Skip to content

Instantly share code, notes, and snippets.

@ocaisa
Created September 21, 2015 17:12
Show Gist options
  • Save ocaisa/fb004b490fb7adf4bf97 to your computer and use it in GitHub Desktop.
Save ocaisa/fb004b490fb7adf4bf97 to your computer and use it in GitHub Desktop.
(partial) EasyBuild log for failed build of /usr/local/software/juropa3/Stage4/software/Core/EasyBuild/2.3.0/lib/python2.6/site-packages/easybuild_easyconfigs-2.3.0-py2.6.egg/easybuild/easyconfigs/o/OpenMPI/OpenMPI-1.8.4-GCC-4.8.4.eb (PR #1913)
== 2015-09-21 19:10:11,895 main.ConfigureMake INFO This is EasyBuild 2.3.0 (framework: 2.3.0, easyblocks: 2.3.0) on host j3l02.
== 2015-09-21 19:10:11,895 main.ConfigureMake INFO This is easyblock ConfigureMake from module easybuild.easyblocks.generic.configuremake (/usr/local/software/juropa3/Stage4/software/Core/EasyBuild/2.3.0/lib/python2.6/site-packages/easybuild_easyblocks-2.3.0-py2.6.egg/easybuild/easyblocks/generic/configuremake.pyc)
== 2015-09-21 19:10:11,896 main.ConfigureMake INFO Build dir set to /dev/shm/swmanage/OpenMPI/1.8.4/GCC-4.8.4
== 2015-09-21 19:10:11,896 main.ConfigureMake INFO Install dir set to /usr/local/software/juropa3/Stage4/software/Toolchain/GCC/4.8.4/OpenMPI/1.8.4
== 2015-09-21 19:10:11,896 main.ConfigureMake INFO Init completed for application name OpenMPI version 1.8.4
== 2015-09-21 19:10:11,896 main.easyblock INFO Obtained application instance of for OpenMPI (easyblock: ConfigureMake)
== 2015-09-21 19:10:11,897 main.ConfigureMake INFO building and installing Toolchain/GCC/4.8.4/OpenMPI/1.8.4...
== 2015-09-21 19:10:11,897 main.ConfigureMake INFO fetching files...
== 2015-09-21 19:10:11,897 main.ConfigureMake INFO Starting fetch step
== 2015-09-21 19:10:11,899 main.ConfigureMake INFO Running method fetch_step part of step fetch
== 2015-09-21 19:10:11,900 main.ConfigureMake WARNING Easyconfig does not specify an EasyBuild-version (key 'easybuild_version')! Assuming the latest version
== 2015-09-21 19:10:11,900 main.filetools INFO Command eb found at /usr/local/software/juropa3/Stage4/software/Core/EasyBuild/2.3.0/bin/eb
== 2015-09-21 19:10:11,914 main.ConfigureMake INFO Found file openmpi-1.8.4.tar.gz at /usr/local/software/juropa3/sources/o/OpenMPI/openmpi-1.8.4.tar.gz
== 2015-09-21 19:10:11,914 main.ConfigureMake INFO Added sources: [{'path': '/usr/local/software/juropa3/sources/o/OpenMPI/openmpi-1.8.4.tar.gz', 'cmd': None, 'finalpath': '/dev/shm/swmanage/OpenMPI/1.8.4/GCC-4.8.4', 'name': 'openmpi-1.8.4.tar.gz', 'checksum': None}]
== 2015-09-21 19:10:11,915 main.ConfigureMake INFO no patches provided
== 2015-09-21 19:10:12,032 main.ConfigureMake INFO md5 checksum for /usr/local/software/juropa3/sources/o/OpenMPI/openmpi-1.8.4.tar.gz: 5bfd54d7fa54fa84c42ae6e297efc7b6
== 2015-09-21 19:10:12,047 main.ConfigureMake INFO Setting parallelism: 32
== 2015-09-21 19:10:12,047 main.ConfigureMake INFO Checking dirs that need to be created: ['/usr/local/software/juropa3/Stage4/software/Toolchain/GCC/4.8.4/OpenMPI', '/usr/local/software/juropa3/Stage4/modules/all/Toolchain/GCC/4.8.4/OpenMPI']
== 2015-09-21 19:10:12,048 main.filetools INFO Creating directory /usr/local/software/juropa3/Stage4/software/Toolchain/GCC/4.8.4/OpenMPI (parents: True, set_gid: True, sticky: True)
== 2015-09-21 19:10:12,048 main.filetools INFO Adjusting permissions recursively for /usr/local/software/juropa3/Stage4/software/Toolchain/GCC/4.8.4/OpenMPI
== 2015-09-21 19:10:12,049 main.filetools INFO Creating directory /usr/local/software/juropa3/Stage4/modules/all/Toolchain/GCC/4.8.4/OpenMPI (parents: True, set_gid: True, sticky: True)
== 2015-09-21 19:10:12,049 main.filetools INFO Adjusting permissions recursively for /usr/local/software/juropa3/Stage4/modules/all/Toolchain/GCC/4.8.4/OpenMPI
== 2015-09-21 19:10:12,049 main.ConfigureMake INFO creating build dir, resetting environment...
== 2015-09-21 19:10:12,050 main.ConfigureMake INFO Starting ready step
== 2015-09-21 19:10:12,052 main.ConfigureMake INFO Running method check_readiness_step part of step ready
== 2015-09-21 19:10:12,141 main.ConfigureMake WARNING Loaded modules detected: ['Stages/.Stage4', 'EasyBuild/2.3.0', 'Developers/InstallSoftware', 'bzip2/1.0.6', 'zlib/1.2.8', 'libreadline/6.3', 'ncurses/5.9', 'Tcl/8.6.3', 'SQLite/3.8.8.1', 'Tk/8.6.3-no-X11', 'Python/2.7.9-bare']
== 2015-09-21 19:10:12,253 main ERROR add_dependencies: no module 'Toolchain/GCC/4.8.4/hwloc/1.10.1' found for dependency {'external_module_metadata': {}, 'dummy': False, 'toolchain': {'version': '4.8.4', 'name': 'GCC'}, 'name': 'hwloc', 'short_mod_name': 'hwloc/1.10.1', 'external_module': False, 'versionsuffix': '', 'full_mod_name': 'Toolchain/GCC/4.8.4/hwloc/1.10.1', 'version': '1.10.1', 'hidden': False} (at easybuild/tools/toolchain/toolchain.py:339 in add_dependencies)
== 2015-09-21 19:10:12,254 main.easyblock WARNING build failed (first 300 chars): add_dependencies: no module 'Toolchain/GCC/4.8.4/hwloc/1.10.1' found for dependency {'external_module_metadata': {}, 'dummy': False, 'toolchain': {'version': '4.8.4', 'name': 'GCC'}, 'name': 'hwloc', 'short_mod_name': 'hwloc/1.10.1', 'external_module': False, 'versionsuffix': '', 'full_mod_name': 'T
== 2015-09-21 19:10:12,254 main.ConfigureMake INFO Closing log for application name OpenMPI version 1.8.4
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment