steps', (3, 'build')], 'parsed': [True, 'This is a parsed easyconfig', 'HIDDEN'], 'builddependencies': [[], 'List of build dependencies', (5, 'dependencies')], 'modextravars': [{}, 'Extra environment variables to be added to module file', (8, 'modules')], 'unpack_options': [None, 'Extra options for unpacking source', (3, 'build')], 'group': [None, 'Name of the user group for which the software should be available', (6, 'license')], 'patches': [[], 'List of patches to apply', (3, 'build')], 'easyblock': ['ConfigureMake', 'EasyBlock to use for building', (3, 'build')], 'easybuild_version': [None, 'EasyBuild-version this spec-file was written for', (3, 'build')], 'keepsymlinks': [False, 'Boolean to determine whether symlinks are to be kept during copying or if the content of the files pointed to should be copied', (4, 'file-management')], 'start_dir': ['/tmp/vsc40023/easybuild_build/FoldX/3.0-beta6/dummy-dummy/FoldX_30b6_linux64/', 'Path to start the make in. If the path is absolute, use that path. If not, this is added to the guessed path.', (4, 'file-management')], 'version': ['3.0-beta6', 'Version of software', (0, 'mandatory')], 'buildininstalldir': [False, 'Boolean to build (True) or not build (False) in the installation directory', (4, 'file-management')], 'allow_system_deps': [[], 'Allow listed system dependencies (format: (<name>, <version>))', (5, 'dependencies')], 'osdependencies': [[], 'OS dependencies that should be present on the system', (5, 'dependencies')], 'buildstats': [None, 'A list of dicts with build statistics', (9, 'other')], 'homepage': ['http://http://foldx.crg.es/', 'The homepage of the software', (0, 'mandatory')], 'premakeopts': ['', 'Extra options pre-passed to build command.', (3, 'build')], 'license_file': [None, 'License file for software', (6, 'license')], 'tests': [[], 'List of test-scripts to run after install. A test script should return a non-zero exit status to fail', (3, 'build')], 'license_server': [None, 'License server for software', (6, 'license')], 'description': ['FoldX is used to provide a fast and quantitative estimation of the importance of the interactions\n contributing to the stability of proteins and protein complexes.', 'A short description of the software', (0, 'mandatory')], 'modextrapaths': [{}, 'Extra paths to be prepended in module file', (8, 'modules')], 'exts_list': [[], 'List with extensions added to the base installation', (7, 'extensions')], 'docurls': [None, 'List of urls with documentation of the software (not necessarily on homepage)', (0, 'mandatory')], 'stop': [None, 'Keyword to halt the build process after a certain step.', (3, 'build')], 'source_urls': [[], 'List of URLs for source files', (3, 'build')], 'exts_classmap': [{}, 'Map of extension name to class for handling build and installation.', (7, 'extensions')], 'moduleforceunload': [False, 'Force unload of all modules when loading the extension', (8, 'modules')], 'dependencies': [[], 'List of dependencies', (5, 'dependencies')], 'moduleclass': ['bio', 'Module class to be used for this software', (8, 'modules')], 'key': [None, 'Key for installing software', (6, 'license')], 'toolchain': [{'version': 'dummy', 'name': 'dummy'}, 'Name and version of toolchain', (0, 'mandatory')], 'parallel': [1, 'Degree of parallelism for e.g. make (default: based on the number of cores, active cpuset and restrictions in ulimit)', (3, 'build')], 'exts_filter': [None, 'Extension filter details: template for cmd and input to cmd (templates for name, version and src).', (7, 'extensions')], 'versionprefix': ['', 'Additional prefix for software version (placed before version and toolchain name)', (3, 'build')], 'sanity_check_paths': [{'files': ['bin/%(namelower)s64Linux', 'rotabase.txt'], 'dirs': []}, "List of files and directories to check (format: {'files':<list>, 'dirs':<list>})", (3, 'build')], 'installopts': ['', 'Extra options for installation', (3, 'build')], 'onlytcmod': [False, 'Boolean/string to indicate if the toolchain should only load the environment with module (True) or also set all other variables (False) like compiler CC etc (if string: comma separated list of variables that will be ignored).', (2, 'toolchain')], 'unwanted_env_vars': [{}, "List of environment variables that shouldn't be set during build", (3, 'build')], 'name': ['FoldX', 'Name of software', (0, 'mandatory')], 'maxparallel': [None, 'Max degree of parallelism', (3, 'build')], 'preconfigopts': ['', 'Extra options pre-passed to configure.', (3, 'build')], 'sanity_check_commands': [[], "format: [(name, options)] e.g. [('gzip','-h')]. Using a non-tuple is equivalent to (name, '-h')", (3, 'build')], 'license_server_port': [None, 'Port for license server', (6, 'license')], 'dontcreateinstalldir': [False, 'Boolean to create (False) or not create (True) the install directory', (4, 'file-management')], 'cleanupoldinstall': [True, 'Boolean to remove (True) or backup (False) the previous install directory with identical name or not.', (4, 'file-management')], 'toolchainopts': [None, 'Extra options for compilers', (2, 'toolchain')], 'software_license': [None, 'Software license', (0, 'mandatory')], 'configopts': ['', 'Extra options passed to configure (default already has --prefix)', (3, 'build')], 'software_license_urls': [None, 'List of software license locations', (0, 'mandatory')]}'
 == 2014-05-18 10:34:18,656 main.easyconfig.templates DEBUG 'version found in easyconfig is 3.0-beta6'
 == 2014-05-18 10:34:18,656 main.easyconfig.templates DEBUG 'version found in easyconfig is 3.0-beta6'
 == 2014-05-18 10:34:18,657 main.easyconfig.templates DEBUG 'version found in easyconfig is 3.0-beta6'
 == 2014-05-18 10:34:18,657 main.easyconfig.templates DEBUG 'name: name, config: FoldX'
 == 2014-05-18 10:34:18,657 main.easyconfig.templates DEBUG 'name: version, config: 3.0-beta6'
 == 2014-05-18 10:34:18,657 main.easyconfig.templates DEBUG 'name: versionsuffix, config: '
 == 2014-05-18 10:34:18,657 main.easyconfig.templates DEBUG 'name: versionprefix, config: '
 == 2014-05-18 10:34:18,658 main.easyconfig.templates DEBUG 'config: {'preinstallopts': ['', 'Extra prefix options for installation.', (3, 'build')], 'makeopts': ['', 'Extra options passed to make (default already has -j X)', (3, 'build')], 'moduleloadnoconflict': [False, "Don't check for conflicts, unload other versions instead ", (8, 'modules')], 'skip': [False, 'Skip existing software', (3, 'build')], 'cleanupoldbuild': [True, 'Boolean to remove (True) or backup (False) the previous build directory with identical name or not.', (4, 'file-management')], 'runtest': [None, 'Indicates if a test should be run after make; should specify argument after make (for e.g.,"test" for make test)', (3, 'build')], 'sources': [['%(name)s_30b6_linux64.zip'], 'List of source files', (3, 'build')], 'versionsuffix': ['', 'Additional suffix for software version (placed after toolchain name)', (3, 'build')], 'exts_defaultclass': [None, 'List of module for and name of the default extension class', (7, 'extensions')], 'keeppreviousinstall': [False, 'Boolean to keep the previous installation with identical name. Experts only!', (4, 'file-management')], 'checksums': [[], 'Checksums for sources and patches', (3, 'build')], 'skipsteps': [[], 'Skip these steps', (3, 'build')], 'parsed': [True, 'This is a parsed easyconfig', 'HIDDEN'], 'builddependencies': [[], 'List of build dependencies', (5, 'dependencies')], 'modextravars': [{}, 'Extra environment variables to be added to module file', (8, 'modules')], 'unpack_options': [None, 'Extra options for unpacking source', (3, 'build')], 'group': [None, 'Name of the user group for which the software should be available', (6, 'license')], 'patches': [[], 'List of patches to apply', (3, 'build')], 'easyblock': ['ConfigureMake', 'EasyBlock to use for building', (3, 'build')], 'easybuild_version': [None, 'EasyBuild-version this spec-file was written for', (3, 'build')], 'keepsymlinks': [False, 'Boolean to determine whether symlinks are to be kept during copying or if the content of the files pointed to should be copied', (4, 'file-management')], 'start_dir': ['/tmp/vsc40023/easybuild_build/FoldX/3.0-beta6/dummy-dummy/FoldX_30b6_linux64/', 'Path to start the make in. If the path is absolute, use that path. If not, this is added to the guessed path.', (4, 'file-management')], 'version': ['3.0-beta6', 'Version of software', (0, 'mandatory')], 'buildininstalldir': [False, 'Boolean to build (True) or not build (False) in the installation directory', (4, 'file-management')], 'allow_system_deps': [[], 'Allow listed system dependencies (format: (<name>, <version>))', (5, 'dependencies')], 'osdependencies': [[], 'OS dependencies that should be present on the system', (5, 'dependencies')], 'buildstats': [None, 'A list of dicts with build statistics', (9, 'other')], 'homepage': ['http://http://foldx.crg.es/', 'The homepage of the software', (0, 'mandatory')], 'premakeopts': ['', 'Extra options pre-passed to build command.', (3, 'build')], 'license_file': [None, 'License file for software', (6, 'license')], 'tests': [[], 'List of test-scripts to run after install. A test script should return a non-zero exit status to fail', (3, 'build')], 'license_server': [None, 'License server for software', (6, 'license')], 'description': ['FoldX is used to provide a fast and quantitative estimation of the importance of the interactions\n contributing to the stability of proteins and protein complexes.', 'A short description of the software', (0, 'mandatory')], 'modextrapaths': [{}, 'Extra paths to be prepended in module file', (8, 'modules')], 'exts_list': [[], 'List with extensions added to the base installation', (7, 'extensions')], 'docurls': [None, 'List of urls with documentation of the software (not necessarily on homepage)', (0, 'mandatory')], 'stop': [None, 'Keyword to halt the build process after a certain step.', (3, 'build')], 'source_urls': [[], 'List of URLs for source files', (3, 'build')], 'exts_classmap': [{}, 'Map of extension name to class for handling build and installation.', (7, 'extensions')], 'moduleforceunload': [False, 'Force unload of all modules when loading the extension', (8, 'modules')], 'dependencies': [[], 'List of dependencies', (5, 'dependencies')], 'moduleclass': ['bio', 'Module class to be used for this software', (8, 'modules')], 'key': [None, 'Key for installing software', (6, 'license')], 'toolchain': [{'version': 'dummy', 'name': 'dummy'}, 'Name and version of toolchain', (0, 'mandatory')], 'parallel': [1, 'Degree of parallelism for e.g. make (default: based on the number of cores, active cpuset and restrictions in ulimit)', (3, 'build')], 'exts_filter': [None, 'Extension filter details: template for cmd and input to cmd (templates for name, version and src).', (7, 'extensions')], 'versionprefix': ['', 'Additional prefix for software version (placed before version and toolchain name)', (3, 'build')], 'sanity_check_paths': [{'files': ['bin/%(namelower)s64Linux', 'rotabase.txt'], 'dirs': []}, "List of files and directories to check (format: {'files':<list>, 'dirs':<list>})", (3, 'build')], 'installopts': ['', 'Extra options for installation', (3, 'build')], 'onlytcmod': [False, 'Boolean/string to indicate if the toolchain should only load the environment with module (True) or also set all other variables (False) like compiler CC etc (if string: comma separated list of variables that will be ignored).', (2, 'toolchain')], 'unwanted_env_vars': [{}, "List of environment variables that shouldn't be set during build", (3, 'build')], 'name': ['FoldX', 'Name of software', (0, 'mandatory')], 'maxparallel': [None, 'Max degree of parallelism', (3, 'build')], 'preconfigopts': ['', 'Extra options pre-passed to configure.', (3, 'build')], 'sanity_check_commands': [[], "format: [(name, options)] e.g. [('gzip','-h')]. Using a non-tuple is equivalent to (name, '-h')", (3, 'build')], 'license_server_port': [None, 'Port for license server', (6, 'license')], 'dontcreateinstalldir': [False, 'Boolean to create (False) or not create (True) the install directory', (4, 'file-management')], 'cleanupoldinstall': [True, 'Boolean to remove (True) or backup (False) the previous install directory with identical name or not.', (4, 'file-management')], 'toolchainopts': [None, 'Extra options for compilers', (2, 'toolchain')], 'software_license': [None, 'Software license', (0, 'mandatory')], 'configopts': ['', 'Extra options passed to configure (default already has --prefix)', (3, 'build')], 'software_license_urls': [None, 'List of software license locations', (0, 'mandatory')]}'
 == 2014-05-18 10:34:18,659 main.easyconfig.templates DEBUG 'version found in easyconfig is 3.0-beta6'
 == 2014-05-18 10:34:18,659 main.easyconfig.templates DEBUG 'version found in easyconfig is 3.0-beta6'
 == 2014-05-18 10:34:18,660 main.easyconfig.templates DEBUG 'version found in easyconfig is 3.0-beta6'
 == 2014-05-18 10:34:18,660 main.easyconfig.templates DEBUG 'name: name, config: FoldX'
 == 2014-05-18 10:34:18,660 main.easyconfig.templates DEBUG 'name: version, config: 3.0-beta6'
 == 2014-05-18 10:34:18,660 main.easyconfig.templates DEBUG 'name: versionsuffix, config: '
 == 2014-05-18 10:34:18,660 main.easyconfig.templates DEBUG 'name: versionprefix, config: '
 == 2014-05-18 10:34:18,661 main.EB_FoldX INFO 'Running method post_install_step part of step postproc'
 == 2014-05-18 10:34:18,661 main.filetools INFO 'Adjusting permissions recursively for /user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/FoldX/3.0-beta6'
 == 2014-05-18 10:34:18,661 main.EB_FoldX INFO 'Successfully removed write permissions recursively for group/other on install dir.'
 == 2014-05-18 10:34:18,662 main.EB_FoldX INFO 'sanity checking...'
 == 2014-05-18 10:34:18,662 main.EB_FoldX INFO 'Starting sanitycheck step'
 == 2014-05-18 10:34:18,662 main.easyconfig.templates DEBUG 'config: {'preinstallopts': ['', 'Extra prefix options for installation.', (3, 'build')], 'makeopts': ['', 'Extra options passed to make (default already has -j X)', (3, 'build')], 'moduleloadnoconflict': [False, "Don't check for conflicts, unload other versions instead ", (8, 'modules')], 'skip': [False, 'Skip existing software', (3, 'build')], 'cleanupoldbuild': [True, 'Boolean to remove (True) or backup (False) the previous build directory with identical name or not.', (4, 'file-management')], 'runtest': [None, 'Indicates if a test should be run after make; should specify argument after make (for e.g.,"test" for make test)', (3, 'build')], 'sources': [['%(name)s_30b6_linux64.zip'], 'List of source files', (3, 'build')], 'versionsuffix': ['', 'Additional suffix for software version (placed after toolchain name)', (3, 'build')], 'exts_defaultclass': [None, 'List of module for and name of the default extension class', (7, 'extensions')], 'keeppreviousinstall': [False, 'Boolean to keep the previous installation with identical name. Experts only!', (4, 'file-management')], 'checksums': [[], 'Checksums for sources and patches', (3, 'build')], 'skipsteps': [[], 'Skip these steps', (3, 'build')], 'parsed': [True, 'This is a parsed easyconfig', 'HIDDEN'], 'builddependencies': [[], 'List of build dependencies', (5, 'dependencies')], 'modextravars': [{}, 'Extra environment variables to be added to module file', (8, 'modules')], 'unpack_options': [None, 'Extra options for unpacking source', (3, 'build')], 'group': [None, 'Name of the user group for which the software should be available', (6, 'license')], 'patches': [[], 'List of patches to apply', (3, 'build')], 'easyblock': ['ConfigureMake', 'EasyBlock to use for building', (3, 'build')], 'easybuild_version': [None, 'EasyBuild-version this spec-file was written for', (3, 'build')], 'keepsymlinks': [False, 'Boolean to determine whether symlinks are to be kept during copying or if the content of the files pointed to should be copied', (4, 'file-management')], 'start_dir': ['/tmp/vsc40023/easybuild_build/FoldX/3.0-beta6/dummy-dummy/FoldX_30b6_linux64/', 'Path to start the make in. If the path is absolute, use that path. If not, this is added to the guessed path.', (4, 'file-management')], 'version': ['3.0-beta6', 'Version of software', (0, 'mandatory')], 'buildininstalldir': [False, 'Boolean to build (True) or not build (False) in the installation directory', (4, 'file-management')], 'allow_system_deps': [[], 'Allow listed system dependencies (format: (<name>, <version>))', (5, 'dependencies')], 'osdependencies': [[], 'OS dependencies that should be present on the system', (5, 'dependencies')], 'buildstats': [None, 'A list of dicts with build statistics', (9, 'other')], 'homepage': ['http://http://foldx.crg.es/', 'The homepage of the software', (0, 'mandatory')], 'premakeopts': ['', 'Extra options pre-passed to build command.', (3, 'build')], 'license_file': [None, 'License file for software', (6, 'license')], 'tests': [[], 'List of test-scripts to run after install. A test script should return a non-zero exit status to fail', (3, 'build')], 'license_server': [None, 'License server for software', (6, 'license')], 'description': ['FoldX is used to provide a fast and quantitative estimation of the importance of the interactions\n contributing to the stability of proteins and protein complexes.', 'A short description of the software', (0, 'mandatory')], 'modextrapaths': [{}, 'Extra paths to be prepended in module file', (8, 'modules')], 'exts_list': [[], 'List with extensions added to the base installation', (7, 'extensions')], 'docurls': [None, 'List of urls with documentation of the software (not necessarily on homepage)', (0, 'mandatory')], 'stop': [None, 'Keyword to halt the build process after a certain step.', (3, 'build')], 'source_urls': [[], 'List of URLs for source files', (3, 'build')], 'exts_classmap': [{}, 'Map of extension name to class for handling build and installation.', (7, 'extensions')], 'moduleforceunload': [False, 'Force unload of all modules when loading the extension', (8, 'modules')], 'dependencies': [[], 'List of dependencies', (5, 'dependencies')], 'moduleclass': ['bio', 'Module class to be used for this software', (8, 'modules')], 'key': [None, 'Key for installing software', (6, 'license')], 'toolchain': [{'version': 'dummy', 'name': 'dummy'}, 'Name and version of toolchain', (0, 'mandatory')], 'parallel': [1, 'Degree of parallelism for e.g. make (default: based on the number of cores, active cpuset and restrictions in ulimit)', (3, 'build')], 'exts_filter': [None, 'Extension filter details: template for cmd and input to cmd (templates for name, version and src).', (7, 'extensions')], 'versionprefix': ['', 'Additional prefix for software version (placed before version and toolchain name)', (3, 'build')], 'sanity_check_paths': [{'files': ['bin/%(namelower)s64Linux', 'rotabase.txt'], 'dirs': []}, "List of files and directories to check (format: {'files':<list>, 'dirs':<list>})", (3, 'build')], 'installopts': ['', 'Extra options for installation', (3, 'build')], 'onlytcmod': [False, 'Boolean/string to indicate if the toolchain should only load the environment with module (True) or also set all other variables (False) like compiler CC etc (if string: comma separated list of variables that will be ignored).', (2, 'toolchain')], 'unwanted_env_vars': [{}, "List of environment variables that shouldn't be set during build", (3, 'build')], 'name': ['FoldX', 'Name of software', (0, 'mandatory')], 'maxparallel': [None, 'Max degree of parallelism', (3, 'build')], 'preconfigopts': ['', 'Extra options pre-passed to configure.', (3, 'build')], 'sanity_check_commands': [[], "format: [(name, options)] e.g. [('gzip','-h')]. Using a non-tuple is equivalent to (name, '-h')", (3, 'build')], 'license_server_port': [None, 'Port for license server', (6, 'license')], 'dontcreateinstalldir': [False, 'Boolean to create (False) or not create (True) the install directory', (4, 'file-management')], 'cleanupoldinstall': [True, 'Boolean to remove (True) or backup (False) the previous install directory with identical name or not.', (4, 'file-management')], 'toolchainopts': [None, 'Extra options for compilers', (2, 'toolchain')], 'software_license': [None, 'Software license', (0, 'mandatory')], 'configopts': ['', 'Extra options passed to configure (default already has --prefix)', (3, 'build')], 'software_license_urls': [None, 'List of software license locations', (0, 'mandatory')]}'
 == 2014-05-18 10:34:18,664 main.easyconfig.templates DEBUG 'version found in easyconfig is 3.0-beta6'
 == 2014-05-18 10:34:18,664 main.easyconfig.templates DEBUG 'version found in easyconfig is 3.0-beta6'
 == 2014-05-18 10:34:18,664 main.easyconfig.templates DEBUG 'version found in easyconfig is 3.0-beta6'
 == 2014-05-18 10:34:18,664 main.easyconfig.templates DEBUG 'name: name, config: FoldX'
 == 2014-05-18 10:34:18,664 main.easyconfig.templates DEBUG 'name: version, config: 3.0-beta6'
 == 2014-05-18 10:34:18,665 main.easyconfig.templates DEBUG 'name: versionsuffix, config: '
 == 2014-05-18 10:34:18,665 main.easyconfig.templates DEBUG 'name: versionprefix, config: '
 == 2014-05-18 10:34:18,666 main.easyconfig.templates DEBUG 'config: {'preinstallopts': ['', 'Extra prefix options for installation.', (3, 'build')], 'makeopts': ['', 'Extra options passed to make (default already has -j X)', (3, 'build')], 'moduleloadnoconflict': [False, "Don't check for conflicts, unload other versions instead ", (8, 'modules')], 'skip': [False, 'Skip existing software', (3, 'build')], 'cleanupoldbuild': [True, 'Boolean to remove (True) or backup (False) the previous build directory with identical name or not.', (4, 'file-management')], 'runtest': [None, 'Indicates if a test should be run after make; should specify argument after make (for e.g.,"test" for make test)', (3, 'build')], 'sources': [['%(name)s_30b6_linux64.zip'], 'List of source files', (3, 'build')], 'versionsuffix': ['', 'Additional suffix for software version (placed after toolchain name)', (3, 'build')], 'exts_defaultclass': [None, 'List of module for and name of the default extension class', (7, 'extensions')], 'keeppreviousinstall': [False, 'Boolean to keep the previous installation with identical name. Experts only!', (4, 'file-management')], 'checksums': [[], 'Checksums for sources and patches', (3, 'build')], 'skipsteps': [[], 'Skip these steps', (3, 'build')], 'parsed': [True, 'This is a parsed easyconfig', 'HIDDEN'], 'builddependencies': [[], 'List of build dependencies', (5, 'dependencies')], 'modextravars': [{}, 'Extra environment variables to be added to module file', (8, 'modules')], 'unpack_options': [None, 'Extra options for unpacking source', (3, 'build')], 'group': [None, 'Name of the user group for which the software should be available', (6, 'license')], 'patches': [[], 'List of patches to apply', (3, 'build')], 'easyblock': ['ConfigureMake', 'EasyBlock to use for building', (3, 'build')], 'easybuild_version': [None, 'EasyBuild-version this spec-file was written for', (3, 'build')], 'keepsymlinks': [False, 'Boolean to determine whether symlinks are to be kept during copying or if the content of the files pointed to should be copied', (4, 'file-management')], 'start_dir': ['/tmp/vsc40023/easybuild_build/FoldX/3.0-beta6/dummy-dummy/FoldX_30b6_linux64/', 'Path to start the make in. If the path is absolute, use that path. If not, this is added to the guessed path.', (4, 'file-management')], 'version': ['3.0-beta6', 'Version of software', (0, 'mandatory')], 'buildininstalldir': [False, 'Boolean to build (True) or not build (False) in the installation directory', (4, 'file-management')], 'allow_system_deps': [[], 'Allow listed system dependencies (format: (<name>, <version>))', (5, 'dependencies')], 'osdependencies': [[], 'OS dependencies that should be present on the system', (5, 'dependencies')], 'buildstats': [None, 'A list of dicts with build statistics', (9, 'other')], 'homepage': ['http://http://foldx.crg.es/', 'The homepage of the software', (0, 'mandatory')], 'premakeopts': ['', 'Extra options pre-passed to build command.', (3, 'build')], 'license_file': [None, 'License file for software', (6, 'license')], 'tests': [[], 'List of test-scripts to run after install. A test script should return a non-zero exit status to fail', (3, 'build')], 'license_server': [None, 'License server for software', (6, 'license')], 'description': ['FoldX is used to provide a fast and quantitative estimation of the importance of the interactions\n contributing to the stability of proteins and protein complexes.', 'A short description of the software', (0, 'mandatory')], 'modextrapaths': [{}, 'Extra paths to be prepended in module file', (8, 'modules')], 'exts_list': [[], 'List with extensions added to the base installation', (7, 'extensions')], 'docurls': [None, 'List of urls with documentation of the software (not necessarily on homepage)', (0, 'mandatory')], 'stop': [None, 'Keyword to halt the build process after a certain step.', (3, 'build')], 'source_urls': [[], 'List of URLs for source files', (3, 'build')], 'exts_classmap': [{}, 'Map of extension name to class for handling build and installation.', (7, 'extensions')], 'moduleforceunload': [False, 'Force unload of all modules when loading the extension', (8, 'modules')], 'dependencies': [[], 'List of dependencies', (5, 'dependencies')], 'moduleclass': ['bio', 'Module class to be used for this software', (8, 'modules')], 'key': [None, 'Key for installing software', (6, 'license')], 'toolchain': [{'version': 'dummy', 'name': 'dummy'}, 'Name and version of toolchain', (0, 'mandatory')], 'parallel': [1, 'Degree of parallelism for e.g. make (default: based on the number of cores, active cpuset and restrictions in ulimit)', (3, 'build')], 'exts_filter': [None, 'Extension filter details: template for cmd and input to cmd (templates for name, version and src).', (7, 'extensions')], 'versionprefix': ['', 'Additional prefix for software version (placed before version and toolchain name)', (3, 'build')], 'sanity_check_paths': [{'files': ['bin/%(namelower)s64Linux', 'rotabase.txt'], 'dirs': []}, "List of files and directories to check (format: {'files':<list>, 'dirs':<list>})", (3, 'build')], 'installopts': ['', 'Extra options for installation', (3, 'build')], 'onlytcmod': [False, 'Boolean/string to indicate if the toolchain should only load the environment with module (True) or also set all other variables (False) like compiler CC etc (if string: comma separated list of variables that will be ignored).', (2, 'toolchain')], 'unwanted_env_vars': [{}, "List of environment variables that shouldn't be set during build", (3, 'build')], 'name': ['FoldX', 'Name of software', (0, 'mandatory')], 'maxparallel': [None, 'Max degree of parallelism', (3, 'build')], 'preconfigopts': ['', 'Extra options pre-passed to configure.', (3, 'build')], 'sanity_check_commands': [[], "format: [(name, options)] e.g. [('gzip','-h')]. Using a non-tuple is equivalent to (name, '-h')", (3, 'build')], 'license_server_port': [None, 'Port for license server', (6, 'license')], 'dontcreateinstalldir': [False, 'Boolean to create (False) or not create (True) the install directory', (4, 'file-management')], 'cleanupoldinstall': [True, 'Boolean to remove (True) or backup (False) the previous install directory with identical name or not.', (4, 'file-management')], 'toolchainopts': [None, 'Extra options for compilers', (2, 'toolchain')], 'software_license': [None, 'Software license', (0, 'mandatory')], 'configopts': ['', 'Extra options passed to configure (default already has --prefix)', (3, 'build')], 'software_license_urls': [None, 'List of software license locations', (0, 'mandatory')]}'
 == 2014-05-18 10:34:18,667 main.easyconfig.templates DEBUG 'version found in easyconfig is 3.0-beta6'
 == 2014-05-18 10:34:18,667 main.easyconfig.templates DEBUG 'version found in easyconfig is 3.0-beta6'
 == 2014-05-18 10:34:18,667 main.easyconfig.templates DEBUG 'version found in easyconfig is 3.0-beta6'
 == 2014-05-18 10:34:18,667 main.easyconfig.templates DEBUG 'name: name, config: FoldX'
 == 2014-05-18 10:34:18,667 main.easyconfig.templates DEBUG 'name: version, config: 3.0-beta6'
 == 2014-05-18 10:34:18,668 main.easyconfig.templates DEBUG 'name: versionsuffix, config: '
 == 2014-05-18 10:34:18,668 main.easyconfig.templates DEBUG 'name: versionprefix, config: '
 == 2014-05-18 10:34:18,668 main.EB_FoldX INFO 'Running method sanity_check_step part of step sanitycheck'
 == 2014-05-18 10:34:18,668 main.EB_FoldX INFO "Using specified sanity check paths: {'files': ['bin/foldx64Linux', 'rotabase.txt'], 'dirs': []}"
 == 2014-05-18 10:34:18,669 main.EB_FoldX DEBUG 'Could not find file bin/foldx64Linux in /user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/FoldX/3.0-beta6'
 == 2014-05-18 10:34:18,669 main.EB_FoldX WARNING "Sanity check: no file of ('bin/foldx64Linux',) in /user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/FoldX/3.0-beta6"
 == 2014-05-18 10:34:18,669 main.EB_FoldX DEBUG 'Sanity check: found file rotabase.txt in /user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/FoldX/3.0-beta6'
 == 2014-05-18 10:34:18,669 main.module_generator DEBUG 'Updating fake for this ModuleGenerator instance to True (was True)'
 == 2014-05-18 10:34:18,670 main.module_generator DEBUG 'Fake mode: using /local/12892[852].master16.delcatty.gent.vsc/easybuild-LvEba2/tmpgk9t9N (instead of /user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/modules)'
 == 2014-05-18 10:34:18,670 main.module_generator DEBUG 'Determining module name for <easybuild.framework.easyconfig.easyconfig.EasyConfig object at 0x126acd0> (eb_ns: False)'
 == 2014-05-18 10:34:18,670 main.module_generator DEBUG "List of available module naming schemes: ['EasyBuildModuleNamingScheme']"
 == 2014-05-18 10:34:18,672 main.module_generator DEBUG 'Module name FoldX/3.0-beta6 validated'
 == 2014-05-18 10:34:18,672 main.module_generator DEBUG 'Obtained module name FoldX/3.0-beta6'
 == 2014-05-18 10:34:18,672 main.module_generator DEBUG 'Determining module name for <easybuild.framework.easyconfig.easyconfig.EasyConfig object at 0x126acd0> (eb_ns: False)'
 == 2014-05-18 10:34:18,672 main.module_generator DEBUG "List of available module naming schemes: ['EasyBuildModuleNamingScheme']"
 == 2014-05-18 10:34:18,674 main.module_generator DEBUG 'Module name FoldX/3.0-beta6 validated'
 == 2014-05-18 10:34:18,674 main.module_generator DEBUG 'Obtained module name FoldX/3.0-beta6'
 == 2014-05-18 10:34:18,674 main.filetools INFO 'Creating directory /local/12892[852].master16.delcatty.gent.vsc/easybuild-LvEba2/tmpgk9t9N/all/FoldX (parents: True, set_gid: False, sticky: False)'
 == 2014-05-18 10:34:18,675 main.filetools INFO 'Creating directory /local/12892[852].master16.delcatty.gent.vsc/easybuild-LvEba2/tmpgk9t9N/bio/FoldX (parents: True, set_gid: False, sticky: False)'
 == 2014-05-18 10:34:18,676 main.module_generator DEBUG 'Determining module name for <easybuild.framework.easyconfig.easyconfig.EasyConfig object at 0x126acd0> (eb_ns: False)'
 == 2014-05-18 10:34:18,676 main.module_generator DEBUG "List of available module naming schemes: ['EasyBuildModuleNamingScheme']"
 == 2014-05-18 10:34:18,677 main.module_generator DEBUG 'Module name FoldX/3.0-beta6 validated'
 == 2014-05-18 10:34:18,678 main.module_generator DEBUG 'Obtained module name FoldX/3.0-beta6'
 == 2014-05-18 10:34:18,678 main.EB_FoldX DEBUG 'make_module_extra added this: \nsetenv\tEBROOTFOLDX\t\t"$root"\nsetenv\tEBVERSIONFOLDX\t\t"3.0-beta6"\nsetenv\tEBDEVELFOLDX\t\t"$root/easybuild/FoldX-3.0-beta6-easybuild-devel"\n\n'
 == 2014-05-18 10:34:18,678 main.filetools DEBUG 'Not creating existing path /local/12892[852].master16.delcatty.gent.vsc/easybuild-LvEba2/tmpgk9t9N/all/FoldX'
 == 2014-05-18 10:34:18,678 main.EB_FoldX INFO 'Added modulefile: /local/12892[852].master16.delcatty.gent.vsc/easybuild-LvEba2/tmpgk9t9N/all/FoldX/3.0-beta6'
 == 2014-05-18 10:34:18,679 main.module_generator DEBUG 'Updating fake for this ModuleGenerator instance to True (was True)'
 == 2014-05-18 10:34:18,679 main.EB_FoldX DEBUG "mod_paths: ['/local/12892[852].master16.delcatty.gent.vsc/easybuild-LvEba2/tmpgk9t9N/all', '/user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/modules/all', '/etc/modulefiles/vsc']"
 == 2014-05-18 10:34:18,680 main.EnvironmentModulesC INFO '$MODULEPATH set based on list of module paths: /local/12892[852].master16.delcatty.gent.vsc/easybuild-LvEba2/tmpgk9t9N/all:/user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/modules/all:/etc/modulefiles/vsc'
 == 2014-05-18 10:34:18,680 main.EnvironmentModulesC DEBUG 'Using command modulecmd'
 == 2014-05-18 10:34:18,681 main.filetools INFO 'Command modulecmd found at /usr/bin/modulecmd'
 == 2014-05-18 10:34:18,681 main.EnvironmentModulesC INFO 'Full path for module command is /usr/bin/modulecmd, so using it'
 == 2014-05-18 10:34:18,681 main.run DEBUG 'run_cmd: running cmd type module (in /tmp/vsc40023/easybuild_build/FoldX/3.0-beta6/dummy-dummy/FoldX_30b6_linux64)'
 == 2014-05-18 10:34:18,704 main.run DEBUG 'cmd "type module" exited with exitcode 0 and output:\nmodule is a function\nmodule () \n{ \n    eval `/usr/bin/modulecmd bash $*`\n}\n'
 == 2014-05-18 10:34:18,705 main.run DEBUG 'Using default regular expression: (?<![(,-]|\\w)(?:error|segmentation fault|failed)(?![(,-]|\\.?\\w)'
 == 2014-05-18 10:34:18,705 main.EnvironmentModulesC DEBUG "Found pattern '.*modulecmd' in defined 'module' function."
 == 2014-05-18 10:34:18,705 main.EnvironmentModulesC DEBUG 'Current MODULEPATH: /local/12892[852].master16.delcatty.gent.vsc/easybuild-LvEba2/tmpgk9t9N/all:/user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/modules/all:/etc/modulefiles/vsc'
 == 2014-05-18 10:34:18,705 main.EnvironmentModulesC DEBUG "Adjusted LD_LIBRARY_PATH from '' to ''"
 == 2014-05-18 10:34:18,706 main.EnvironmentModulesC DEBUG "Running module command '/usr/bin/modulecmd python --version' from /tmp/vsc40023/easybuild_build/FoldX/3.0-beta6/dummy-dummy/FoldX_30b6_linux64"
 == 2014-05-18 10:34:18,903 main.EnvironmentModulesC DEBUG 'Current MODULEPATH: /local/12892[852].master16.delcatty.gent.vsc/easybuild-LvEba2/tmpgk9t9N/all:/user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/modules/all:/etc/modulefiles/vsc'
 == 2014-05-18 10:34:18,903 main.EnvironmentModulesC DEBUG "Adjusted LD_LIBRARY_PATH from '' to ''"
 == 2014-05-18 10:34:18,904 main.EnvironmentModulesC DEBUG "Running module command '/usr/bin/modulecmd python --version' from /tmp/vsc40023/easybuild_build/FoldX/3.0-beta6/dummy-dummy/FoldX_30b6_linux64"
 == 2014-05-18 10:34:18,912 main.EnvironmentModulesC INFO 'Found version 3.2.10'
 == 2014-05-18 10:34:18,913 main.EnvironmentModulesC DEBUG 'No version requirement defined.'
 == 2014-05-18 10:34:18,913 main.EnvironmentModulesC DEBUG 'Current MODULEPATH: /local/12892[852].master16.delcatty.gent.vsc/easybuild-LvEba2/tmpgk9t9N/all:/user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/modules/all:/etc/modulefiles/vsc'
 == 2014-05-18 10:34:18,913 main.EnvironmentModulesC DEBUG "Adjusted LD_LIBRARY_PATH from '' to ''"
 == 2014-05-18 10:34:18,913 main.EnvironmentModulesC DEBUG "Running module command '/usr/bin/modulecmd python use /etc/modulefiles/vsc' from /tmp/vsc40023/easybuild_build/FoldX/3.0-beta6/dummy-dummy/FoldX_30b6_linux64"
 == 2014-05-18 10:34:19,199 main.EnvironmentModulesC DEBUG "Correcting paths in LD_LIBRARY_PATH from [''] to []"
 == 2014-05-18 10:34:19,200 main.EnvironmentModulesC DEBUG 'Current MODULEPATH: /local/12892[852].master16.delcatty.gent.vsc/easybuild-LvEba2/tmpgk9t9N/all:/user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/modules/all:/etc/modulefiles/vsc'
 == 2014-05-18 10:34:19,200 main.EnvironmentModulesC DEBUG "Adjusted LD_LIBRARY_PATH from '' to ''"
 == 2014-05-18 10:34:19,200 main.EnvironmentModulesC DEBUG "Running module command '/usr/bin/modulecmd python use /user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/modules/all' from /tmp/vsc40023/easybuild_build/FoldX/3.0-beta6/dummy-dummy/FoldX_30b6_linux64"
 == 2014-05-18 10:34:19,210 main.EnvironmentModulesC DEBUG "Correcting paths in LD_LIBRARY_PATH from [''] to []"
 == 2014-05-18 10:34:19,211 main.EnvironmentModulesC DEBUG 'Current MODULEPATH: /local/12892[852].master16.delcatty.gent.vsc/easybuild-LvEba2/tmpgk9t9N/all:/user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/modules/all:/etc/modulefiles/vsc'
 == 2014-05-18 10:34:19,211 main.EnvironmentModulesC DEBUG "Adjusted LD_LIBRARY_PATH from '' to ''"
 == 2014-05-18 10:34:19,211 main.EnvironmentModulesC DEBUG "Running module command '/usr/bin/modulecmd python use /local/12892[852].master16.delcatty.gent.vsc/easybuild-LvEba2/tmpgk9t9N/all' from /tmp/vsc40023/easybuild_build/FoldX/3.0-beta6/dummy-dummy/FoldX_30b6_linux64"
 == 2014-05-18 10:34:19,221 main.EnvironmentModulesC DEBUG "Correcting paths in LD_LIBRARY_PATH from [''] to []"
 == 2014-05-18 10:34:19,221 main.EnvironmentModulesC DEBUG 'List of loaded modules before purge: /etc/modulefiles/vsc/cluster/delcatty'
 == 2014-05-18 10:34:19,222 main.EnvironmentModulesC DEBUG 'Current MODULEPATH: /local/12892[852].master16.delcatty.gent.vsc/easybuild-LvEba2/tmpgk9t9N/all:/local/12892[852].master16.delcatty.gent.vsc/easybuild-LvEba2/tmpgk9t9N/all:/user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/modules/all:/etc/modulefiles/vsc'
 == 2014-05-18 10:34:19,222 main.EnvironmentModulesC DEBUG "Adjusted LD_LIBRARY_PATH from '' to ''"
 == 2014-05-18 10:34:19,222 main.EnvironmentModulesC DEBUG "Running module command '/usr/bin/modulecmd python purge ' from /tmp/vsc40023/easybuild_build/FoldX/3.0-beta6/dummy-dummy/FoldX_30b6_linux64"
 == 2014-05-18 10:34:19,232 main.EnvironmentModulesC DEBUG "Correcting paths in LD_LIBRARY_PATH from [''] to []"
 == 2014-05-18 10:34:19,232 main.environment DEBUG 'Key in new environment found that is not in old one: VSC_OS_LOCAL (SL6)'
 == 2014-05-18 10:34:19,233 main.environment INFO 'Environment variable VSC_OS_LOCAL set to SL6'
 == 2014-05-18 10:34:19,233 main.environment DEBUG 'Key in new environment found that is different from old one: MODULEPATH (/user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/modules/all:/etc/modulefiles/vsc)'
 == 2014-05-18 10:34:19,233 main.environment INFO 'Environment variable MODULEPATH set to /user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/modules/all:/etc/modulefiles/vsc'
 == 2014-05-18 10:34:19,233 main.environment DEBUG 'Key in new environment found that is not in old one: _LMFILES_ (/etc/modulefiles/vsc/cluster/delcatty)'
 == 2014-05-18 10:34:19,233 main.environment INFO 'Environment variable _LMFILES_ set to /etc/modulefiles/vsc/cluster/delcatty'
 == 2014-05-18 10:34:19,233 main.environment DEBUG 'Key in new environment found that is not in old one: VSC_INSTITUTE_CLUSTER (delcatty)'
 == 2014-05-18 10:34:19,234 main.environment INFO 'Environment variable VSC_INSTITUTE_CLUSTER set to delcatty'
 == 2014-05-18 10:34:19,234 main.environment DEBUG 'Key in new environment found that is not in old one: VSC_INSTITUTE_LOCAL (gent)'
 == 2014-05-18 10:34:19,234 main.environment INFO 'Environment variable VSC_INSTITUTE_LOCAL set to gent'
 == 2014-05-18 10:34:19,234 main.environment DEBUG 'Key in new environment found that is not in old one: VSC_ARCH_LOCAL (sandybridge)'
 == 2014-05-18 10:34:19,234 main.environment INFO 'Environment variable VSC_ARCH_LOCAL set to sandybridge'
 == 2014-05-18 10:34:19,235 main.environment DEBUG 'Key in new environment found that is not in old one: PBS_DEFAULT (master15.delcatty.gent.vsc)'
 == 2014-05-18 10:34:19,235 main.environment INFO 'Environment variable PBS_DEFAULT set to master15.delcatty.gent.vsc'
 == 2014-05-18 10:34:19,235 main.environment DEBUG 'Key in new environment found that is not in old one: LOADEDMODULES (cluster/delcatty)'
 == 2014-05-18 10:34:19,235 main.environment INFO 'Environment variable LOADEDMODULES set to cluster/delcatty'
 == 2014-05-18 10:34:19,235 main.EnvironmentModulesC INFO '$MODULEPATH set based on list of module paths: /local/12892[852].master16.delcatty.gent.vsc/easybuild-LvEba2/tmpgk9t9N/all:/user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/modules/all:/etc/modulefiles/vsc'
 == 2014-05-18 10:34:19,236 main.EnvironmentModulesC DEBUG 'Current MODULEPATH: /local/12892[852].master16.delcatty.gent.vsc/easybuild-LvEba2/tmpgk9t9N/all:/user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/modules/all:/etc/modulefiles/vsc'
 == 2014-05-18 10:34:19,236 main.EnvironmentModulesC DEBUG "Adjusted LD_LIBRARY_PATH from '' to ''"
 == 2014-05-18 10:34:19,236 main.EnvironmentModulesC DEBUG "Running module command '/usr/bin/modulecmd python load FoldX/3.0-beta6' from /tmp/vsc40023/easybuild_build/FoldX/3.0-beta6/dummy-dummy/FoldX_30b6_linux64"
 == 2014-05-18 10:34:19,376 main.EnvironmentModulesC DEBUG "Correcting paths in LD_LIBRARY_PATH from [''] to []"
 == 2014-05-18 10:34:19,377 main.EB_FoldX INFO 'Using specified sanity check commands: []'
 == 2014-05-18 10:34:19,380 main.EnvironmentModulesC INFO '$MODULEPATH set based on list of module paths: /local/12892[852].master16.delcatty.gent.vsc/easybuild-LvEba2/tmpgk9t9N/all:/user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/modules/all:/etc/modulefiles/vsc'
 == 2014-05-18 10:34:19,380 main.EnvironmentModulesC DEBUG 'Using command modulecmd'
 == 2014-05-18 10:34:19,380 main.filetools INFO 'Command modulecmd found at /usr/bin/modulecmd'
 == 2014-05-18 10:34:19,381 main.EnvironmentModulesC INFO 'Full path for module command is /usr/bin/modulecmd, so using it'
 == 2014-05-18 10:34:19,381 main.run DEBUG 'run_cmd: running cmd type module (in /user/scratchdelcatty/gent/gvo000/gvo00002/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/FoldX/3.0-beta6)'
 == 2014-05-18 10:34:19,404 main.run DEBUG 'cmd "type module" exited with exitcode 0 and output:\nmodule is a function\nmodule () \n{ \n    eval `/usr/bin/modulecmd bash $*`\n}\n'
 == 2014-05-18 10:34:19,405 main.run DEBUG 'Using default regular expression: (?<![(,-]|\\w)(?:error|segmentation fault|failed)(?![(,-]|\\.?\\w)'
 == 2014-05-18 10:34:19,405 main.EnvironmentModulesC DEBUG "Found pattern '.*modulecmd' in defined 'module' function."
 == 2014-05-18 10:34:19,405 main.EnvironmentModulesC DEBUG 'Current MODULEPATH: /local/12892[852].master16.delcatty.gent.vsc/easybuild-LvEba2/tmpgk9t9N/all:/user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/modules/all:/etc/modulefiles/vsc'
 == 2014-05-18 10:34:19,406 main.EnvironmentModulesC DEBUG "Adjusted LD_LIBRARY_PATH from '' to ''"
 == 2014-05-18 10:34:19,406 main.EnvironmentModulesC DEBUG "Running module command '/usr/bin/modulecmd python --version' from /user/scratchdelcatty/gent/gvo000/gvo00002/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/FoldX/3.0-beta6"
 == 2014-05-18 10:34:19,414 main.EnvironmentModulesC DEBUG 'Current MODULEPATH: /local/12892[852].master16.delcatty.gent.vsc/easybuild-LvEba2/tmpgk9t9N/all:/user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/modules/all:/etc/modulefiles/vsc'
 == 2014-05-18 10:34:19,415 main.EnvironmentModulesC DEBUG "Adjusted LD_LIBRARY_PATH from '' to ''"
 == 2014-05-18 10:34:19,415 main.EnvironmentModulesC DEBUG "Running module command '/usr/bin/modulecmd python --version' from /user/scratchdelcatty/gent/gvo000/gvo00002/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/FoldX/3.0-beta6"
 == 2014-05-18 10:34:19,423 main.EnvironmentModulesC INFO 'Found version 3.2.10'
 == 2014-05-18 10:34:19,423 main.EnvironmentModulesC DEBUG 'No version requirement defined.'
 == 2014-05-18 10:34:19,423 main.EnvironmentModulesC DEBUG 'Current MODULEPATH: /local/12892[852].master16.delcatty.gent.vsc/easybuild-LvEba2/tmpgk9t9N/all:/user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/modules/all:/etc/modulefiles/vsc'
 == 2014-05-18 10:34:19,423 main.EnvironmentModulesC DEBUG "Adjusted LD_LIBRARY_PATH from '' to ''"
 == 2014-05-18 10:34:19,424 main.EnvironmentModulesC DEBUG "Running module command '/usr/bin/modulecmd python use /etc/modulefiles/vsc' from /user/scratchdelcatty/gent/gvo000/gvo00002/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/FoldX/3.0-beta6"
 == 2014-05-18 10:34:19,431 main.EnvironmentModulesC DEBUG "Correcting paths in LD_LIBRARY_PATH from [''] to []"
 == 2014-05-18 10:34:19,432 main.EnvironmentModulesC DEBUG 'Current MODULEPATH: /local/12892[852].master16.delcatty.gent.vsc/easybuild-LvEba2/tmpgk9t9N/all:/user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/modules/all:/etc/modulefiles/vsc'
 == 2014-05-18 10:34:19,432 main.EnvironmentModulesC DEBUG "Adjusted LD_LIBRARY_PATH from '' to ''"
 == 2014-05-18 10:34:19,432 main.EnvironmentModulesC DEBUG "Running module command '/usr/bin/modulecmd python use /user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/modules/all' from /user/scratchdelcatty/gent/gvo000/gvo00002/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/FoldX/3.0-beta6"
 == 2014-05-18 10:34:19,443 main.EnvironmentModulesC DEBUG "Correcting paths in LD_LIBRARY_PATH from [''] to []"
 == 2014-05-18 10:34:19,443 main.EnvironmentModulesC DEBUG 'Current MODULEPATH: /local/12892[852].master16.delcatty.gent.vsc/easybuild-LvEba2/tmpgk9t9N/all:/user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/modules/all:/etc/modulefiles/vsc'
 == 2014-05-18 10:34:19,443 main.EnvironmentModulesC DEBUG "Adjusted LD_LIBRARY_PATH from '' to ''"
 == 2014-05-18 10:34:19,443 main.EnvironmentModulesC DEBUG "Running module command '/usr/bin/modulecmd python use /local/12892[852].master16.delcatty.gent.vsc/easybuild-LvEba2/tmpgk9t9N/all' from /user/scratchdelcatty/gent/gvo000/gvo00002/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/FoldX/3.0-beta6"
 == 2014-05-18 10:34:19,454 main.EnvironmentModulesC DEBUG "Correcting paths in LD_LIBRARY_PATH from [''] to []"
 == 2014-05-18 10:34:19,454 main.EnvironmentModulesC DEBUG 'Current MODULEPATH: /local/12892[852].master16.delcatty.gent.vsc/easybuild-LvEba2/tmpgk9t9N/all:/local/12892[852].master16.delcatty.gent.vsc/easybuild-LvEba2/tmpgk9t9N/all:/user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/modules/all:/etc/modulefiles/vsc'
 == 2014-05-18 10:34:19,454 main.EnvironmentModulesC DEBUG "Adjusted LD_LIBRARY_PATH from '' to ''"
 == 2014-05-18 10:34:19,455 main.EnvironmentModulesC DEBUG "Running module command '/usr/bin/modulecmd python unload FoldX/3.0-beta6' from /user/scratchdelcatty/gent/gvo000/gvo00002/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/FoldX/3.0-beta6"
 == 2014-05-18 10:34:19,464 main.EnvironmentModulesC DEBUG "Correcting paths in LD_LIBRARY_PATH from [''] to []"
 == 2014-05-18 10:34:19,465 main.filetools INFO 'Path /local/12892[852].master16.delcatty.gent.vsc/easybuild-LvEba2/tmpgk9t9N successfully removed.'
 == 2014-05-18 10:34:19,465 main.environment DEBUG 'Key in new environment found that is different from old one: MODULEPATH (/user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/modules/all:/etc/modulefiles/vsc)'
 == 2014-05-18 10:34:19,466 main.environment INFO 'Environment variable MODULEPATH set to /user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/modules/all:/etc/modulefiles/vsc'
 == 2014-05-18 10:34:19,466 main.EB_FoldX ERROR "EasyBuild crashed with an error (at easybuild/framework/easyblock.py:1665 in sanity_check_step): Sanity check failed: no file of ('bin/foldx64Linux',) in /user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/FoldX/3.0-beta6"
 == 2014-05-18 10:34:19,466 main.easyblock.<module> WARNING "build failed (first 300 chars): EasyBuild crashed with an error (at easybuild/framework/easyblock.py:1665 in sanity_check_step): Sanity check failed: no file of ('bin/foldx64Linux',) in /user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/FoldX/3.0-beta6"
 == 2014-05-18 10:34:19,467 main.EB_FoldX INFO 'Closing log for application name FoldX version 3.0-beta6'