(partial) EasyBuild log for failed build of /local/12893[856].master16.delcatty.gent.vsc/easybuild-dAt4g7/files_pr856/VCFtools-0.1.11-ictce-5.5.0-Perl-5.16.3.eb (PR #856)

VCFtools-0.1.11-ictce-5.5.0-Perl-5.16.3_partial.log

== 2014-05-18 11:01:45,868 main.MakeCp INFO 'This is EasyBuild 1.13.0dev (framework: 1.13.0dev, easyblocks: 1.13.0dev) on host node2157.delcatty.os.'
== 2014-05-18 11:01:45,868 main.MakeCp INFO 'Init completed for application name VCFtools version 0.1.11'
== 2014-05-18 11:01:45,868 main.easyblock.<module> INFO 'Obtained application instance of for VCFtools (easyblock: MakeCp)'
== 2014-05-18 11:01:45,868 main.easyblock.<module> DEBUG 'Skip set to False'
== 2014-05-18 11:01:45,869 main.module_generator DEBUG 'Determining module name for <easybuild.framework.easyconfig.easyconfig.EasyConfig object at 0x1278e50> (eb_ns: False)'
== 2014-05-18 11:01:45,869 main.module_generator DEBUG "List of available module naming schemes: ['EasyBuildModuleNamingScheme']"
== 2014-05-18 11:01:45,872 main.module_generator DEBUG 'Module name VCFtools/0.1.11-ictce-5.5.0-Perl-5.16.3 validated'
== 2014-05-18 11:01:45,872 main.module_generator DEBUG 'Obtained module name VCFtools/0.1.11-ictce-5.5.0-Perl-5.16.3'
== 2014-05-18 11:01:45,872 main.MakeCp INFO 'building and installing VCFtools/0.1.11-ictce-5.5.0-Perl-5.16.3...'
== 2014-05-18 11:01:45,873 main.MakeCp INFO 'fetching files...'
== 2014-05-18 11:01:45,873 main.MakeCp INFO 'Starting fetch step'
== 2014-05-18 11:01:45,874 main.easyconfig.templates DEBUG 'config: {'preinstallopts': ['', 'Extra prefix options for installation.', (3, 'build')], 'makeopts': ['', 'Extra options passed to make (default already has -j X)', (3, 'build')], 'configure_cmd_prefix': ['', 'Prefix to be glued before ./configure', (1, 'easyblock-specific')], 'moduleloadnoconflict': [False, "Don't check for conflicts, unload other versions instead ", (8, 'modules')], 'skip': [False, 'Skip existing software', (3, 'build')], 'cleanupoldbuild': [True, 'Boolean to remove (True) or backup (False) the previous build directory with identical name or not.', (4, 'file-management')], 'runtest': [None, 'Indicates if a test should be run after make; should specify argument after make (for e.g.,"test" for make test)', (3, 'build')], 'sources': [['%(namelower)s_%(version)s.tar.gz'], 'List of source files', (3, 'build')], 'versionsuffix': ['-Perl-5.16.3', 'Additional suffix for software version (placed after toolchain name)', (3, 'build')], 'exts_defaultclass': [None, 'List of module for and name of the default extension class', (7, 'extensions')], 'keeppreviousinstall': [False, 'Boolean to keep the previous installation with identical name. Experts only!', (4, 'file-management')], 'checksums': [[], 'Checksums for sources and patches', (3, 'build')], 'skipsteps': [[], 'Skip these steps', (3, 'build')], 'parsed': [True, 'This is a parsed easyconfig', 'HIDDEN'], 'builddependencies': [[], 'List of build dependencies', (5, 'dependencies')], 'modextravars': [{}, 'Extra environment variables to be added to module file', (8, 'modules')], 'unpack_options': [None, 'Extra options for unpacking source', (3, 'build')], 'group': [None, 'Name of the user group for which the software should be available', (6, 'license')], 'patches': [[], 'List of patches to apply', (3, 'build')], 'with_configure': [False, 'Run configure script before building', (3, 'build')], 'easyblock': ['MakeCp', 'EasyBlock to use for building', (3, 'build')], 'easybuild_version': [None, 'EasyBuild-version this spec-file was written for', (3, 'build')], 'keepsymlinks': [False, 'Boolean to determine whether symlinks are to be kept during copying or if the content of the files pointed to should be copied', (4, 'file-management')], 'start_dir': [None, 'Path to start the make in. If the path is absolute, use that path. If not, this is added to the guessed path.', (4, 'file-management')], 'version': ['0.1.11', 'Version of software', (0, 'mandatory')], 'buildininstalldir': [False, 'Boolean to build (True) or not build (False) in the installation directory', (4, 'file-management')], 'allow_system_deps': [[], 'Allow listed system dependencies (format: (<name>, <version>))', (5, 'dependencies')], 'osdependencies': [[], 'OS dependencies that should be present on the system', (5, 'dependencies')], 'buildstats': [None, 'A list of dicts with build statistics', (9, 'other')], 'homepage': ['http://vcftools.sourceforge.net/', 'The homepage of the software', (0, 'mandatory')], 'premakeopts': ['', 'Extra options pre-passed to build command.', (3, 'build')], 'license_file': [None, 'License file for software', (6, 'license')], 'tests': [[], 'List of test-scripts to run after install. A test script should return a non-zero exit status to fail', (3, 'build')], 'license_server': [None, 'License server for software', (6, 'license')], 'tar_config_opts': [False, 'Override tar settings as determined by configure.', (1, 'easyblock-specific')], 'description': ['The aim of VCFtools is to provide \n methods for working with VCF files: validating, \n merging, comparing and calculate some basic population\n genetic statistics. ', 'A short description of the software', (0, 'mandatory')], 'modextrapaths': [{'PERL5LIB': 'lib/perl5/site_perl'}, 'Extra paths to be prepended in module file', (8, 'modules')], 'exts_list': [[], 'List with extensions added to the base installation', (7, 'extensions')], 'docurls': [None, 'List of urls with documentation of the software (not necessarily on homepage)', (0, 'mandatory')], 'stop': [None, 'Keyword to halt the build process after a certain step.', (3, 'build')], 'source_urls': [['http://download.sourceforge.net/%(namelower)s'], 'List of URLs for source files', (3, 'build')], 'exts_classmap': [{}, 'Map of extension name to class for handling build and installation.', (7, 'extensions')], 'moduleforceunload': [False, 'Force unload of all modules when loading the extension', (8, 'modules')], 'dependencies': [[{'dummy': False, 'toolchain': {'version': '5.5.0', 'name': 'ictce'}, 'name': 'Perl', 'versionsuffix': '', 'version': '5.16.3', 'mod_name': 'Perl/5.16.3-ictce-5.5.0'}], 'List of dependencies', (5, 'dependencies')], 'moduleclass': ['bio', 'Module class to be used for this software', (8, 'modules')], 'key': [None, 'Key for installing software', (6, 'license')], 'prefix_opt': ['--prefix=', 'Prefix command line option for configure script', (1, 'easyblock-specific')], 'toolchain': [{'version': '5.5.0', 'name': 'ictce'}, 'Name and version of toolchain', (0, 'mandatory')], 'parallel': [None, 'Degree of parallelism for e.g. make (default: based on the number of cores, active cpuset and restrictions in ulimit)', (3, 'build')], 'exts_filter': [None, 'Extension filter details: template for cmd and input to cmd (templates for name, version and src).', (7, 'extensions')], 'versionprefix': ['', 'Additional prefix for software version (placed before version and toolchain name)', (3, 'build')], 'sanity_check_paths': [{'files': ['bin/vcftools', 'bin/vcf-sort', 'bin/vcf-stats'], 'dirs': []}, "List of files and directories to check (format: {'files':<list>, 'dirs':<list>})", (3, 'build')], 'installopts': ['', 'Extra options for installation', (3, 'build')], 'onlytcmod': [False, 'Boolean/string to indicate if the toolchain should only load the environment with module (True) or also set all other variables (False) like compiler CC etc (if string: comma separated list of variables that will be ignored).', (2, 'toolchain')], 'unwanted_env_vars': [[], "List of environment variables that shouldn't be set during build", (3, 'build')], 'name': ['VCFtools', 'Name of software', (0, 'mandatory')], 'maxparallel': [None, 'Max degree of parallelism', (3, 'build')], 'preconfigopts': ['', 'Extra options pre-passed to configure.', (3, 'build')], 'sanity_check_commands': [[], "format: [(name, options)] e.g. [('gzip','-h')]. Using a non-tuple is equivalent to (name, '-h')", (3, 'build')], 'license_server_port': [None, 'Port for license server', (6, 'license')], 'dontcreateinstalldir': [False, 'Boolean to create (False) or not create (True) the install directory', (4, 'file-management')], 'cleanupoldinstall': [True, 'Boolean to remove (True) or backup (False) the previous install directory with identical name or not.', (4, 'file-management')], 'toolchainopts': [{'optarch': True}, 'Extra options for compilers', (2, 'toolchain')], 'software_license': [None, 'Software license', (0, 'mandatory')], 'files_to_copy': [['bin', 'lib'], 'List of files or dirs to copy', (0, 'mandatory')], 'configopts': ['', 'Extra options passed to configure (default already has --prefix)', (3, 'build')], 'software_license_urls': [None, 'List of software license locations', (0, 'mandatory')]}'
== 2014-05-18 11:01:45,875 main.easyconfig.templates DEBUG 'version found in easyconfig is 0.1.11'
== 2014-05-18 11:01:45,875 main.easyconfig.templates DEBUG 'version found in easyconfig is 0.1.11'
== 2014-05-18 11:01:45,875 main.easyconfig.templates DEBUG 'version found in easyconfig is 0.1.11'
== 2014-05-18 11:01:45,875 main.easyconfig.templates DEBUG 'name: name, config: VCFtools'
== 2014-05-18 11:01:45,875 main.easyconfig.templates DEBUG 'name: version, config: 0.1.11'
== 2014-05-18 11:01:45,876 main.easyconfig.templates DEBUG 'name: versionsuffix, config: -Perl-5.16.3'
== 2014-05-18 11:01:45,876 main.easyconfig.templates DEBUG 'name: versionprefix, config: '
== 2014-05-18 11:01:45,877 main.easyconfig.templates DEBUG 'config: {'preinstallopts': ['', 'Extra prefix options for installation.', (3, 'build')], 'makeopts': ['', 'Extra options passed to make (default already has -j X)', (3, 'build')], 'configure_cmd_prefix': ['', 'Prefix to be glued before ./configure', (1, 'easyblock-specific')], 'moduleloadnoconflict': [False, "Don't check for conflicts, unload other versions instead ", (8, 'modules')], 'skip': [False, 'Skip existing software', (3, 'build')], 'cleanupoldbuild': [True, 'Boolean to remove (True) or backup (False) the previous build directory with identical name or not.', (4, 'file-management')], 'runtest': [None, 'Indicates if a test should be run after make; should specify argument after make (for e.g.,"test" for make test)', (3, 'build')], 'sources': [['%(namelower)s_%(version)s.tar.gz'], 'List of source files', (3, 'build')], 'versionsuffix': ['-Perl-5.16.3', 'Additional suffix for software version (placed after toolchain name)', (3, 'build')], 'exts_defaultclass': [None, 'List of module for and name of the default extension class', (7, 'extensions')], 'keeppreviousinstall': [False, 'Boolean to keep the previous installation with identical name. Experts only!', (4, 'file-management')], 'checksums': [[], 'Checksums for sources and patches', (3, 'build')], 'skipsteps': [[], 'Skip these steps', (3, 'build')], 'parsed': [True, 'This is a parsed easyconfig', 'HIDDEN'], 'builddependencies': [[], 'List of build dependencies', (5, 'dependencies')], 'modextravars': [{}, 'Extra environment variables to be added to module file', (8, 'modules')], 'unpack_options': [None, 'Extra options for unpacking source', (3, 'build')], 'group': [None, 'Name of the user group for which the software should be available', (6, 'license')], 'patches': [[], 'List of patches to apply', (3, 'build')], 'with_configure': [False, 'Run configure script before building', (3, 'build')], 'easyblock': ['MakeCp', 'EasyBlock to use for building', (3, 'build')], 'easybuild_version': [None, 'EasyBuild-version this spec-file was written for', (3, 'build')], 'keepsymlinks': [False, 'Boolean to determine whether symlinks are to be kept during copying or if the content of the files pointed to should be copied', (4, 'file-management')], 'start_dir': [None, 'Path to start the make in. If the path is absolute, use that path. If not, this is added to the guessed path.', (4, 'file-management')], 'version': ['0.1.11', 'Version of software', (0, 'mandatory')], 'buildininstalldir': [False, 'Boolean to build (True) or not build (False) in the installation directory', (4, 'file-management')], 'allow_system_deps': [[], 'Allow listed system dependencies (format: (<name>, <version>))', (5, 'dependencies')], 'osdependencies': [[], 'OS dependencies that should be present on the system', (5, 'dependencies')], 'buildstats': [None, 'A list of dicts with build statistics', (9, 'other')], 'homepage': ['http://vcftools.sourceforge.net/', 'The homepage of the software', (0, 'mandatory')], 'premakeopts': ['', 'Extra options pre-passed to build command.', (3, 'build')], 'license_file': [None, 'License file for software', (6, 'license')], 'tests': [[], 'List of test-scripts to run after install. A test script should return a non-zero exit status to fail', (3, 'build')], 'license_server': [None, 'License server for software', (6, 'license')], 'tar_config_opts': [False, 'Override tar settings as determined by configure.', (1, 'easyblock-specific')], 'description': ['The aim of VCFtools is to provide \n methods for working with VCF files: validating, \n merging, comparing and calculate some basic population\n genetic statistics. ', 'A short description of the software', (0, 'mandatory')], 'modextrapaths': [{'PERL5LIB': 'lib/perl5/site_perl'}, 'Extra paths to be prepended in module file', (8, 'modules')], 'exts_list': [[], 'List with extensions added to the base installation', (7, 'extensions')], 'docurls': [None, 'List of urls with documentation of the software (not necessarily on homepage)', (0, 'mandatory')], 'stop': [None, 'Keyword to halt the build process after a certain step.', (3, 'build')], 'source_urls': [['http://download.sourceforge.net/%(namelower)s'], 'List of URLs for source files', (3, 'build')], 'exts_classmap': [{}, 'Map of extension name to class for handling build and installation.', (7, 'extensions')], 'moduleforceunload': [False, 'Force unload of all modules when loading the extension', (8, 'modules')], 'dependencies': [[{'dummy': False, 'toolchain': {'version': '5.5.0', 'name': 'ictce'}, 'name': 'Perl', 'versionsuffix': '', 'version': '5.16.3', 'mod_name': 'Perl/5.16.3-ictce-5.5.0'}], 'List of dependencies', (5, 'dependencies')], 'moduleclass': ['bio', 'Module class to be used for this software', (8, 'modules')], 'key': [None, 'Key for installing software', (6, 'license')], 'prefix_opt': ['--prefix=', 'Prefix command line option for configure script', (1, 'easyblock-specific')], 'toolchain': [{'version': '5.5.0', 'name': 'ictce'}, 'Name and version of toolchain', (0, 'mandatory')], 'parallel': [None, 'Degree of parallelism for e.g. make (default: based on the number of cores, active cpuset and restrictions in ulimit)', (3, 'build')], 'exts_filter': [None, 'Extension filter details: template for cmd and input to cmd (templates for name, version and src).', (7, 'extensions')], 'versionprefix': ['', 'Additional prefix for software version (placed before version and toolchain name)', (3, 'build')], 'sanity_check_paths': [{'files': ['bin/vcftools', 'bin/vcf-sort', 'bin/vcf-stats'], 'dirs': []}, "List of files and directories to check (format: {'files':<list>, 'dirs':<list>})", (3, 'build')], 'installopts': ['', 'Extra options for installation', (3, 'build')], 'onlytcmod': [False, 'Boolean/string to indicate if the toolchain should only load the environment with module (True) or also set all other variables (False) like compiler CC etc (if string: comma separated list of variables that will be ignored).', (2, 'toolchain')], 'unwanted_env_vars': [[], "List of environment variables that shouldn't be set during build", (3, 'build')], 'name': ['VCFtools', 'Name of software', (0, 'mandatory')], 'maxparallel': [None, 'Max degree of parallelism', (3, 'build')], 'preconfigopts': ['', 'Extra options pre-passed to configure.', (3, 'build')], 'sanity_check_commands': [[], "format: [(name, options)] e.g. [('gzip','-h')]. Using a non-tuple is equivalent to (name, '-h')", (3, 'build')], 'license_server_port': [None, 'Port for license server', (6, 'license')], 'dontcreateinstalldir': [False, 'Boolean to create (False) or not create (True) the install directory', (4, 'file-management')], 'cleanupoldinstall': [True, 'Boolean to remove (True) or backup (False) the previous install directory with identical name or not.', (4, 'file-management')], 'toolchainopts': [{'optarch': True}, 'Extra options for compilers', (2, 'toolchain')], 'software_license': [None, 'Software license', (0, 'mandatory')], 'files_to_copy': [['bin', 'lib'], 'List of files or dirs to copy', (0, 'mandatory')], 'configopts': ['', 'Extra options passed to configure (default already has --prefix)', (3, 'build')], 'software_license_urls': [None, 'List of software license locations', (0, 'mandatory')]}'
== 2014-05-18 11:01:45,878 main.easyconfig.templates DEBUG 'version found in easyconfig is 0.1.11'
== 2014-05-18 11:01:45,878 main.easyconfig.templates DEBUG 'version found in easyconfig is 0.1.11'
== 2014-05-18 11:01:45,878 main.easyconfig.templates DEBUG 'version found in easyconfig is 0.1.11'
== 2014-05-18 11:01:45,878 main.easyconfig.templates DEBUG 'name: name, config: VCFtools'
== 2014-05-18 11:01:45,878 main.easyconfig.templates DEBUG 'name: version, config: 0.1.11'
== 2014-05-18 11:01:45,879 main.easyconfig.templates DEBUG 'name: versionsuffix, config: -Perl-5.16.3'
== 2014-05-18 11:01:45,879 main.easyconfig.templates DEBUG 'name: versionprefix, config: '
== 2014-05-18 11:01:45,879 main.MakeCp INFO 'Running method fetch_step part of step fetch'
== 2014-05-18 11:01:45,879 main.MakeCp WARNING "Easyconfig does not specify an EasyBuild-version (key 'easybuild_version')! Assuming the latest version"
== 2014-05-18 11:01:45,879 main.run DEBUG 'run_cmd: running cmd which eb (in /vscmnt/gent_vulpix/_/user/home/gent/vsc400/vsc40023)'
== 2014-05-18 11:01:45,884 main.run DEBUG 'cmd "which eb" exited with exitcode 0 and output:\n/user/scratch/gent/vsc400/vsc40023/easybuild_easy_installed/bin/eb\n'
== 2014-05-18 11:01:45,884 main.run DEBUG 'Using default regular expression: (?<![(,-]|\\w)(?:error|segmentation fault|failed)(?![(,-]|\\.?\\w)'
== 2014-05-18 11:01:45,884 main.easyconfig.tools DEBUG 'Also considering installation prefix /user/scratch/gent/vsc400/vsc40023/easybuild_easy_installed...'
== 2014-05-18 11:01:45,884 main.easyconfig.tools DEBUG 'Looking for easybuild/easyconfigs in path /user/scratch/gent/vsc400/vsc40023/easybuild_easy_installed/lib/python2.6/site-packages/easybuild_easyconfigs-1.13.0.0dev-py2.6.egg/easybuild/easyconfigs/easybuild/easyconfigs'
== 2014-05-18 11:01:45,887 main.easyconfig.tools DEBUG 'Looking for easybuild/easyconfigs in path /user/scratch/gent/vsc400/vsc40023/easybuild_easy_installed/lib/python2.6/site-packages/easybuild_easyconfigs-1.13.0.0dev-py2.6.egg/easybuild/easyconfigs/easybuild/easyconfigs'
== 2014-05-18 11:01:45,887 main.easyconfig.tools DEBUG 'Looking for easybuild/easyconfigs in path /user/scratchdelcatty/gent/gvo000/gvo00002/vsc40023/easybuild_easy_installed/lib/python2.6/site-packages/easybuild_framework-1.13.0dev-py2.6.egg/easybuild/easybuild/easyconfigs'
== 2014-05-18 11:01:45,887 main.easyconfig.tools DEBUG 'Looking for easybuild/easyconfigs in path /user/scratch/gent/vsc400/vsc40023/easybuild_easy_installed/lib/python2.6/site-packages/easybuild_easyconfigs-1.13.0.0dev-py2.6.egg/easybuild/easyconfigs'
== 2014-05-18 11:01:45,887 main.easyconfig.tools DEBUG 'Added /user/scratch/gent/vsc400/vsc40023/easybuild_easy_installed/lib/python2.6/site-packages/easybuild_easyconfigs-1.13.0.0dev-py2.6.egg/easybuild/easyconfigs to list of paths for easybuild/easyconfigs'
== 2014-05-18 11:01:45,887 main.easyconfig.tools DEBUG 'Looking for easybuild/easyconfigs in path /user/scratch/gent/vsc400/vsc40023/easybuild_easy_installed/lib/python2.6/site-packages/easybuild_easyblocks-1.13.0dev-py2.6.egg/easybuild/easyconfigs'
== 2014-05-18 11:01:45,889 main.easyconfig.tools DEBUG 'Looking for easybuild/easyconfigs in path /user/scratch/gent/vsc400/vsc40023/easybuild_easy_installed/lib/python2.6/site-packages/easybuild_framework-1.13.0dev-py2.6.egg/easybuild/easyconfigs'
== 2014-05-18 11:01:45,889 main.easyconfig.tools DEBUG 'Looking for easybuild/easyconfigs in path /user/home/gent/vsc400/vsc40023/.local/lib/python2.6/site-packages/keyring-3.7-py2.6.egg/easybuild/easyconfigs'
== 2014-05-18 11:01:45,892 main.easyconfig.tools DEBUG 'Looking for easybuild/easyconfigs in path /user/scratch/gent/vsc400/vsc40023/easybuild_easy_installed/lib/python2.6/site-packages/easybuild/easyconfigs'
== 2014-05-18 11:01:45,892 main.easyconfig.tools DEBUG 'Looking for easybuild/easyconfigs in path /user/scratch/gent/vsc400/vsc40023/easybuild_easy_installed/lib64/python2.6/site-packages/easybuild/easyconfigs'
== 2014-05-18 11:01:45,892 main.easyconfig.tools DEBUG 'Looking for easybuild/easyconfigs in path /user/home/gent/vsc400/vsc40023/.local/lib/python2.6/site-packages/easybuild/easyconfigs'
== 2014-05-18 11:01:45,893 main.easyconfig.tools DEBUG 'Looking for easybuild/easyconfigs in path /user/home/gent/vsc400/vsc40023/scratch/easybuild_easy_installed/lib/python2.6/site-packages/easybuild/easyconfigs'
== 2014-05-18 11:01:45,893 main.easyconfig.tools DEBUG 'Looking for easybuild/easyconfigs in path /user/home/gent/vsc400/vsc40023/scratch/easybuild_easy_installed/lib64/python2.6/site-packages/easybuild/easyconfigs'
== 2014-05-18 11:01:45,893 main.easyconfig.tools DEBUG 'Looking for easybuild/easyconfigs in path /usr/lib64/python26.zip/easybuild/easyconfigs'
== 2014-05-18 11:01:45,893 main.easyconfig.tools DEBUG 'Looking for easybuild/easyconfigs in path /usr/lib64/python2.6/easybuild/easyconfigs'
== 2014-05-18 11:01:45,893 main.easyconfig.tools DEBUG 'Looking for easybuild/easyconfigs in path /usr/lib64/python2.6/plat-linux2/easybuild/easyconfigs'
== 2014-05-18 11:01:45,894 main.easyconfig.tools DEBUG 'Looking for easybuild/easyconfigs in path /usr/lib64/python2.6/lib-tk/easybuild/easyconfigs'
== 2014-05-18 11:01:45,894 main.easyconfig.tools DEBUG 'Looking for easybuild/easyconfigs in path /usr/lib64/python2.6/lib-old/easybuild/easyconfigs'
== 2014-05-18 11:01:45,894 main.easyconfig.tools DEBUG 'Looking for easybuild/easyconfigs in path /usr/lib64/python2.6/lib-dynload/easybuild/easyconfigs'
== 2014-05-18 11:01:45,894 main.easyconfig.tools DEBUG 'Looking for easybuild/easyconfigs in path /usr/lib64/python2.6/site-packages/easybuild/easyconfigs'
== 2014-05-18 11:01:45,894 main.easyconfig.tools DEBUG 'Looking for easybuild/easyconfigs in path /usr/lib64/python2.6/site-packages/pbs/easybuild/easyconfigs'
== 2014-05-18 11:01:45,895 main.easyconfig.tools DEBUG 'Looking for easybuild/easyconfigs in path /usr/lib/python2.6/site-packages/easybuild/easyconfigs'
== 2014-05-18 11:01:45,895 main.easyconfig.tools DEBUG 'Looking for easybuild/easyconfigs in path /usr/lib/python2.6/site-packages/setuptools-0.6c11-py2.6.egg-info/easybuild/easyconfigs'
== 2014-05-18 11:01:45,895 main.easyconfig.tools DEBUG 'Looking for easybuild/easyconfigs in path /user/scratch/gent/vsc400/vsc40023/easybuild_easy_installed/lib64/python2.6/site-packages/easybuild/easyconfigs'
== 2014-05-18 11:01:45,895 main.easyconfig.tools DEBUG 'Looking for easybuild/easyconfigs in path /user/home/gent/vsc400/vsc40023/scratch/easybuild_easy_installed/lib64/python2.6/site-packages/easybuild/easyconfigs'
== 2014-05-18 11:01:45,895 main.easyconfig.tools DEBUG 'Looking for easybuild/easyconfigs in path /usr/lib/python2.6/site-packages/git/ext/gitdb/easybuild/easyconfigs'
== 2014-05-18 11:01:45,895 main.easyconfig.tools DEBUG 'Looking for easybuild/easyconfigs in path /usr/lib64/python2.6/site-packages/gitdb/ext/async/easybuild/easyconfigs'
== 2014-05-18 11:01:45,896 main.easyconfig.tools DEBUG 'Looking for easybuild/easyconfigs in path /usr/lib64/python2.6/site-packages/gitdb/ext/smmap/easybuild/easyconfigs'
== 2014-05-18 11:01:45,896 main.easyconfig.tools DEBUG 'Looking for easybuild/easyconfigs in path ../easybuild/easyconfigs'
== 2014-05-18 11:01:45,896 main.easyconfig.tools DEBUG 'Looking for easybuild/easyconfigs in path /usr/lib/graphviz/python/easybuild/easyconfigs'
== 2014-05-18 11:01:45,896 main.easyconfig.tools DEBUG 'Looking for easybuild/easyconfigs in path /usr/lib64/graphviz/python/easybuild/easyconfigs'
== 2014-05-18 11:01:45,896 main.easyconfig.tools DEBUG 'Looking for easybuild/easyconfigs in path /user/scratch/gent/vsc400/vsc40023/easybuild_easy_installed/easybuild/easyconfigs'
== 2014-05-18 11:01:45,909 main.MakeCp INFO 'Found file vcftools_0.1.11.tar.gz at /user/data/gent/vsc400/vsc40023/EasyBuild/sources/v/VCFtools/vcftools_0.1.11.tar.gz'
== 2014-05-18 11:01:45,911 main.MakeCp DEBUG 'File /user/data/gent/vsc400/vsc40023/EasyBuild/sources/v/VCFtools/vcftools_0.1.11.tar.gz found for source vcftools_0.1.11.tar.gz'
== 2014-05-18 11:01:45,911 main.MakeCp INFO "Added sources: [{'path': '/user/data/gent/vsc400/vsc40023/EasyBuild/sources/v/VCFtools/vcftools_0.1.11.tar.gz', 'cmd': None, 'finalpath': None, 'name': 'vcftools_0.1.11.tar.gz', 'checksum': None}]"
== 2014-05-18 11:01:45,911 main.MakeCp INFO 'no patches provided'
== 2014-05-18 11:01:45,911 main.filetools DEBUG 'Using blocksize 16777216 for calculating the checksum'
== 2014-05-18 11:01:45,945 main.MakeCp INFO 'md5 checksum for /user/data/gent/vsc400/vsc40023/EasyBuild/sources/v/VCFtools/vcftools_0.1.11.tar.gz: ddb49e9fa2bfedae36b4dce163adfaa8'
== 2014-05-18 11:01:45,949 main.affinity.<module> DEBUG 'sched_getaffinity for pid 88856 returned cpuset 0-15'
== 2014-05-18 11:01:45,949 main.run DEBUG 'run_cmd: running cmd ulimit -u (in /vscmnt/gent_vulpix/_/user/home/gent/vsc400/vsc40023)'
== 2014-05-18 11:01:45,953 main.run DEBUG 'cmd "ulimit -u" exited with exitcode 0 and output:\n515833\n'
== 2014-05-18 11:01:45,954 main.run DEBUG 'Using default regular expression: (?<![(,-]|\\w)(?:error|segmentation fault|failed)(?![(,-]|\\.?\\w)'
== 2014-05-18 11:01:45,954 main.MakeCp INFO 'Setting parallelism: 16'
== 2014-05-18 11:01:45,954 main.MakeCp INFO "Checking dirs that need to be created: ['/user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/VCFtools', '/user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/modules/all/VCFtools', '/user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/modules/bio/VCFtools']"
== 2014-05-18 11:01:45,956 main.filetools DEBUG 'Not creating existing path /user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/VCFtools'
== 2014-05-18 11:01:45,957 main.filetools DEBUG 'Not creating existing path /user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/modules/all/VCFtools'
== 2014-05-18 11:01:45,958 main.filetools DEBUG 'Not creating existing path /user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/modules/bio/VCFtools'
== 2014-05-18 11:01:45,958 main.MakeCp INFO 'creating build dir, resetting environment...'
== 2014-05-18 11:01:45,958 main.MakeCp INFO 'Starting ready step'
== 2014-05-18 11:01:45,959 main.easyconfig.templates DEBUG 'config: {'preinstallopts': ['', 'Extra prefix options for installation.', (3, 'build')], 'makeopts': ['', 'Extra options passed to make (default already has -j X)', (3, 'build')], 'configure_cmd_prefix': ['', 'Prefix to be glued before ./configure', (1, 'easyblock-specific')], 'moduleloadnoconflict': [False, "Don't check for conflicts, unload other versions instead ", (8, 'modules')], 'skip': [False, 'Skip existing software', (3, 'build')], 'cleanupoldbuild': [True, 'Boolean to remove (True) or backup (False) the previous build directory with identical name or not.', (4, 'file-management')], 'runtest': [None, 'Indicates if a test should be run after make; should specify argument after make (for e.g.,"test" for make test)', (3, 'build')], 'sources': [['%(namelower)s_%(version)s.tar.gz'], 'List of source files', (3, 'build')], 'versionsuffix': ['-Perl-5.16.3', 'Additional suffix for software version (placed after toolchain name)', (3, 'build')], 'exts_defaultclass': [None, 'List of module for and name of the default extension class', (7, 'extensions')], 'keeppreviousinstall': [False, 'Boolean to keep the previous installation with identical name. Experts only!', (4, 'file-management')], 'checksums': [[], 'Checksums for sources and patches', (3, 'build')], 'skipsteps': [[], 'Skip these steps', (3, 'build')], 'parsed': [True, 'This is a parsed easyconfig', 'HIDDEN'], 'builddependencies': [[], 'List of build dependencies', (5, 'dependencies')], 'modextravars': [{}, 'Extra environment variables to be added to module file', (8, 'modules')], 'unpack_options': [None, 'Extra options for unpacking source', (3, 'build')], 'group': [None, 'Name of the user group for which the software should be available', (6, 'license')], 'patches': [[], 'List of patches to apply', (3, 'build')], 'with_configure': [False, 'Run configure script before building', (3, 'build')], 'easyblock': ['MakeCp', 'EasyBlock to use for building', (3, 'build')], 'easybuild_version': [None, 'EasyBuild-version this spec-file was written for', (3, 'build')], 'keepsymlinks': [False, 'Boolean to determine whether symlinks are to be kept during copying or if the content of the files pointed to should be copied', (4, 'file-management')], 'start_dir': [None, 'Path to start the make in. If the path is absolute, use that path. If not, this is added to the guessed path.', (4, 'file-management')], 'version': ['0.1.11', 'Version of software', (0, 'mandatory')], 'buildininstalldir': [False, 'Boolean to build (True) or not build (False) in the installation directory', (4, 'file-management')], 'allow_system_deps': [[], 'Allow listed system dependencies (format: (<name>, <version>))', (5, 'dependencies')], 'osdependencies': [[], 'OS dependencies that should be present on the system', (5, 'dependencies')], 'buildstats': [None, 'A list of dicts with build statistics', (9, 'other')], 'homepage': ['http://vcftools.sourceforge.net/', 'The homepage of the software', (0, 'mandatory')], 'premakeopts': ['', 'Extra options pre-passed to build command.', (3, 'build')], 'license_file': [None, 'License file for software', (6, 'license')], 'tests': [[], 'List of test-scripts to run after install. A test script should return a non-zero exit status to fail', (3, 'build')], 'license_server': [None, 'License server for software', (6, 'license')], 'tar_config_opts': [False, 'Override tar settings as determined by configure.', (1, 'easyblock-specific')], 'description': ['The aim of VCFtools is to provide \n methods for working with VCF files: validating, \n merging, comparing and calculate some basic population\n genetic statistics. ', 'A short description of the software', (0, 'mandatory')], 'modextrapaths': [{'PERL5LIB': 'lib/perl5/site_perl'}, 'Extra paths to be prepended in module file', (8, 'modules')], 'exts_list': [[], 'List with extensions added to the base installation', (7, 'extensions')], 'docurls': [None, 'List of urls with documentation of the software (not necessarily on homepage)', (0, 'mandatory')], 'stop': [None, 'Keyword to halt the build process after a certain step.', (3, 'build')], 'source_urls': [['http://download.sourceforge.net/%(namelower)s'], 'List of URLs for source files', (3, 'build')], 'exts_classmap': [{}, 'Map of extension name to class for handling build and installation.', (7, 'extensions')], 'moduleforceunload': [False, 'Force unload of all modules when loading the extension', (8, 'modules')], 'dependencies': [[{'dummy': False, 'toolchain': {'version': '5.5.0', 'name': 'ictce'}, 'name': 'Perl', 'versionsuffix': '', 'version': '5.16.3', 'mod_name': 'Perl/5.16.3-ictce-5.5.0'}], 'List of dependencies', (5, 'dependencies')], 'moduleclass': ['bio', 'Module class to be used for this software', (8, 'modules')], 'key': [None, 'Key for installing software', (6, 'license')], 'prefix_opt': ['--prefix=', 'Prefix command line option for configure script', (1, 'easyblock-specific')], 'toolchain': [{'version': '5.5.0', 'name': 'ictce'}, 'Name and version of toolchain', (0, 'mandatory')], 'parallel': [16, 'Degree of parallelism for e.g. make (default: based on the number of cores, active cpuset and restrictions in ulimit)', (3, 'build')], 'exts_filter': [None, 'Extension filter details: template for cmd and input to cmd (templates for name, version and src).', (7, 'extensions')], 'versionprefix': ['', 'Additional prefix for software version (placed before version and toolchain name)', (3, 'build')], 'sanity_check_paths': [{'files': ['bin/vcftools', 'bin/vcf-sort', 'bin/vcf-stats'], 'dirs': []}, "List of files and directories to check (format: {'files':<list>, 'dirs':<list>})", (3, 'build')], 'installopts': ['', 'Extra options for installation', (3, 'build')], 'onlytcmod': [False, 'Boolean/string to indicate if the toolchain should only load the environment with module (True) or also set all other variables (False) like compiler CC etc (if string: comma separated list of variables that will be ignored).', (2, 'toolchain')], 'unwanted_env_vars': [[], "List of environment variables that shouldn't be set during build", (3, 'build')], 'name': ['VCFtools', 'Name of software', (0, 'mandatory')], 'maxparallel': [None, 'Max degree of parallelism', (3, 'build')], 'preconfigopts': ['', 'Extra options pre-passed to configure.', (3, 'build')], 'sanity_check_commands': [[], "format: [(name, options)] e.g. [('gzip','-h')]. Using a non-tuple is equivalent to (name, '-h')", (3, 'build')], 'license_server_port': [None, 'Port for license server', (6, 'license')], 'dontcreateinstalldir': [False, 'Boolean to create (False) or not create (True) the install directory', (4, 'file-management')], 'cleanupoldinstall': [True, 'Boolean to remove (True) or backup (False) the previous install directory with identical name or not.', (4, 'file-management')], 'toolchainopts': [{'optarch': True}, 'Extra options for compilers', (2, 'toolchain')], 'software_license': [None, 'Software license', (0, 'mandatory')], 'files_to_copy': [['bin', 'lib'], 'List of files or dirs to copy', (0, 'mandatory')], 'configopts': ['', 'Extra options passed to configure (default already has --prefix)', (3, 'build')], 'software_license_urls': [None, 'List of software license locations', (0, 'mandatory')]}'
== 2014-05-18 11:01:45,960 main.easyconfig.templates DEBUG 'version found in easyconfig is 0.1.11'
== 2014-05-18 11:01:45,960 main.easyconfig.templates DEBUG 'version found in easyconfig is 0.1.11'
== 2014-05-18 11:01:45,961 main.easyconfig.templates DEBUG 'version found in easyconfig is 0.1.11'
== 2014-05-18 11:01:45,961 main.easyconfig.templates DEBUG 'name: name, config: VCFtools'
== 2014-05-18 11:01:45,961 main.easyconfig.templates DEBUG 'name: version, config: 0.1.11'
== 2014-05-18 11:01:45,961 main.easyconfig.templates DEBUG 'name: versionsuffix, config: -Perl-5.16.3'
== 2014-05-18 11:01:45,961 main.easyconfig.templates DEBUG 'name: versionprefix, config: '
== 2014-05-18 11:01:45,962 main.easyconfig.templates DEBUG 'config: {'preinstallopts': ['', 'Extra prefix options for installation.', (3, 'build')], 'makeopts': ['', 'Extra options passed to make (default already has -j X)', (3, 'build')], 'configure_cmd_prefix': ['', 'Prefix to be glued before ./configure', (1, 'easyblock-specific')], 'moduleloadnoconflict': [False, "Don't check for conflicts, unload other versions instead ", (8, 'modules')], 'skip': [False, 'Skip existing software', (3, 'build')], 'cleanupoldbuild': [True, 'Boolean to remove (True) or backup (False) the previous build directory with identical name or not.', (4, 'file-management')], 'runtest': [None, 'Indicates if a test should be run after make; should specify argument after make (for e.g.,"test" for make test)', (3, 'build')], 'sources': [['%(namelower)s_%(version)s.tar.gz'], 'List of source files', (3, 'build')], 'versionsuffix': ['-Perl-5.16.3', 'Additional suffix for software version (placed after toolchain name)', (3, 'build')], 'exts_defaultclass': [None, 'List of module for and name of the default extension class', (7, 'extensions')], 'keeppreviousinstall': [False, 'Boolean to keep the previous installation with identical name. Experts only!', (4, 'file-management')], 'checksums': [[], 'Checksums for sources and patches', (3, 'build')], 'skipsteps': [[], 'Skip these steps', (3, 'build')], 'parsed': [True, 'This is a parsed easyconfig', 'HIDDEN'], 'builddependencies': [[], 'List of build dependencies', (5, 'dependencies')], 'modextravars': [{}, 'Extra environment variables to be added to module file', (8, 'modules')], 'unpack_options': [None, 'Extra options for unpacking source', (3, 'build')], 'group': [None, 'Name of the user group for which the software should be available', (6, 'license')], 'patches': [[], 'List of patches to apply', (3, 'build')], 'with_configure': [False, 'Run configure script before building', (3, 'build')], 'easyblock': ['MakeCp', 'EasyBlock to use for building', (3, 'build')], 'easybuild_version': [None, 'EasyBuild-version this spec-file was written for', (3, 'build')], 'keepsymlinks': [False, 'Boolean to determine whether symlinks are to be kept during copying or if the content of the files pointed to should be copied', (4, 'file-management')], 'start_dir': [None, 'Path to start the make in. If the path is absolute, use that path. If not, this is added to the guessed path.', (4, 'file-management')], 'version': ['0.1.11', 'Version of software', (0, 'mandatory')], 'buildininstalldir': [False, 'Boolean to build (True) or not build (False) in the installation directory', (4, 'file-management')], 'allow_system_deps': [[], 'Allow listed system dependencies (format: (<name>, <version>))', (5, 'dependencies')], 'osdependencies': [[], 'OS dependencies that should be present on the system', (5, 'dependencies')], 'buildstats': [None, 'A list of dicts with build statistics', (9, 'other')], 'homepage': ['http://vcftools.sourceforge.net/', 'The homepage of the software', (0, 'mandatory')], 'premakeopts': ['', 'Extra options pre-passed to build command.', (3, 'build')], 'license_file': [None, 'License file for software', (6, 'license')], 'tests': [[], 'List of test-scripts to run after install. A test script should return a non-zero exit status to fail', (3, 'build')], 'license_server': [None, 'License server for software', (6, 'license')], 'tar_config_opts': [False, 'Override tar settings as determined by configure.', (1, 'easyblock-specific')], 'description': ['The aim of VCFtools is to provide \n methods for working with VCF files: validating, \n merging, comparing and calculate some basic population\n genetic statistics. ', 'A short description of the software', (0, 'mandatory')], 'modextrapaths': [{'PERL5LIB': 'lib/perl5/site_perl'}, 'Extra paths to be prepended in module file', (8, 'modules')], 'exts_list': [[], 'List with extensions added to the base installation', (7, 'extensions')], 'docurls': [None, 'List of urls with documentation of the software (not necessarily on homepage)', (0, 'mandatory')], 'stop': [None, 'Keyword to halt the build process after a certain step.', (3, 'build')], 'source_urls': [['http://download.sourceforge.net/%(namelower)s'], 'List of URLs for source files', (3, 'build')], 'exts_classmap': [{}, 'Map of extension name to class for handling build and installation.', (7, 'extensions')], 'moduleforceunload': [False, 'Force unload of all modules when loading the extension', (8, 'modules')], 'dependencies': [[{'dummy': False, 'toolchain': {'version': '5.5.0', 'name': 'ictce'}, 'name': 'Perl', 'versionsuffix': '', 'version': '5.16.3', 'mod_name': 'Perl/5.16.3-ictce-5.5.0'}], 'List of dependencies', (5, 'dependencies')], 'moduleclass': ['bio', 'Module class to be used for this software', (8, 'modules')], 'key': [None, 'Key for installing software', (6, 'license')], 'prefix_opt': ['--prefix=', 'Prefix command line option for configure script', (1, 'easyblock-specific')], 'toolchain': [{'version': '5.5.0', 'name': 'ictce'}, 'Name and version of toolchain', (0, 'mandatory')], 'parallel': [16, 'Degree of parallelism for e.g. make (default: based on the number of cores, active cpuset and restrictions in ulimit)', (3, 'build')], 'exts_filter': [None, 'Extension filter details: template for cmd and input to cmd (templates for name, version and src).', (7, 'extensions')], 'versionprefix': ['', 'Additional prefix for software version (placed before version and toolchain name)', (3, 'build')], 'sanity_check_paths': [{'files': ['bin/vcftools', 'bin/vcf-sort', 'bin/vcf-stats'], 'dirs': []}, "List of files and directories to check (format: {'files':<list>, 'dirs':<list>})", (3, 'build')], 'installopts': ['', 'Extra options for installation', (3, 'build')], 'onlytcmod': [False, 'Boolean/string to indicate if the toolchain should only load the environment with module (True) or also set all other variables (False) like compiler CC etc (if string: comma separated list of variables that will be ignored).', (2, 'toolchain')], 'unwanted_env_vars': [[], "List of environment variables that shouldn't be set during build", (3, 'build')], 'name': ['VCFtools', 'Name of software', (0, 'mandatory')], 'maxparallel': [None, 'Max degree of parallelism', (3, 'build')], 'preconfigopts': ['', 'Extra options pre-passed to configure.', (3, 'build')], 'sanity_check_commands': [[], "format: [(name, options)] e.g. [('gzip','-h')]. Using a non-tuple is equivalent to (name, '-h')", (3, 'build')], 'license_server_port': [None, 'Port for license server', (6, 'license')], 'dontcreateinstalldir': [False, 'Boolean to create (False) or not create (True) the install directory', (4, 'file-management')], 'cleanupoldinstall': [True, 'Boolean to remove (True) or backup (False) the previous install directory with identical name or not.', (4, 'file-management')], 'toolchainopts': [{'optarch': True}, 'Extra options for compilers', (2, 'toolchain')], 'software_license': [None, 'Software license', (0, 'mandatory')], 'files_to_copy': [['bin', 'lib'], 'List of files or dirs to copy', (0, 'mandatory')], 'configopts': ['', 'Extra options passed to configure (default already has --prefix)', (3, 'build')], 'software_license_urls': [None, 'List of software license locations', (0, 'mandatory')]}'
== 2014-05-18 11:01:45,963 main.easyconfig.templates DEBUG 'version found in easyconfig is 0.1.11'
== 2014-05-18 11:01:45,963 main.easyconfig.templates DEBUG 'version found in easyconfig is 0.1.11'
== 2014-05-18 11:01:45,963 main.easyconfig.templates DEBUG 'version found in easyconfig is 0.1.11'
== 2014-05-18 11:01:45,964 main.easyconfig.templates DEBUG 'name: name, config: VCFtools'
== 2014-05-18 11:01:45,964 main.easyconfig.templates DEBUG 'name: version, config: 0.1.11'
== 2014-05-18 11:01:45,964 main.easyconfig.templates DEBUG 'name: versionsuffix, config: -Perl-5.16.3'
== 2014-05-18 11:01:45,964 main.easyconfig.templates DEBUG 'name: versionprefix, config: '
== 2014-05-18 11:01:45,964 main.MakeCp INFO 'Running method check_readiness_step part of step ready'
== 2014-05-18 11:01:45,965 main.EnvironmentModulesC DEBUG 'Current MODULEPATH: /user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/modules/all:/etc/modulefiles/vsc'
== 2014-05-18 11:01:45,965 main.EnvironmentModulesC DEBUG "Adjusted LD_LIBRARY_PATH from '' to ''"
== 2014-05-18 11:01:45,965 main.EnvironmentModulesC DEBUG "Running module command '/usr/bin/modulecmd python --terse list' from /vscmnt/gent_vulpix/_/user/home/gent/vsc400/vsc40023"
== 2014-05-18 11:01:45,977 main.EnvironmentModulesC DEBUG "Correcting paths in LD_LIBRARY_PATH from [''] to []"
== 2014-05-18 11:01:45,978 main.MakeCp WARNING "Loaded modules detected: ['cluster/delcatty']"
== 2014-05-18 11:01:45,978 main.Ictce DEBUG "add_dependencies: adding toolchain dependencies [{'dummy': False, 'toolchain': {'version': '5.5.0', 'name': 'ictce'}, 'name': 'Perl', 'versionsuffix': '', 'version': '5.16.3', 'mod_name': 'Perl/5.16.3-ictce-5.5.0'}]"
== 2014-05-18 11:01:45,978 main.EnvironmentModulesC DEBUG 'Current MODULEPATH: /user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/modules/all:/etc/modulefiles/vsc'
== 2014-05-18 11:01:45,978 main.EnvironmentModulesC DEBUG "Adjusted LD_LIBRARY_PATH from '' to ''"
== 2014-05-18 11:01:45,979 main.EnvironmentModulesC DEBUG "Running module command '/usr/bin/modulecmd python --terse avail Perl/5.16.3-ictce-5.5.0' from /vscmnt/gent_vulpix/_/user/home/gent/vsc400/vsc40023"
== 2014-05-18 11:01:47,756 main.EnvironmentModulesC DEBUG "Correcting paths in LD_LIBRARY_PATH from [''] to []"
== 2014-05-18 11:01:47,757 main.EnvironmentModulesC DEBUG "'module available Perl/5.16.3-ictce-5.5.0' gave 0 answers: []"
== 2014-05-18 11:01:47,757 main.Ictce ERROR "EasyBuild crashed with an error (at easybuild/tools/toolchain/toolchain.py:279 in add_dependencies): add_dependencies: no module 'Perl/5.16.3-ictce-5.5.0' found for dependency {'dummy': False, 'toolchain': {'version': '5.5.0', 'name': 'ictce'}, 'name': 'Perl', 'versionsuffix': '', 'version': '5.16.3', 'mod_name': 'Perl/5.16.3-ictce-5.5.0'}"
== 2014-05-18 11:01:47,757 main.easyblock.<module> WARNING "build failed (first 300 chars): EasyBuild crashed with an error (at easybuild/tools/toolchain/toolchain.py:279 in add_dependencies): add_dependencies: no module 'Perl/5.16.3-ictce-5.5.0' found for dependency {'dummy': False, 'toolchain': {'version': '5.5.0', 'name': 'ictce'}, 'name': 'Perl', 'versionsuffix': '', 'version': '5.16.3"
== 2014-05-18 11:01:47,757 main.MakeCp INFO 'Closing log for application name VCFtools version 0.1.11'