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fac2003/hs_err_pid24368.log

Created June 4, 2016 15:10
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java thread dump
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hs_err_pid24368.log
#
# A fatal error has been detected by the Java Runtime Environment:
#
# SIGSEGV (0xb) at pc=0x00007facf76ad324, pid=24368, tid=140382809954048
#
# JRE version: Java(TM) SE Runtime Environment (8.0_45-b14) (build 1.8.0_45-b14)
# Java VM: Java HotSpot(TM) 64-Bit Server VM (25.45-b02 mixed mode linux-amd64 compressed oops)
# Problematic frame:
# C [libnd4j.so+0x94324] functions::reduce::ReduceFunction<float>::exec(float*, int*, float*, float*, int*, int*, int)+0xc24
#
# Failed to write core dump. Core dumps have been disabled. To enable core dumping, try "ulimit -c unlimited" before starting Java again
#
# If you would like to submit a bug report, please visit:
# http://bugreport.java.com/bugreport/crash.jsp
# The crash happened outside the Java Virtual Machine in native code.
# See problematic frame for where to report the bug.
#
--------------- T H R E A D ---------------
Current thread (0x00007fad64008800): JavaThread "main" [_thread_in_native, id=24370, stack(0x00007fad6b751000,0x00007fad6b852000)]
siginfo: si_signo: 11 (SIGSEGV), si_code: 1 (SEGV_MAPERR), si_addr: 0x00007fae617fec14
Registers:
RAX=0x000000000000c350, RBX=0x00007faccffc8d14, RCX=0x0000000000000002, RDX=0x000000006460d7c0
core id : 3
RSP=0x00007fad6b850040, RBP=0x0000000000000001, RSI=0x00007faccffc8d10, RDI=0x0000000000000002
R8 =0x00007facc447a860, R9 =0x00007facc668d3d0, R10=0x00007facf78e3bb0, R11=0x00007fad6ac1bca8
R12=0x00007facbbf6bfd0, R13=0x0000000000000001, R14=0x00007faccffc8d10, R15=0x00007facc447a860
RIP=0x00007facf76ad324, EFLAGS=0x0000000000010246, CSGSFS=0x0000000000000033, ERR=0x0000000000000004
TRAPNO=0x000000000000000e
Top of Stack: (sp=0x00007fad6b850040)
0x00007fad6b850040: 00007faccffc8d10 00007fad6b67b1f0
0x00007fad6b850050: 0000000064007408 00000000000003d8
0x00007fad6b850060: 00007facc668d3d0 00007faca6a71d68
0x00007fad6b850070: 00007faccf803110 00007facbbf6bf80
0x00007fad6b850080: 00007facc447a860 00007fad64008800
0x00007fad6b850090: 0000000700000001 00007facbbf6bfd0
0x00007fad6b8500a0: 00007faccffc8d10 0000000000000000
0x00007fad6b8500b0: 0000000000000000 0000000000000000
0x00007fad6b8500c0: 0000000000000000 0000000000000000
0x00007fad6b8500d0: 0000000200000000 0000000100000000
0x00007fad6b8500e0: 00007facbbf6bfd0 00007faccffc8d10
0x00007fad6b8500f0: 0000000064000000 00007fad3b200000
0x00007fad6b850100: 0000000000000000 0000000000000000
0x00007fad6b850110: 00007fad6abbe290 00007fad6b67b1f0
0x00007fad6b850120: 0000000000000008 00007fad0000000e
0x00007fad6b850130: 00007fad6b84ffc0 0000003000000028
0x00007fad6b850140: 0000000000000020 00007fad6b8501f0
0x00007fad6b850150: 00007fad64008800 0000000000000000
0x00007fad6b850160: 00007fad64008800 00007fad6b8501e0
0x00007fad6b850170: 00007fad0000000e 00007fad3b206aa0
0x00007fad6b850180: 00007fad64008800 00007fad6a342afb
0x00007fad6b850190: 00007fad64008800 000000000066006f
0x00007fad6b8501a0: 0000000000000000 0000000000000001
0x00007fad6b8501b0: 000000076ab00240 00007fad64000020
0x00007fad6b8501c0: 0000000000000008 0000000000000008
0x00007fad6b8501d0: 0000000000000008 00007fad64000020
0x00007fad6b8501e0: 0000000000000020 00007facbbf6bfd0
0x00007fad6b8501f0: 0000000000000001 00007faccffc8d10
0x00007fad6b850200: 00007facc447a860 00007fad6acc9870
0x00007fad6b850210: 0000000700000004 00007faccf803110
0x00007fad6b850220: 00007facbbf6bf80 00007facbbf6bfd0
0x00007fad6b850230: 0000000000000001 00007faccffc8d10
Instructions: (pc=0x00007facf76ad324)
0x00007facf76ad304: 00 00 00 29 08 83 c2 01 48 83 c0 04 3b 54 24 50
0x00007facf76ad314: 7c ea e9 5e f8 ff ff b8 01 00 00 00 49 63 14 24
0x00007facf76ad324: 44 8b 04 93 e9 7e f6 ff ff b8 01 00 00 00 e9 f0
0x00007facf76ad334: f9 ff ff 45 31 c0 31 d2 85 ff b8 01 00 00 00 0f
Register to memory mapping:
RAX=0x000000000000c350 is an unknown value
RBX=0x00007faccffc8d14 is an unknown value
RCX=0x0000000000000002 is an unknown value
RDX=0x000000006460d7c0 is an unknown value
RSP=0x00007fad6b850040 is pointing into the stack for thread: 0x00007fad64008800
RBP=0x0000000000000001 is an unknown value
RSI=0x00007faccffc8d10 is an unknown value
RDI=0x0000000000000002 is an unknown value
R8 =0x00007facc447a860 is an unknown value
R9 =0x00007facc668d3d0 is an unknown value
R10=0x00007facf78e3bb0: _ZTVN9functions6reduce3ops3SumIfEE+0xd0 in /tmp/javacpp61804746523439/libnd4j.so at 0x00007facf7619000
R11=0x00007fad6ac1bca8: <offset 0xf9dca8> in /home/manuele_simi/jdk1.8.0_45/jre/lib/amd64/server/libjvm.so at 0x00007fad69c7e000
R12=0x00007facbbf6bfd0 is an unknown value
R13=0x0000000000000001 is an unknown value
R14=0x00007faccffc8d10 is an unknown value
R15=0x00007facc447a860 is an unknown value
Stack: [0x00007fad6b751000,0x00007fad6b852000], sp=0x00007fad6b850040, free space=1020k
Native frames: (J=compiled Java code, j=interpreted, Vv=VM code, C=native code)
C [libnd4j.so+0x94324] functions::reduce::ReduceFunction<float>::exec(float*, int*, float*, float*, int*, int*, int)+0xc24
Java frames: (J=compiled Java code, j=interpreted, Vv=VM code)
J 3090 org.nd4j.nativeblas.NativeOps.execReduceFloat([JIJJJJJJI)V (0 bytes) @ 0x00007fad5594cab7 [0x00007fad5594ca40+0x77]
J 3314 C2 org.nd4j.linalg.cpu.nativecpu.ops.NativeOpExecutioner.exec(Lorg/nd4j/linalg/api/ops/Accumulation;[I)Lorg/nd4j/linalg/api/ndarray/INDArray; (1441 bytes) @
0x00007fad551b7508 [0x00007fad551b6bc0+0x948]
J 3326 C2 org.deeplearning4j.nn.multilayer.MultiLayerNetwork.calcBackpropGradients(Lorg/nd4j/linalg/api/ndarray/INDArray;Z)Lorg/deeplearning4j/berkeley/Pair; (648 b
ytes) @ 0x00007fad55a3b9f4 [0x00007fad55a391e0+0x2814]
J 3424 C2 org.deeplearning4j.optimize.solvers.BaseOptimizer.gradientAndScore()Lorg/deeplearning4j/berkeley/Pair; (67 bytes) @ 0x00007fad5578f104 [0x00007fad5578eea0
+0x264]
J 3502 C2 org.deeplearning4j.optimize.solvers.StochasticGradientDescent.optimize()Z (147 bytes) @ 0x00007fad55832db0 [0x00007fad55832ca0+0x110]
J 3402 C1 org.deeplearning4j.nn.multilayer.MultiLayerNetwork.fit(Lorg/nd4j/linalg/api/ndarray/INDArray;Lorg/nd4j/linalg/api/ndarray/INDArray;)V (119 bytes) @ 0x0000
7fad551ab264 [0x00007fad551aa520+0xd44]
J 3391 C1 org.deeplearning4j.nn.multilayer.MultiLayerNetwork.fit(Lorg/nd4j/linalg/dataset/api/DataSet;)V (96 bytes) @ 0x00007fad5563ef7c [0x00007fad5563ea80+0x4fc]
j org.campagnelab.dl.varanalysis.learning.DetectMutations.main([Ljava/lang/String;)V+600
v ~StubRoutines::call_stub
--------------- P R O C E S S ---------------
Java Threads: ( => current thread )
0x00007fad640d0800 JavaThread "Service Thread" daemon [_thread_blocked, id=24387, stack(0x00007fad38df8000,0x00007fad38ef9000)]
0x00007fad640c3800 JavaThread "C1 CompilerThread3" daemon [_thread_blocked, id=24386, stack(0x00007fad38ef9000,0x00007fad38ffa000)]
0x00007fad640c1800 JavaThread "C2 CompilerThread2" daemon [_thread_blocked, id=24385, stack(0x00007fad38ffa000,0x00007fad390fb000)]
0x00007fad640bf800 JavaThread "C2 CompilerThread1" daemon [_thread_blocked, id=24384, stack(0x00007fad390fb000,0x00007fad391fc000)]
0x00007fad640bc800 JavaThread "C2 CompilerThread0" daemon [_thread_blocked, id=24383, stack(0x00007fad391fc000,0x00007fad392fd000)]
0x00007fad640bb000 JavaThread "Signal Dispatcher" daemon [_thread_blocked, id=24382, stack(0x00007fad392fd000,0x00007fad393fe000)]
0x00007fad64085800 JavaThread "Finalizer" daemon [_thread_blocked, id=24381, stack(0x00007fad393fe000,0x00007fad394ff000)]
0x00007fad64083800 JavaThread "Reference Handler" daemon [_thread_blocked, id=24380, stack(0x00007fad394ff000,0x00007fad39600000)]
=>0x00007fad64008800 JavaThread "main" [_thread_in_native, id=24370, stack(0x00007fad6b751000,0x00007fad6b852000)]
Other Threads:
0x00007fad6407e800 VMThread [stack: 0x00007fad39600000,0x00007fad39701000] [id=24379]
0x00007fad640d3000 WatcherThread [stack: 0x00007fad38cf7000,0x00007fad38df8000] [id=24388]
VM state:not at safepoint (normal execution)
VM Mutex/Monitor currently owned by a thread: None
Heap:
PSYoungGen total 55296K, used 1745K [0x000000076ab00000, 0x0000000772600000, 0x00000007c0000000)
eden space 53760K, 1% used [0x000000076ab00000,0x000000076ac0c628,0x000000076df80000)
from space 1536K, 43% used [0x0000000772380000,0x0000000772428060,0x0000000772500000)
to space 1024K, 0% used [0x0000000772500000,0x0000000772500000,0x0000000772600000)
ParOldGen total 348160K, used 293276K [0x00000006c0000000, 0x00000006d5400000, 0x000000076ab00000)
object space 348160K, 84% used [0x00000006c0000000,0x00000006d1e67118,0x00000006d5400000)
Metaspace used 25012K, capacity 25419K, committed 25728K, reserved 1073152K
class space used 2766K, capacity 2885K, committed 2944K, reserved 1048576K
Card table byte_map: [0x00007fad6834b000,0x00007fad68b4c000] byte_map_base: 0x00007fad64d4b000
Marking Bits: (ParMarkBitMap*) 0x00007fad6ac1b760
Begin Bits: [0x00007fad24000000, 0x00007fad28000000)
End Bits: [0x00007fad28000000, 0x00007fad2c000000)
Polling page: 0x00007fad6b85c000
CodeCache: size=245760Kb used=9226Kb max_used=10419Kb free=236533Kb
bounds [0x00007fad55000000, 0x00007fad55a70000, 0x00007fad64000000]
total_blobs=3295 nmethods=2746 adapters=462
compilation: enabled
Compilation events (10 events):
Event: 1221.528 Thread 0x00007fad640bf800 3635 4 org.deeplearning4j.nn.multilayer.MultiLayerNetwork::setInput (86 bytes)
Event: 1221.532 Thread 0x00007fad640bf800 nmethod 3635 0x00007fad557abf50 code [0x00007fad557ac0e0, 0x00007fad557ac3a8]
Event: 1234.590 Thread 0x00007fad640c3800 3636 3 java.lang.Long::stringSize (38 bytes)
Event: 1234.590 Thread 0x00007fad640c3800 nmethod 3636 0x00007fad557fbc50 code [0x00007fad557fbdc0, 0x00007fad557fc010]
Event: 1234.590 Thread 0x00007fad640c3800 3637 3 java.lang.Long::getChars (221 bytes)
Event: 1234.591 Thread 0x00007fad640c3800 nmethod 3637 0x00007fad55367cd0 code [0x00007fad55367ea0, 0x00007fad553684f0]
Event: 1264.772 Thread 0x00007fad640c3800 3638 3 java.text.DecimalFormat::format (24 bytes)
Event: 1264.773 Thread 0x00007fad640c3800 nmethod 3638 0x00007fad555133d0 code [0x00007fad55513560, 0x00007fad55513998]
Event: 1264.773 Thread 0x00007fad640c3800 3639 ! 3 java.text.DecimalFormat::format (255 bytes)
Event: 1264.774 Thread 0x00007fad640c3800 nmethod 3639 0x00007fad556ac510 code [0x00007fad556ac6e0, 0x00007fad556ad118]
GC Heap History (10 events):
Event: 1282.626 GC heap before
{Heap before GC invocations=3481 (full 14):
PSYoungGen total 62464K, used 62144K [0x000000076ab00000, 0x0000000772800000, 0x00000007c0000000)
eden space 61440K, 100% used [0x000000076ab00000,0x000000076e700000,0x000000076e700000)
from space 1024K, 68% used [0x0000000772700000,0x00000007727b0000,0x0000000772800000)
to space 1536K, 0% used [0x0000000772500000,0x0000000772500000,0x0000000772680000)
ParOldGen total 348160K, used 293031K [0x00000006c0000000, 0x00000006d5400000, 0x000000076ab00000)
object space 348160K, 84% used [0x00000006c0000000,0x00000006d1e29e60,0x00000006d5400000)
Metaspace used 25012K, capacity 25419K, committed 25728K, reserved 1073152K
class space used 2766K, capacity 2885K, committed 2944K, reserved 1048576K
Event: 1282.628 GC heap after
Heap after GC invocations=3481 (full 14):
PSYoungGen total 60928K, used 612K [0x000000076ab00000, 0x0000000772780000, 0x00000007c0000000)
eden space 59904K, 0% used [0x000000076ab00000,0x000000076ab00000,0x000000076e580000)
from space 1024K, 59% used [0x0000000772500000,0x0000000772599218,0x0000000772600000)
to space 1536K, 0% used [0x0000000772600000,0x0000000772600000,0x0000000772780000)
ParOldGen total 348160K, used 293047K [0x00000006c0000000, 0x00000006d5400000, 0x000000076ab00000)
object space 348160K, 84% used [0x00000006c0000000,0x00000006d1e2de60,0x00000006d5400000)
Metaspace used 25012K, capacity 25419K, committed 25728K, reserved 1073152K
class space used 2766K, capacity 2885K, committed 2944K, reserved 1048576K
}
Event: 1282.919 GC heap before
{Heap before GC invocations=3482 (full 14):
PSYoungGen total 60928K, used 60516K [0x000000076ab00000, 0x0000000772780000, 0x00000007c0000000)
eden space 59904K, 100% used [0x000000076ab00000,0x000000076e580000,0x000000076e580000)
from space 1024K, 59% used [0x0000000772500000,0x0000000772599218,0x0000000772600000)
to space 1536K, 0% used [0x0000000772600000,0x0000000772600000,0x0000000772780000)
ParOldGen total 348160K, used 293047K [0x00000006c0000000, 0x00000006d5400000, 0x000000076ab00000)
object space 348160K, 84% used [0x00000006c0000000,0x00000006d1e2de60,0x00000006d5400000)
Metaspace used 25012K, capacity 25419K, committed 25728K, reserved 1073152K
class space used 2766K, capacity 2885K, committed 2944K, reserved 1048576K
Event: 1282.921 GC heap after
Heap after GC invocations=3482 (full 14):
PSYoungGen total 58880K, used 480K [0x000000076ab00000, 0x0000000772680000, 0x00000007c0000000)
eden space 58368K, 0% used [0x000000076ab00000,0x000000076ab00000,0x000000076e400000)
from space 512K, 93% used [0x0000000772600000,0x0000000772678058,0x0000000772680000)
to space 1024K, 0% used [0x0000000772480000,0x0000000772480000,0x0000000772580000)
ParOldGen total 348160K, used 293087K [0x00000006c0000000, 0x00000006d5400000, 0x000000076ab00000)
object space 348160K, 84% used [0x00000006c0000000,0x00000006d1e37e60,0x00000006d5400000)
Metaspace used 25012K, capacity 25419K, committed 25728K, reserved 1073152K
class space used 2766K, capacity 2885K, committed 2944K, reserved 1048576K
}
Event: 1283.404 GC heap before
{Heap before GC invocations=3483 (full 14):
PSYoungGen total 58880K, used 58848K [0x000000076ab00000, 0x0000000772680000, 0x00000007c0000000)
eden space 58368K, 100% used [0x000000076ab00000,0x000000076e400000,0x000000076e400000)
from space 512K, 93% used [0x0000000772600000,0x0000000772678058,0x0000000772680000)
to space 1024K, 0% used [0x0000000772480000,0x0000000772480000,0x0000000772580000)
ParOldGen total 348160K, used 293087K [0x00000006c0000000, 0x00000006d5400000, 0x000000076ab00000)
object space 348160K, 84% used [0x00000006c0000000,0x00000006d1e37e60,0x00000006d5400000)
Metaspace used 25012K, capacity 25419K, committed 25728K, reserved 1073152K
class space used 2766K, capacity 2885K, committed 2944K, reserved 1048576K
Event: 1283.407 GC heap after
Heap after GC invocations=3483 (full 14):
PSYoungGen total 57856K, used 868K [0x000000076ab00000, 0x0000000772680000, 0x00000007c0000000)
eden space 56832K, 0% used [0x000000076ab00000,0x000000076ab00000,0x000000076e280000)
from space 1024K, 84% used [0x0000000772480000,0x0000000772559200,0x0000000772580000)
to space 1024K, 0% used [0x0000000772580000,0x0000000772580000,0x0000000772680000)
ParOldGen total 348160K, used 293196K [0x00000006c0000000, 0x00000006d5400000, 0x000000076ab00000)
object space 348160K, 84% used [0x00000006c0000000,0x00000006d1e53118,0x00000006d5400000)
Metaspace used 25012K, capacity 25419K, committed 25728K, reserved 1073152K
class space used 2766K, capacity 2885K, committed 2944K, reserved 1048576K
}
Event: 1283.903 GC heap before
{Heap before GC invocations=3484 (full 14):
PSYoungGen total 57856K, used 57700K [0x000000076ab00000, 0x0000000772680000, 0x00000007c0000000)
eden space 56832K, 100% used [0x000000076ab00000,0x000000076e280000,0x000000076e280000)
from space 1024K, 84% used [0x0000000772480000,0x0000000772559200,0x0000000772580000)
to space 1024K, 0% used [0x0000000772580000,0x0000000772580000,0x0000000772680000)
ParOldGen total 348160K, used 293196K [0x00000006c0000000, 0x00000006d5400000, 0x000000076ab00000)
object space 348160K, 84% used [0x00000006c0000000,0x00000006d1e53118,0x00000006d5400000)
Metaspace used 25012K, capacity 25419K, committed 25728K, reserved 1073152K
class space used 2766K, capacity 2885K, committed 2944K, reserved 1048576K
Event: 1283.906 GC heap after
Heap after GC invocations=3484 (full 14):
PSYoungGen total 56320K, used 608K [0x000000076ab00000, 0x0000000772680000, 0x00000007c0000000)
eden space 55296K, 0% used [0x000000076ab00000,0x000000076ab00000,0x000000076e100000)
from space 1024K, 59% used [0x0000000772580000,0x0000000772618000,0x0000000772680000)
to space 1536K, 0% used [0x0000000772380000,0x0000000772380000,0x0000000772500000)
ParOldGen total 348160K, used 293236K [0x00000006c0000000, 0x00000006d5400000, 0x000000076ab00000)
object space 348160K, 84% used [0x00000006c0000000,0x00000006d1e5d118,0x00000006d5400000)
Metaspace used 25012K, capacity 25419K, committed 25728K, reserved 1073152K
class space used 2766K, capacity 2885K, committed 2944K, reserved 1048576K
}
Event: 1284.273 GC heap before
{Heap before GC invocations=3485 (full 14):
PSYoungGen total 56320K, used 55904K [0x000000076ab00000, 0x0000000772680000, 0x00000007c0000000)
eden space 55296K, 100% used [0x000000076ab00000,0x000000076e100000,0x000000076e100000)
from space 1024K, 59% used [0x0000000772580000,0x0000000772618000,0x0000000772680000)
to space 1536K, 0% used [0x0000000772380000,0x0000000772380000,0x0000000772500000)
ParOldGen total 348160K, used 293236K [0x00000006c0000000, 0x00000006d5400000, 0x000000076ab00000)
object space 348160K, 84% used [0x00000006c0000000,0x00000006d1e5d118,0x00000006d5400000)
Metaspace used 25012K, capacity 25419K, committed 25728K, reserved 1073152K
class space used 2766K, capacity 2885K, committed 2944K, reserved 1048576K
Event: 1284.275 GC heap after
Heap after GC invocations=3485 (full 14):
PSYoungGen total 55296K, used 672K [0x000000076ab00000, 0x0000000772600000, 0x00000007c0000000)
eden space 53760K, 0% used [0x000000076ab00000,0x000000076ab00000,0x000000076df80000)
from space 1536K, 43% used [0x0000000772380000,0x0000000772428060,0x0000000772500000)
to space 1024K, 0% used [0x0000000772500000,0x0000000772500000,0x0000000772600000)
ParOldGen total 348160K, used 293276K [0x00000006c0000000, 0x00000006d5400000, 0x000000076ab00000)
object space 348160K, 84% used [0x00000006c0000000,0x00000006d1e67118,0x00000006d5400000)
Metaspace used 25012K, capacity 25419K, committed 25728K, reserved 1073152K
class space used 2766K, capacity 2885K, committed 2944K, reserved 1048576K
}
Deoptimization events (10 events):
Event: 966.012 Thread 0x00007fad64008800 Uncommon trap: reason=bimorphic action=maybe_recompile pc=0x00007fad55a16028 method=java.util.Collections$SynchronizedColle
ction.iterator()Ljava/util/Iterator; @ 4
Event: 966.014 Thread 0x00007facb867a800 Uncommon trap: reason=class_check action=maybe_recompile pc=0x00007fad5554b640 method=org.apache.parquet.bytes.BytesUtils.r
eadIntLittleEndian(Ljava/io/InputStream;)I @ 1
Event: 966.015 Thread 0x00007facb867a800 Uncommon trap: reason=class_check action=maybe_recompile pc=0x00007fad553a9cac method=org.apache.parquet.format.Util.read(L
java/io/InputStream;Lparquet/org/apache/thrift/TBase;)Lparquet/org/apache/thrift/TBase; @ 5
Event: 966.016 Thread 0x00007facb867a800 Uncommon trap: reason=class_check action=maybe_recompile pc=0x00007fad556418c8 method=java.util.Collections$UnmodifiableCol
lection$1.<init>(Ljava/util/Collections$UnmodifiableCollection;)V @ 17
Event: 966.016 Thread 0x00007facb867a800 Uncommon trap: reason=class_check action=maybe_recompile pc=0x00007fad556418c8 method=java.util.Collections$UnmodifiableCol
lection$1.<init>(Ljava/util/Collections$UnmodifiableCollection;)V @ 17
Event: 966.016 Thread 0x00007facb867a800 Uncommon trap: reason=class_check action=maybe_recompile pc=0x00007fad556418c8 method=java.util.Collections$UnmodifiableCol
lection$1.<init>(Ljava/util/Collections$UnmodifiableCollection;)V @ 17
Event: 966.016 Thread 0x00007facb867a800 Uncommon trap: reason=class_check action=maybe_recompile pc=0x00007fad556418c8 method=java.util.Collections$UnmodifiableCol
lection$1.<init>(Ljava/util/Collections$UnmodifiableCollection;)V @ 17
Event: 1173.946 Thread 0x00007fad64008800 Uncommon trap: reason=bimorphic action=maybe_recompile pc=0x00007fad55a16028 method=java.util.Collections$SynchronizedColl
ection.iterator()Ljava/util/Iterator; @ 4
Event: 1173.949 Thread 0x00007facb867a800 Uncommon trap: reason=class_check action=maybe_recompile pc=0x00007fad5554b640 method=org.apache.parquet.bytes.BytesUtils.
readIntLittleEndian(Ljava/io/InputStream;)I @ 1
Event: 1173.949 Thread 0x00007facb867a800 Uncommon trap: reason=class_check action=maybe_recompile pc=0x00007fad553a9cac method=org.apache.parquet.format.Util.read(
Ljava/io/InputStream;Lparquet/org/apache/thrift/TBase;)Lparquet/org/apache/thrift/TBase; @ 5
Internal exceptions (10 events):
Event: 63.853 Thread 0x00007fad64008800 Implicit null exception at 0x00007fad5555a574 to 0x00007fad5555a5cd
Event: 208.780 Thread 0x00007fad64008800 Exception <a 'java/lang/NoSuchMethodError': org.slf4j.impl.StaticMDCBinder.getSingleton()Lorg/slf4j/impl/StaticMDCBinder;>
(0x0000000771e51990) thrown at [/RE-WORK/workspace/8-2-build-linux-amd64/jdk8u45/3457/hotspot/src/share/vm/interpreter/linkResolver.
Event: 208.911 Thread 0x00007fad64008800 Exception <a 'java/lang/NoSuchFieldError': method resolution failed> (0x000000077431d580) thrown at [/RE-WORK/workspace/8-2
-build-linux-amd64/jdk8u45/3457/hotspot/src/share/vm/prims/methodHandles.cpp, line 1125]
Event: 208.913 Thread 0x00007fad64008800 Exception <a 'java/lang/NoSuchFieldError': method resolution failed> (0x000000077432beb0) thrown at [/RE-WORK/workspace/8-2
-build-linux-amd64/jdk8u45/3457/hotspot/src/share/vm/prims/methodHandles.cpp, line 1125]
Event: 210.989 Thread 0x00007fad64008800 Exception <a 'java/lang/NoSuchMethodError': <clinit>> (0x00000007744b29d0) thrown at [/RE-WORK/workspace/8-2-build-linux-am
d64/jdk8u45/3457/hotspot/src/share/vm/prims/jni.cpp, line 1598]
Event: 210.990 Thread 0x00007fad64008800 Exception <a 'java/lang/NoSuchMethodError': <clinit>> (0x00000007744bb2e0) thrown at [/RE-WORK/workspace/8-2-build-linux-am
d64/jdk8u45/3457/hotspot/src/share/vm/prims/jni.cpp, line 1598]
Event: 210.991 Thread 0x00007fad64008800 Exception <a 'java/lang/NoSuchMethodError': <clinit>> (0x00000007744c6480) thrown at [/RE-WORK/workspace/8-2-build-linux-am
d64/jdk8u45/3457/hotspot/src/share/vm/prims/jni.cpp, line 1598]
Event: 210.992 Thread 0x00007fad64008800 Exception <a 'java/lang/NoSuchMethodError': <clinit>> (0x00000007744c93b0) thrown at [/RE-WORK/workspace/8-2-build-linux-am
d64/jdk8u45/3457/hotspot/src/share/vm/prims/jni.cpp, line 1598]
Event: 210.994 Thread 0x00007fad64008800 Exception <a 'java/lang/NoSuchMethodError': <clinit>> (0x00000007744e9698) thrown at [/RE-WORK/workspace/8-2-build-linux-am
d64/jdk8u45/3457/hotspot/src/share/vm/prims/jni.cpp, line 1598]
Event: 966.003 Thread 0x00007fad64008800 Implicit null exception at 0x00007fad557ca500 to 0x00007fad557cb591
Events (10 events):
Event: 1282.626 Executing VM operation: ParallelGCFailedAllocation
Event: 1282.629 Executing VM operation: ParallelGCFailedAllocation done
Event: 1282.919 Executing VM operation: ParallelGCFailedAllocation
Event: 1282.921 Executing VM operation: ParallelGCFailedAllocation done
Event: 1283.404 Executing VM operation: ParallelGCFailedAllocation
Event: 1283.407 Executing VM operation: ParallelGCFailedAllocation done
Event: 1283.903 Executing VM operation: ParallelGCFailedAllocation
Event: 1283.906 Executing VM operation: ParallelGCFailedAllocation done
Event: 1284.273 Executing VM operation: ParallelGCFailedAllocation
Event: 1284.275 Executing VM operation: ParallelGCFailedAllocation done
Dynamic libraries:
00400000-00401000 r-xp 00000000 08:01 53066342 /home/manuele_simi/jdk1.8.0_45/bin/java
00600000-00601000 rw-p 00000000 08:01 53066342 /home/manuele_simi/jdk1.8.0_45/bin/java
01416000-01439000 rw-p 00000000 00:00 0 [heap]
6c0000000-6d5400000 rw-p 00000000 00:00 0
6d5400000-76ab00000 ---p 00000000 00:00 0
76ab00000-772600000 rw-p 00000000 00:00 0
772600000-7c0000000 ---p 00000000 00:00 0
7c0000000-7c02e0000 rw-p 00000000 00:00 0
7c02e0000-800000000 ---p 00000000 00:00 0
7fac84000000-7fac84021000 rw-p 00000000 00:00 0
7fac84021000-7fac88000000 ---p 00000000 00:00 0
7fac8c000000-7fac8ff52000 rw-p 00000000 00:00 0
7fac8ff52000-7fac90000000 ---p 00000000 00:00 0
7fac94000000-7fac97fc5000 rw-p 00000000 00:00 0
7fac97fc5000-7fac98000000 ---p 00000000 00:00 0
7fac98000000-7fac9bfb8000 rw-p 00000000 00:00 0
7fac9bfb8000-7fac9c000000 ---p 00000000 00:00 0
7fac9c000000-7fac9ffeb000 rw-p 00000000 00:00 0
7fac9ffeb000-7faca0000000 ---p 00000000 00:00 0
7faca4000000-7faca7f7c000 rw-p 00000000 00:00 0
7faca7f7c000-7faca8000000 ---p 00000000 00:00 0
7faca8000000-7facabf73000 rw-p 00000000 00:00 0
7facabf73000-7facac000000 ---p 00000000 00:00 0
7facac000000-7facaffed000 rw-p 00000000 00:00 0
7facaffed000-7facb0000000 ---p 00000000 00:00 0
7facb0000000-7facb3fb6000 rw-p 00000000 00:00 0
7facb3fb6000-7facb4000000 ---p 00000000 00:00 0
7facb4000000-7facb7f88000 rw-p 00000000 00:00 0
7facb7f88000-7facb8000000 ---p 00000000 00:00 0
7facb8000000-7facbbf6c000 rw-p 00000000 00:00 0
7facbbf6c000-7facbc000000 ---p 00000000 00:00 0
7facbc000000-7facbffd4000 rw-p 00000000 00:00 0
7facbffd4000-7facc0000000 ---p 00000000 00:00 0
7facc0000000-7facc3f16000 rw-p 00000000 00:00 0
7facc3f16000-7facc4000000 ---p 00000000 00:00 0
7facc4000000-7facc7f6d000 rw-p 00000000 00:00 0
7facc7f6d000-7facc8000000 ---p 00000000 00:00 0
7facc8000000-7faccbf28000 rw-p 00000000 00:00 0
7faccbf28000-7faccc000000 ---p 00000000 00:00 0
7faccc000000-7faccffec000 rw-p 00000000 00:00 0
7faccffec000-7facd0000000 ---p 00000000 00:00 0
7facd0000000-7facd3f8c000 rw-p 00000000 00:00 0
7facd3f8c000-7facd4000000 ---p 00000000 00:00 0
7facd4000000-7facd4021000 rw-p 00000000 00:00 0
7facd4021000-7facd8000000 ---p 00000000 00:00 0
7facd8000000-7facd8021000 rw-p 00000000 00:00 0
7facd8021000-7facdc000000 ---p 00000000 00:00 0
7facdc000000-7facdc021000 rw-p 00000000 00:00 0
7facdc021000-7face0000000 ---p 00000000 00:00 0
7face0000000-7face0021000 rw-p 00000000 00:00 0
7face0021000-7face4000000 ---p 00000000 00:00 0
7face4000000-7face4021000 rw-p 00000000 00:00 0
7face4021000-7face8000000 ---p 00000000 00:00 0
7face8000000-7face8021000 rw-p 00000000 00:00 0
7face8021000-7facec000000 ---p 00000000 00:00 0
7facecdfe000-7facece3e000 rw-p 00000000 00:00 0
7facece3e000-7facecffe000 ---p 00000000 00:00 0
7facecffe000-7faceeffe000 rw-p 00000000 00:00 0
7faceeffe000-7faceefff000 ---p 00000000 00:00 0
7faceefff000-7facef7ff000 rw-p 00000000 00:00 0 [stack:24472]
7facef7ff000-7facef800000 ---p 00000000 00:00 0
7facef800000-7facf0000000 rw-p 00000000 00:00 0 [stack:24471]
7facf0000000-7facf0110000 rw-p 00000000 00:00 0
7facf0110000-7facf4000000 ---p 00000000 00:00 0
7facf406d000-7facf426d000 rw-p 00000000 00:00 0
7facf426d000-7facf426e000 ---p 00000000 00:00 0
7facf426e000-7facf4a6e000 rw-p 00000000 00:00 0 [stack:24470]
7facf4a6e000-7facf4a6f000 ---p 00000000 00:00 0
7facf4a6f000-7facf526f000 rw-p 00000000 00:00 0 [stack:24469]
7facf526f000-7facf5270000 ---p 00000000 00:00 0
7facf5270000-7facf5a70000 rw-p 00000000 00:00 0 [stack:24468]
7facf5a70000-7facf5a71000 ---p 00000000 00:00 0
7facf5a71000-7facf6271000 rw-p 00000000 00:00 0 [stack:24467]
7facf6271000-7facf6272000 ---p 00000000 00:00 0
7facf6272000-7facf6c72000 rw-p 00000000 00:00 0 [stack:24466]
7facf6c72000-7facf6e72000 rw-p 00000000 00:00 0
7facf6e72000-7facf7072000 rw-p 00000000 00:00 0
7facf7072000-7facf7096000 r-xp 00000000 08:01 117462191 /tmp/javacpp61804746523439/libjnind4j.so
7facf7096000-7facf7295000 ---p 00024000 08:01 117462191 /tmp/javacpp61804746523439/libjnind4j.so
7facf7295000-7facf7296000 r--p 00023000 08:01 117462191 /tmp/javacpp61804746523439/libjnind4j.so
7facf7296000-7facf7297000 rw-p 00024000 08:01 117462191 /tmp/javacpp61804746523439/libjnind4j.so
7facf7297000-7facf7409000 r-xp 00000000 08:01 16854358 /usr/lib64/libstdc++.so.6.0.21
7facf7409000-7facf7609000 ---p 00172000 08:01 16854358 /usr/lib64/libstdc++.so.6.0.21
7facf7609000-7facf7613000 r--p 00172000 08:01 16854358 /usr/lib64/libstdc++.so.6.0.21
7facf7613000-7facf7615000 rw-p 0017c000 08:01 16854358 /usr/lib64/libstdc++.so.6.0.21
7facf7615000-7facf7619000 rw-p 00000000 00:00 0
7facf7619000-7facf76d7000 r-xp 00000000 08:01 117462190 /tmp/javacpp61804746523439/libnd4j.so
7facf76d7000-7facf78d6000 ---p 000be000 08:01 117462190 /tmp/javacpp61804746523439/libnd4j.so
7facf78d6000-7facf78e8000 r--p 000bd000 08:01 117462190 /tmp/javacpp61804746523439/libnd4j.so
7facf78e8000-7facf78e9000 rw-p 000cf000 08:01 117462190 /tmp/javacpp61804746523439/libnd4j.so
7facf78e9000-7facf7941000 r-xp 00000000 08:01 117462189 /tmp/javacpp61804746523439/libblas.so.3
7facf7941000-7facf7b40000 ---p 00058000 08:01 117462189 /tmp/javacpp61804746523439/libblas.so.3
7facf7b40000-7facf7b41000 r--p 00057000 08:01 117462189 /tmp/javacpp61804746523439/libblas.so.3
7facf7b41000-7facf7b42000 rw-p 00058000 08:01 117462189 /tmp/javacpp61804746523439/libblas.so.3
7facf7b42000-7facf7dfb000 r-xp 00000000 08:01 117462188 /tmp/javacpp61804746523439/libopenblas.so
7facf7dfb000-7facf7ffa000 ---p 002b9000 08:01 117462188 /tmp/javacpp61804746523439/libopenblas.so
7facf7ffa000-7facf7ffe000 r--p 002b8000 08:01 117462188 /tmp/javacpp61804746523439/libopenblas.so
7facf7ffe000-7facf8000000 rw-p 002bc000 08:01 117462188 /tmp/javacpp61804746523439/libopenblas.so
7facf8000000-7facf8021000 rw-p 00000000 00:00 0
7facf8021000-7facfc000000 ---p 00000000 00:00 0
7facfc000000-7facfc021000 rw-p 00000000 00:00 0
7facfc021000-7fad00000000 ---p 00000000 00:00 0
7fad00000000-7fad01bc8000 rw-p 00000000 00:00 0
7fad01bc8000-7fad04000000 ---p 00000000 00:00 0
7fad04000000-7fad044ec000 rw-p 00000000 00:00 0
7fad044ec000-7fad08000000 ---p 00000000 00:00 0
7fad08000000-7fad09596000 rw-p 00000000 00:00 0
7fad09596000-7fad0c000000 ---p 00000000 00:00 0
7fad0c000000-7fad0de43000 rw-p 00000000 00:00 0
7fad0de43000-7fad10000000 ---p 00000000 00:00 0
7fad10000000-7fad10021000 rw-p 00000000 00:00 0
7fad10021000-7fad14000000 ---p 00000000 00:00 0
7fad140b1000-7fad140b4000 ---p 00000000 00:00 0
7fad140b4000-7fad141b2000 rw-p 00000000 00:00 0
7fad141b2000-7fad141c8000 r-xp 00000000 08:01 19039090 /usr/lib64/libgcc_s-5.1.1-20150618.so.1
7fad141c8000-7fad143c7000 ---p 00016000 08:01 19039090 /usr/lib64/libgcc_s-5.1.1-20150618.so.1
7fad143c7000-7fad143c8000 r--p 00015000 08:01 19039090 /usr/lib64/libgcc_s-5.1.1-20150618.so.1
7fad143c8000-7fad143c9000 rw-p 00016000 08:01 19039090 /usr/lib64/libgcc_s-5.1.1-20150618.so.1
7fad143c9000-7fad144e8000 r-xp 00000000 08:01 117462187 /tmp/javacpp61804746523439/libgfortran.so.3
7fad144e8000-7fad146e8000 ---p 0011f000 08:01 117462187 /tmp/javacpp61804746523439/libgfortran.so.3
7fad146e8000-7fad146e9000 r--p 0011f000 08:01 117462187 /tmp/javacpp61804746523439/libgfortran.so.3
7fad146e9000-7fad146eb000 rw-p 00120000 08:01 117462187 /tmp/javacpp61804746523439/libgfortran.so.3
7fad146eb000-7fad14726000 r-xp 00000000 08:01 117462186 /tmp/javacpp61804746523439/libquadmath.so.0
7fad14726000-7fad14925000 ---p 0003b000 08:01 117462186 /tmp/javacpp61804746523439/libquadmath.so.0
7fad14925000-7fad14926000 r--p 0003a000 08:01 117462186 /tmp/javacpp61804746523439/libquadmath.so.0
7fad14926000-7fad14927000 rw-p 0003b000 08:01 117462186 /tmp/javacpp61804746523439/libquadmath.so.0
7fad14927000-7fad14948000 r-xp 00000000 08:01 117462185 /tmp/javacpp61804746523439/libgomp.so.1
7fad14948000-7fad14b47000 ---p 00021000 08:01 117462185 /tmp/javacpp61804746523439/libgomp.so.1
7fad14b47000-7fad14b48000 r--p 00020000 08:01 117462185 /tmp/javacpp61804746523439/libgomp.so.1
7fad14b48000-7fad14b49000 rw-p 00021000 08:01 117462185 /tmp/javacpp61804746523439/libgomp.so.1
7fad14b49000-7fad14b86000 r-xp 00000000 08:01 2720568 /tmp/snappy-unknown-4cfc450f-31d7-4db8-a6c8-c5f5c1ed4b11-libsnappyjava.so
7fad14b86000-7fad14d86000 ---p 0003d000 08:01 2720568 /tmp/snappy-unknown-4cfc450f-31d7-4db8-a6c8-c5f5c1ed4b11-libsnappyjava.so
7fad14d86000-7fad14d89000 rw-p 0003d000 08:01 2720568 /tmp/snappy-unknown-4cfc450f-31d7-4db8-a6c8-c5f5c1ed4b11-libsnappyjava.so
7fad14d89000-7fad14f9b000 rw-p 00000000 00:00 0
7fad14f9b000-7fad1519b000 rw-p 00000000 00:00 0
7fad1519b000-7fad151ac000 r-xp 00000000 08:01 17199741 /home/manuele_simi/jdk1.8.0_45/jre/lib/amd64/libnio.so
7fad151ac000-7fad153ab000 ---p 00011000 08:01 17199741 /home/manuele_simi/jdk1.8.0_45/jre/lib/amd64/libnio.so
7fad153ab000-7fad153ac000 rw-p 00010000 08:01 17199741 /home/manuele_simi/jdk1.8.0_45/jre/lib/amd64/libnio.so
7fad153ac000-7fad155ac000 rw-p 00000000 00:00 0
7fad155ac000-7fad155af000 ---p 00000000 00:00 0
7fad155af000-7fad156ad000 rw-p 00000000 00:00 0
7fad156ad000-7fad1c000000 r--p 00000000 08:01 17577473 /usr/lib/locale/locale-archive
7fad1c000000-7fad1c021000 rw-p 00000000 00:00 0
7fad1c021000-7fad20000000 ---p 00000000 00:00 0
7fad20000000-7fad20021000 rw-p 00000000 00:00 0
7fad20021000-7fad24000000 ---p 00000000 00:00 0
7fad24000000-7fad2c000000 rw-p 00000000 00:00 0
7fad2c000000-7fad2c021000 rw-p 00000000 00:00 0
7fad2c021000-7fad30000000 ---p 00000000 00:00 0
7fad30000000-7fad30043000 rw-p 00000000 00:00 0
7fad30043000-7fad34000000 ---p 00000000 00:00 0
7fad34000000-7fad34021000 rw-p 00000000 00:00 0
7fad34021000-7fad38000000 ---p 00000000 00:00 0
7fad380fe000-7fad380ff000 r-xp 00000000 08:01 17199558 /home/manuele_simi/jdk1.8.0_45/jre/lib/amd64/libjaas_unix.so
7fad380ff000-7fad382fe000 ---p 00001000 08:01 17199558 /home/manuele_simi/jdk1.8.0_45/jre/lib/amd64/libjaas_unix.so
7fad382fe000-7fad382ff000 rw-p 00000000 08:01 17199558 /home/manuele_simi/jdk1.8.0_45/jre/lib/amd64/libjaas_unix.so
7fad382ff000-7fad38307000 r-xp 00000000 08:01 17199560 /home/manuele_simi/jdk1.8.0_45/jre/lib/amd64/libmanagement.so
7fad38307000-7fad38507000 ---p 00008000 08:01 17199560 /home/manuele_simi/jdk1.8.0_45/jre/lib/amd64/libmanagement.so
7fad38507000-7fad38508000 rw-p 00008000 08:01 17199560 /home/manuele_simi/jdk1.8.0_45/jre/lib/amd64/libmanagement.so
7fad38508000-7fad38524000 r--s 00393000 08:01 53066328 /home/manuele_simi/jdk1.8.0_45/jre/lib/ext/cldrdata.jar
7fad38524000-7fad3853a000 r-xp 00000000 08:01 17199573 /home/manuele_simi/jdk1.8.0_45/jre/lib/amd64/libnet.so
7fad3853a000-7fad3873a000 ---p 00016000 08:01 17199573 /home/manuele_simi/jdk1.8.0_45/jre/lib/amd64/libnet.so
7fad3873a000-7fad3873b000 rw-p 00016000 08:01 17199573 /home/manuele_simi/jdk1.8.0_45/jre/lib/amd64/libnet.so
7fad3873b000-7fad38800000 rw-p 00000000 00:00 0
7fad38800000-7fad38cf7000 r--s 08fee000 08:01 134226852 /home/manuele_simi/variationanalysis2/variationanalysis/target/variation-analysis-0.2.0-SNA
PSHOT-jar-with-dependencies.jar
7fad38cf7000-7fad38cf8000 ---p 00000000 00:00 0
7fad38cf8000-7fad38df8000 rw-p 00000000 00:00 0 [stack:24388]
7fad38df8000-7fad38dfb000 ---p 00000000 00:00 0
7fad38dfb000-7fad38ef9000 rw-p 00000000 00:00 0 [stack:24387]
7fad38ef9000-7fad38efc000 ---p 00000000 00:00 0
7fad38efc000-7fad38ffa000 rw-p 00000000 00:00 0 [stack:24386]
7fad38ffa000-7fad38ffd000 ---p 00000000 00:00 0
7fad38ffd000-7fad390fb000 rw-p 00000000 00:00 0 [stack:24385]
7fad390fb000-7fad390fe000 ---p 00000000 00:00 0
7fad390fe000-7fad391fc000 rw-p 00000000 00:00 0 [stack:24384]
7fad391fc000-7fad391ff000 ---p 00000000 00:00 0
7fad391ff000-7fad392fd000 rw-p 00000000 00:00 0 [stack:24383]
7fad392fd000-7fad39300000 ---p 00000000 00:00 0
7fad39300000-7fad393fe000 rw-p 00000000 00:00 0 [stack:24382]
7fad393fe000-7fad39401000 ---p 00000000 00:00 0
7fad39401000-7fad394ff000 rw-p 00000000 00:00 0 [stack:24381]
7fad394ff000-7fad39502000 ---p 00000000 00:00 0
7fad39502000-7fad39600000 rw-p 00000000 00:00 0 [stack:24380]
7fad39600000-7fad39601000 ---p 00000000 00:00 0
7fad39601000-7fad3c000000 rw-p 00000000 00:00 0 [stack:24379]
7fad3c000000-7fad3c021000 rw-p 00000000 00:00 0
7fad3c021000-7fad40000000 ---p 00000000 00:00 0
7fad40000000-7fad40021000 rw-p 00000000 00:00 0
7fad40021000-7fad44000000 ---p 00000000 00:00 0
7fad44000000-7fad44021000 rw-p 00000000 00:00 0
7fad44021000-7fad48000000 ---p 00000000 00:00 0
7fad48000000-7fad48021000 rw-p 00000000 00:00 0
7fad48021000-7fad4c000000 ---p 00000000 00:00 0
7fad4c000000-7fad4c021000 rw-p 00000000 00:00 0
7fad4c021000-7fad50000000 ---p 00000000 00:00 0
7fad50000000-7fad50021000 rw-p 00000000 00:00 0
7fad50021000-7fad54000000 ---p 00000000 00:00 0
7fad54004000-7fad54356000 rw-p 00000000 00:00 0
7fad54356000-7fad5452f000 r--s 03d09000 08:01 37116252 /home/manuele_simi/jdk1.8.0_45/jre/lib/rt.jar
7fad5452f000-7fad545a5000 rw-p 00000000 00:00 0
7fad545a5000-7fad545a6000 ---p 00000000 00:00 0
7fad545a6000-7fad546a6000 rw-p 00000000 00:00 0 [stack:24378]
7fad546a6000-7fad546a7000 ---p 00000000 00:00 0
7fad546a7000-7fad547a7000 rw-p 00000000 00:00 0 [stack:24377]
7fad547a7000-7fad547a8000 ---p 00000000 00:00 0
7fad547a8000-7fad548a8000 rw-p 00000000 00:00 0 [stack:24376]
7fad548a8000-7fad548a9000 ---p 00000000 00:00 0
7fad548a9000-7fad549a9000 rw-p 00000000 00:00 0 [stack:24375]
7fad549a9000-7fad549aa000 ---p 00000000 00:00 0
7fad549aa000-7fad54b54000 rw-p 00000000 00:00 0 [stack:24374]
7fad54b54000-7fad55000000 ---p 00000000 00:00 0
7fad55000000-7fad55a70000 rwxp 00000000 00:00 0
7fad55a70000-7fad64000000 ---p 00000000 00:00 0
7fad64000000-7fad67fe0000 rw-p 00000000 00:00 0
7fad67fe0000-7fad68000000 ---p 00000000 00:00 0
7fad68006000-7fad68048000 rw-p 00000000 00:00 0
7fad68048000-7fad68049000 ---p 00000000 00:00 0
7fad68049000-7fad68149000 rw-p 00000000 00:00 0 [stack:24373]
7fad68149000-7fad6814a000 ---p 00000000 00:00 0
7fad6814a000-7fad6824a000 rw-p 00000000 00:00 0 [stack:24372]
7fad6824a000-7fad6824b000 ---p 00000000 00:00 0
7fad6824b000-7fad683f5000 rw-p 00000000 00:00 0 [stack:24371]
7fad683f5000-7fad688a0000 ---p 00000000 00:00 0
7fad688a0000-7fad688de000 rw-p 00000000 00:00 0
7fad688de000-7fad68b4b000 ---p 00000000 00:00 0
7fad68b4b000-7fad68b76000 rw-p 00000000 00:00 0
7fad68b76000-7fad68f0c000 ---p 00000000 00:00 0
7fad68f0c000-7fad68f26000 r-xp 00000000 08:01 17199554 /home/manuele_simi/jdk1.8.0_45/jre/lib/amd64/libzip.so
7fad68f26000-7fad69126000 ---p 0001a000 08:01 17199554 /home/manuele_simi/jdk1.8.0_45/jre/lib/amd64/libzip.so
7fad69126000-7fad69127000 rw-p 0001a000 08:01 17199554 /home/manuele_simi/jdk1.8.0_45/jre/lib/amd64/libzip.so
7fad69127000-7fad69132000 r-xp 00000000 08:01 18564653 /usr/lib64/libnss_files-2.22.so
7fad69132000-7fad69331000 ---p 0000b000 08:01 18564653 /usr/lib64/libnss_files-2.22.so
7fad69331000-7fad69332000 r--p 0000a000 08:01 18564653 /usr/lib64/libnss_files-2.22.so
7fad69332000-7fad69333000 rw-p 0000b000 08:01 18564653 /usr/lib64/libnss_files-2.22.so
7fad69333000-7fad69339000 rw-p 00000000 00:00 0
7fad69339000-7fad69363000 r-xp 00000000 08:01 17199739 /home/manuele_simi/jdk1.8.0_45/jre/lib/amd64/libjava.so
7fad69363000-7fad69563000 ---p 0002a000 08:01 17199739 /home/manuele_simi/jdk1.8.0_45/jre/lib/amd64/libjava.so
7fad69563000-7fad69565000 rw-p 0002a000 08:01 17199739 /home/manuele_simi/jdk1.8.0_45/jre/lib/amd64/libjava.so
7fad69565000-7fad69572000 r-xp 00000000 08:01 17199587 /home/manuele_simi/jdk1.8.0_45/jre/lib/amd64/libverify.so
7fad69572000-7fad69772000 ---p 0000d000 08:01 17199587 /home/manuele_simi/jdk1.8.0_45/jre/lib/amd64/libverify.so
7fad69772000-7fad69774000 rw-p 0000d000 08:01 17199587 /home/manuele_simi/jdk1.8.0_45/jre/lib/amd64/libverify.so
7fad69774000-7fad6977b000 r-xp 00000000 08:01 16854983 /usr/lib64/librt-2.22.so
7fad6977b000-7fad6997a000 ---p 00007000 08:01 16854983 /usr/lib64/librt-2.22.so
7fad6997a000-7fad6997b000 r--p 00006000 08:01 16854983 /usr/lib64/librt-2.22.so
7fad6997b000-7fad6997c000 rw-p 00007000 08:01 16854983 /usr/lib64/librt-2.22.so
7fad6997c000-7fad69a7d000 r-xp 00000000 08:01 16854895 /usr/lib64/libm-2.22.so
7fad69a7d000-7fad69c7c000 ---p 00101000 08:01 16854895 /usr/lib64/libm-2.22.so
7fad69c7c000-7fad69c7d000 r--p 00100000 08:01 16854895 /usr/lib64/libm-2.22.so
7fad69c7d000-7fad69c7e000 rw-p 00101000 08:01 16854895 /usr/lib64/libm-2.22.so
7fad69c7e000-7fad6a92c000 r-xp 00000000 08:01 53066320 /home/manuele_simi/jdk1.8.0_45/jre/lib/amd64/server/libjvm.so
7fad6a92c000-7fad6ab2b000 ---p 00cae000 08:01 53066320 /home/manuele_simi/jdk1.8.0_45/jre/lib/amd64/server/libjvm.so
7fad6ab2b000-7fad6ac02000 rw-p 00cad000 08:01 53066320 /home/manuele_simi/jdk1.8.0_45/jre/lib/amd64/server/libjvm.so
7fad6ac02000-7fad6ac46000 rw-p 00000000 00:00 0
7fad6ac46000-7fad6adfd000 r-xp 00000000 08:01 19039098 /usr/lib64/libc-2.22.so
7fad6adfd000-7fad6affd000 ---p 001b7000 08:01 19039098 /usr/lib64/libc-2.22.so
7fad6affd000-7fad6b001000 r--p 001b7000 08:01 19039098 /usr/lib64/libc-2.22.so
7fad6b001000-7fad6b003000 rw-p 001bb000 08:01 19039098 /usr/lib64/libc-2.22.so
7fad6b003000-7fad6b007000 rw-p 00000000 00:00 0
7fad6b007000-7fad6b00a000 r-xp 00000000 08:01 16854101 /usr/lib64/libdl-2.22.so
7fad6b00a000-7fad6b209000 ---p 00003000 08:01 16854101 /usr/lib64/libdl-2.22.so
7fad6b209000-7fad6b20a000 r--p 00002000 08:01 16854101 /usr/lib64/libdl-2.22.so
7fad6b20a000-7fad6b20b000 rw-p 00003000 08:01 16854101 /usr/lib64/libdl-2.22.so
7fad6b20b000-7fad6b220000 r-xp 00000000 08:01 5611345 /home/manuele_simi/jdk1.8.0_45/lib/amd64/jli/libjli.so
7fad6b220000-7fad6b420000 ---p 00015000 08:01 5611345 /home/manuele_simi/jdk1.8.0_45/lib/amd64/jli/libjli.so
7fad6b420000-7fad6b421000 rw-p 00015000 08:01 5611345 /home/manuele_simi/jdk1.8.0_45/lib/amd64/jli/libjli.so
7fad6b421000-7fad6b439000 r-xp 00000000 08:01 16854979 /usr/lib64/libpthread-2.22.so
7fad6b439000-7fad6b638000 ---p 00018000 08:01 16854979 /usr/lib64/libpthread-2.22.so
7fad6b638000-7fad6b639000 r--p 00017000 08:01 16854979 /usr/lib64/libpthread-2.22.so
7fad6b639000-7fad6b63a000 rw-p 00018000 08:01 16854979 /usr/lib64/libpthread-2.22.so
7fad6b63a000-7fad6b63e000 rw-p 00000000 00:00 0
7fad6b63e000-7fad6b65f000 r-xp 00000000 08:01 19039092 /usr/lib64/ld-2.22.so
7fad6b666000-7fad6b66b000 r--s 00094000 08:01 37116250 /home/manuele_simi/jdk1.8.0_45/jre/lib/jsse.jar
7fad6b66b000-7fad6b676000 r--s 00116000 08:01 53066326 /home/manuele_simi/jdk1.8.0_45/jre/lib/ext/localedata.jar
7fad6b676000-7fad6b749000 rw-p 00000000 00:00 0
7fad6b749000-7fad6b751000 rw-s 00000000 08:01 50964318 /tmp/hsperfdata_manuele_simi/24368
7fad6b751000-7fad6b754000 ---p 00000000 00:00 0
7fad6b754000-7fad6b856000 rw-p 00000000 00:00 0 [stack:24370]
7fad6b858000-7fad6b85b000 r--s 0001a000 08:01 37116277 /home/manuele_simi/jdk1.8.0_45/jre/lib/jce.jar
7fad6b85b000-7fad6b85c000 rw-p 00000000 00:00 0
7fad6b85c000-7fad6b85d000 r--p 00000000 00:00 0
7fad6b85d000-7fad6b85e000 rw-p 00000000 00:00 0
7fad6b85e000-7fad6b85f000 r--p 00020000 08:01 19039092 /usr/lib64/ld-2.22.so
7fad6b85f000-7fad6b860000 rw-p 00021000 08:01 19039092 /usr/lib64/ld-2.22.so
7fad6b860000-7fad6b861000 rw-p 00000000 00:00 0
7fff0497a000-7fff0499b000 rw-p 00000000 00:00 0 [stack]
7fff049a5000-7fff049a7000 r-xp 00000000 00:00 0 [vdso]
ffffffffff600000-ffffffffff601000 r-xp 00000000 00:00 0 [vsyscall]
VM Arguments:
jvm_args: -Xmx4g
java_command: org.campagnelab.dl.varanalysis.learning.DetectMutations
java_class_path (initial): target/variation-analysis-0.2.0-SNAPSHOT-jar-with-dependencies.jar:config
Launcher Type: SUN_STANDARD
Environment Variables:
JAVA_HOME=/home/manuele_simi/jdk1.8.0_45
PATH=/home/manuele_simi/jdk1.8.0_45/bin:/usr/share/apache-maven-3.2.5/bin/:/usr/local/bin:/usr/bin:/usr/local/sbin:/usr/sbin:/home/manuele_simi/.local/bin:/home/man
uele_simi/bin
USERNAME=root
SHELL=/bin/bash
Signal Handlers:
SIGSEGV: [libjvm.so+0xaad1e0], sa_mask[0]=11111111011111111101111111111110, sa_flags=SA_RESTART|SA_SIGINFO
SIGBUS: [libjvm.so+0xaad1e0], sa_mask[0]=11111111011111111101111111111110, sa_flags=SA_RESTART|SA_SIGINFO
SIGFPE: [libjvm.so+0x90b450], sa_mask[0]=11111111011111111101111111111110, sa_flags=SA_RESTART|SA_SIGINFO
SIGPIPE: [libjvm.so+0x90b450], sa_mask[0]=11111111011111111101111111111110, sa_flags=SA_RESTART|SA_SIGINFO
SIGXFSZ: [libjvm.so+0x90b450], sa_mask[0]=11111111011111111101111111111110, sa_flags=SA_RESTART|SA_SIGINFO
SIGILL: [libjvm.so+0x90b450], sa_mask[0]=11111111011111111101111111111110, sa_flags=SA_RESTART|SA_SIGINFO
SIGUSR1: SIG_DFL, sa_mask[0]=00000000000000000000000000000000, sa_flags=none
SIGUSR2: [libjvm.so+0x90ca90], sa_mask[0]=00000000000000000000000000000000, sa_flags=SA_RESTART|SA_SIGINFO
SIGHUP: [libjvm.so+0x90dde0], sa_mask[0]=11111111011111111101111111111110, sa_flags=SA_RESTART|SA_SIGINFO
SIGINT: [libjvm.so+0x90dde0], sa_mask[0]=11111111011111111101111111111110, sa_flags=SA_RESTART|SA_SIGINFO
SIGTERM: [libjvm.so+0x90dde0], sa_mask[0]=11111111011111111101111111111110, sa_flags=SA_RESTART|SA_SIGINFO
SIGQUIT: [libjvm.so+0x90dde0], sa_mask[0]=11111111011111111101111111111110, sa_flags=SA_RESTART|SA_SIGINFO
--------------- S Y S T E M ---------------
OS:CentOS Linux release 7.2.1511 (Core)
uname:Linux 3.10.0-327.18.2.el7.x86_64 #1 SMP Thu May 12 11:03:55 UTC 2016 x86_64
libc:glibc 2.22 NPTL 2.22
rlimit: STACK 8192k, CORE 0k, NPROC 4096, NOFILE 4096, AS infinity
load average:4.17 3.23 3.27
/proc/meminfo:
MemTotal: 7348964 kB
MemFree: 3242360 kB
MemAvailable: 5012728 kB
Buffers: 868 kB
Cached: 1866048 kB
SwapCached: 0 kB
Active: 3409876 kB
Inactive: 281096 kB
Active(anon): 1824192 kB
Inactive(anon): 8336 kB
Active(file): 1585684 kB
Inactive(file): 272760 kB
Unevictable: 0 kB
Mlocked: 0 kB
SwapTotal: 0 kB
SwapFree: 0 kB
Dirty: 28 kB
Writeback: 0 kB
AnonPages: 1824172 kB
Mapped: 45436 kB
Shmem: 8472 kB
Slab: 197652 kB
SReclaimable: 161716 kB
SUnreclaim: 35936 kB
KernelStack: 3184 kB
PageTables: 12076 kB
NFS_Unstable: 0 kB
Bounce: 0 kB
WritebackTmp: 0 kB
CommitLimit: 3674480 kB
Committed_AS: 1141344 kB
VmallocTotal: 34359738367 kB
VmallocUsed: 17564 kB
VmallocChunk: 34359717876 kB
HardwareCorrupted: 0 kB
AnonHugePages: 1318912 kB
HugePages_Total: 0
HugePages_Free: 0
HugePages_Rsvd: 0
HugePages_Surp: 0
Hugepagesize: 2048 kB
DirectMap4k: 64500 kB
DirectMap2M: 3291136 kB
DirectMap1G: 4194304 kB
CPU:total 8 (16 cores per cpu, 2 threads per core) family 6 model 63 stepping 0, cmov, cx8, fxsr, mmx, sse, sse2, sse3, ssse3, sse4.1, sse4.2, popcnt, avx, avx2, ae
s, clmul, erms, lzcnt, ht, tsc, bmi1, bmi2
/proc/cpuinfo:
processor : 0
vendor_id : GenuineIntel
cpu family : 6
model : 63
model name : Intel(R) Xeon(R) CPU @ 2.30GHz
stepping : 0
microcode : 0x1
cpu MHz : 2299.998
cache size : 46080 KB
physical id : 0
siblings : 8
core id : 0
cpu cores : 4
apicid : 0
initial apicid : 0
fpu : yes
fpu_exception : yes
cpuid level : 13
wp : yes
flags : fpu vme de pse tsc msr pae mce cx8 apic sep mtrr pge mca cmov pat pse36 clflush mmx fxsr sse sse2 ss ht syscall nx pdpe1gb rdtscp lm constant_tsc
nopl xtopology eagerfpu pni pclmulqdq ssse3 fma cx16 sse4_1 sse4_2 x2apic movbe popcnt aes xsave avx f16c rdrand hypervisor lahf_lm abm fsgsbase bmi1 avx2 smep bmi2
xsaveopt
bogomips : 4599.99
clflush size : 64
cache_alignment : 64
address sizes : 46 bits physical, 48 bits virtual
power management:
processor : 1
vendor_id : GenuineIntel
cpu family : 6
model : 63
model name : Intel(R) Xeon(R) CPU @ 2.30GHz
stepping : 0
microcode : 0x1
cpu MHz : 2299.998
cache size : 46080 KB
physical id : 0
siblings : 8
core id : 0
cpu cores : 4
apicid : 1
initial apicid : 1
fpu : yes
fpu_exception : yes
cpuid level : 13
wp : yes
flags : fpu vme de pse tsc msr pae mce cx8 apic sep mtrr pge mca cmov pat pse36 clflush mmx fxsr sse sse2 ss ht syscall nx pdpe1gb rdtscp lm constant_tsc
nopl xtopology eagerfpu pni pclmulqdq ssse3 fma cx16 sse4_1 sse4_2 x2apic movbe popcnt aes xsave avx f16c rdrand hypervisor lahf_lm abm fsgsbase bmi1 avx2 smep bmi2
xsaveopt
bogomips : 4599.99
clflush size : 64
cache_alignment : 64
address sizes : 46 bits physical, 48 bits virtual
power management:
processor : 2
vendor_id : GenuineIntel
cpu family : 6
model : 63
model name : Intel(R) Xeon(R) CPU @ 2.30GHz
stepping : 0
microcode : 0x1
cpu MHz : 2299.998
cache size : 46080 KB
physical id : 0
siblings : 8
core id : 1
cpu cores : 4
apicid : 2
initial apicid : 2
fpu : yes
fpu_exception : yes
cpuid level : 13
wp : yes
flags : fpu vme de pse tsc msr pae mce cx8 apic sep mtrr pge mca cmov pat pse36 clflush mmx fxsr sse sse2 ss ht syscall nx pdpe1gb rdtscp lm constant_tsc
nopl xtopology eagerfpu pni pclmulqdq ssse3 fma cx16 sse4_1 sse4_2 x2apic movbe popcnt aes xsave avx f16c rdrand hypervisor lahf_lm abm fsgsbase bmi1 avx2 smep bmi2
xsaveopt
bogomips : 4599.99
clflush size : 64
cache_alignment : 64
address sizes : 46 bits physical, 48 bits virtual
power management:
processor : 3
vendor_id : GenuineIntel
cpu family : 6
model : 63
model name : Intel(R) Xeon(R) CPU @ 2.30GHz
stepping : 0
microcode : 0x1
cpu MHz : 2299.998
cache size : 46080 KB
physical id : 0
siblings : 8
core id : 1
cpu cores : 4
apicid : 3
initial apicid : 3
fpu : yes
fpu_exception : yes
cpuid level : 13
wp : yes
flags : fpu vme de pse tsc msr pae mce cx8 apic sep mtrr pge mca cmov pat pse36 clflush mmx fxsr sse sse2 ss ht syscall nx pdpe1gb rdtscp lm constant_tsc
nopl xtopology eagerfpu pni pclmulqdq ssse3 fma cx16 sse4_1 sse4_2 x2apic movbe popcnt aes xsave avx f16c rdrand hypervisor lahf_lm abm fsgsbase bmi1 avx2 smep bmi2
xsaveopt
bogomips : 4599.99
clflush size : 64
cache_alignment : 64
address sizes : 46 bits physical, 48 bits virtual
power management:
processor : 4
vendor_id : GenuineIntel
cpu family : 6
model : 63
model name : Intel(R) Xeon(R) CPU @ 2.30GHz
stepping : 0
microcode : 0x1
cpu MHz : 2299.998
cache size : 46080 KB
physical id : 0
siblings : 8
core id : 2
cpu cores : 4
apicid : 4
initial apicid : 4
fpu : yes
fpu_exception : yes
cpuid level : 13
wp : yes
flags : fpu vme de pse tsc msr pae mce cx8 apic sep mtrr pge mca cmov pat pse36 clflush mmx fxsr sse sse2 ss ht syscall nx pdpe1gb rdtscp lm constant_tsc
nopl xtopology eagerfpu pni pclmulqdq ssse3 fma cx16 sse4_1 sse4_2 x2apic movbe popcnt aes xsave avx f16c rdrand hypervisor lahf_lm abm fsgsbase bmi1 avx2 smep bmi2
xsaveopt
bogomips : 4599.99
clflush size : 64
cache_alignment : 64
address sizes : 46 bits physical, 48 bits virtual
power management:
processor : 5
vendor_id : GenuineIntel
cpu family : 6
model : 63
model name : Intel(R) Xeon(R) CPU @ 2.30GHz
stepping : 0
microcode : 0x1
cpu MHz : 2299.998
cache size : 46080 KB
physical id : 0
siblings : 8
core id : 2
cpu cores : 4
apicid : 5
initial apicid : 5
fpu : yes
fpu_exception : yes
cpuid level : 13
wp : yes
flags : fpu vme de pse tsc msr pae mce cx8 apic sep mtrr pge mca cmov pat pse36 clflush mmx fxsr sse sse2 ss ht syscall nx pdpe1gb rdtscp lm constant_tsc
nopl xtopology eagerfpu pni pclmulqdq ssse3 fma cx16 sse4_1 sse4_2 x2apic movbe popcnt aes xsave avx f16c rdrand hypervisor lahf_lm abm fsgsbase bmi1 avx2 smep bmi2
xsaveopt
bogomips : 4599.99
clflush size : 64
cache_alignment : 64
address sizes : 46 bits physical, 48 bits virtual
power management:
processor : 6
vendor_id : GenuineIntel
cpu family : 6
model : 63
model name : Intel(R) Xeon(R) CPU @ 2.30GHz
stepping : 0
microcode : 0x1
cpu MHz : 2299.998
cache size : 46080 KB
physical id : 0
siblings : 8
core id : 3
cpu cores : 4
apicid : 6
initial apicid : 6
fpu : yes
fpu_exception : yes
cpuid level : 13
wp : yes
flags : fpu vme de pse tsc msr pae mce cx8 apic sep mtrr pge mca cmov pat pse36 clflush mmx fxsr sse sse2 ss ht syscall nx pdpe1gb rdtscp lm constant_tsc
nopl xtopology eagerfpu pni pclmulqdq ssse3 fma cx16 sse4_1 sse4_2 x2apic movbe popcnt aes xsave avx f16c rdrand hypervisor lahf_lm abm fsgsbase bmi1 avx2 smep bmi2
xsaveopt
bogomips : 4599.99
clflush size : 64
cache_alignment : 64
address sizes : 46 bits physical, 48 bits virtual
power management:
processor : 7
vendor_id : GenuineIntel
cpu family : 6
model : 63
model name : Intel(R) Xeon(R) CPU @ 2.30GHz
stepping : 0
microcode : 0x1
cpu MHz : 2299.998
cache size : 46080 KB
physical id : 0
siblings : 8
core id : 3
cpu cores : 4
apicid : 7
initial apicid : 7
fpu : yes
fpu_exception : yes
cpuid level : 13
wp : yes
flags : fpu vme de pse tsc msr pae mce cx8 apic sep mtrr pge mca cmov pat pse36 clflush mmx fxsr sse sse2 ss ht syscall nx pdpe1gb rdtscp lm constant_tsc
nopl xtopology eagerfpu pni pclmulqdq ssse3 fma cx16 sse4_1 sse4_2 x2apic movbe popcnt aes xsave avx f16c rdrand hypervisor lahf_lm abm fsgsbase bmi1 avx2 smep bmi2
xsaveopt
bogomips : 4599.99
clflush size : 64
cache_alignment : 64
address sizes : 46 bits physical, 48 bits virtual
power management:
Memory: 4k page, physical 7348964k(3242360k free), swap 0k(0k free)
vm_info: Java HotSpot(TM) 64-Bit Server VM (25.45-b02) for linux-amd64 JRE (1.8.0_45-b14), built on Apr 10 2015 10:07:45 by "java_re" with gcc 4.3.0 20080428 (Red H
at 4.3.0-8)
time: Sat Jun 4 14:30:29 2016
elapsed time: 1284 seconds (0d 0h 21m 24s)
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