elowy01

# compile
$ g++ zlib-example.cpp -lz -o zlib-example

# run
$ ./zlib-example
Uncompressed size is: 36
Uncompressed string is: Hello Hello Hello Hello Hello Hello!

----------

elowy01

# compile
$ g++ zlib-example.cpp -lz -o zlib-example

# run
$ ./zlib-example
Uncompressed size is: 36
Uncompressed string is: Hello Hello Hello Hello Hello Hello!

----------

elowy01

#Gist of the gist This is a simple example showing how htslib can be used to parse VCF/BCF files in C++. Compiling options are shown in compile_and_run.sh, this assumes that you have compiled htslib into a static library - libhts.a, post a comment if you'd like help doing that.

The program takes a VCF file and spits out chromosome, position and number_of_alleles for each record in the VCF.

This test in the Samtools repo - [https://github.com/samtools/htslib/blob/1.2.1/test/test-vcf-api.c] also has some useful examples, note you might have to switch to the master branch version of that file to keep up with the currently rapidly evolving htslib API.

#Acknowledgements

elowy01

#Gist of the gist This is a simple example showing how htslib can be used to parse VCF/BCF files in C++. Compiling options are shown in compile_and_run.sh, this assumes that you have compiled htslib into a static library - libhts.a, post a comment if you'd like help doing that.

The program takes a VCF file and spits out chromosome, position and number_of_alleles for each record in the VCF.

This test in the Samtools repo - [https://github.com/samtools/htslib/blob/1.2.1/test/test-vcf-api.c] also has some useful examples, note you might have to switch to the master branch version of that file to keep up with the currently rapidly evolving htslib API.

#Acknowledgements

elowy01

# Example extracted from : https://www.geeksforgeeks.org/python-method-overloading/
# Install the required module if needed: pip3 install multipledispatch
from multipledispatch import dispatch 
  
#passing one parameter 
@dispatch(int,int) 
def product(first,second): 
    result = first*second 
    print(result); 
  

elowy01

#. Initialize an empty dict
adict = dict()

#. Create a dictionary
dict={‘Country’:’India’,’Capital’:’New Delhi’}

#. checking key membership
if 'Country' in dict:
    print("There is a key with name 'Country'")
else :

elowy01

# assert lists equality with pytest
actual = ['bl', 'direction', 'day']
expected = ['bl', 'direction', 'day']

assert len(actual) == len(expected)
assert all([a == b for a, b in zip(actual, expected)])

print(all([a == b for a, b in zip(actual, expected)]))

>>> True

elowy01

# Altering the editor used by crontab:
export EDITOR=emacs

# Editing or generating a new crontab if it does not exist:
$ crontab -e 

# crontab that executes a command every minute
*/1 * * * * echo "hello" > out.txt

# If you want to delete cron jobs you can do it by:

elowy01

/*
* Example to see how pointer arithmetics work
* We will iterate over an array by using pointers
*/
#include <iostream> 

using namespace std; 

int main()
{

elowy01

#doing the backup of a particular table
mysqldump --host=mysql-eg-devel-1.ebi.ac.uk --port=4126 --user=ensrw --password=scr1b3d1 dbname tablename >tablename+.bak
//
#after doing a dump, you can upload the data into the DB like this:
mysql -uusername DATABASENAME -ppwd <DATABASE.sql