Florin Chelaru florin-chelaru
florin-chelaru
/ my-settings-overrides.js
Last active
August 29, 2015 14:00
EpiViz Chart Plugins API Tutorial
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| epiviz.EpiViz.SETTINGS.chartTypes.push('epiviz.plugins.charts.MyTrackType'); |
florin-chelaru
/ epiviz-settings-test.js
Created
April 14, 2014 19:10
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| /** | |
| * Created by Florin Chelaru ( florinc [at] umd [dot] edu ) | |
| * Date: 4/8/14 | |
| * Time: 9:13 AM | |
| */ | |
| /** | |
| * Overrides the default configuration settings for EpiViz | |
| * | |
| * Settings specific to measuring performance |
florin-chelaru
/ epiviz-settings-localhost.js
Created
April 14, 2014 15:23
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| /** | |
| * Created by Florin Chelaru ( florinc [at] umd [dot] edu ) | |
| * Date: 10/9/13 | |
| * Time: 11:13 AM | |
| */ | |
| /** | |
| * Overrides the default configuration settings for EpiViz | |
| */ | |
| epiviz.EpiViz.SETTINGS = { |
florin-chelaru
/ scatter-plot-type.js
Last active
August 29, 2015 13:58
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| /** | |
| * Created by Florin Chelaru ( florinc [at] umd [dot] edu ) | |
| * Date: 11/14/13 | |
| * Time: 11:55 PM | |
| */ | |
| //goog.provide('epiviz.plugins.charts.ScatterPlotType'); | |
| goog.require('epiviz.ui.charts.Chart'); |
florin-chelaru
/ scatter-plot.js
Last active
August 29, 2015 13:58
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| /** | |
| * Created by Florin Chelaru ( florinc [at] umd [dot] edu ) | |
| * Date: 11/14/13 | |
| * Time: 11:55 PM | |
| */ | |
| // goog.provide('epiviz.plugins.charts.ScatterPlot'); | |
| /** | |
| * @param {string} id |
florin-chelaru
/ exon-expression-track-handler.js
Created
March 26, 2014 12:58
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| /** | |
| * | |
| * User: florin | |
| * Date: 8/2/13 | |
| * Time: | |
| * Created by Llewellyn | |
| */ | |
| ExonExpressionTrackHandler.prototype = new TrackTypeHandler({ | |
| dataTypeHandler: new ProbeDataHandler(), |
florin-chelaru
/ exon-expression-track.js
Last active
December 29, 2015 00:29
— forked from hcorrada/exon-expression-track.js
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| /** | |
| * Created by Llewellyn | |
| * User: florin | |
| * Date: 8/2/13 | |
| * Time: | |
| * To change this template use File | Settings | File Templates. | |
| */ | |
| ExonExpressionTrack.prototype = new LineTrack(); | |
| ExonExpressionTrack.prototype.constructor = ExonExpressionTrack; |
florin-chelaru
/ barcode-plot-handler.js
Created
November 21, 2013 01:39
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| /** | |
| * Created with JetBrains PhpStorm. | |
| * User: florin | |
| * Date: 4/10/13 | |
| * Time: 10:43 AM | |
| * To change this template use File | Settings | File Templates. | |
| */ | |
| BarcodePlotHandler.prototype = new ChartTypeHandler({ | |
| dataTypeHandler: new BarcodeDataHandler(), |
florin-chelaru
/ barcode-plot.js
Created
November 21, 2013 01:39
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| /** | |
| * Created with JetBrains PhpStorm. | |
| * User: florin | |
| * Date: 4/4/13 | |
| * Time: 7:22 PM | |
| * To change this template use File | Settings | File Templates. | |
| */ | |
| BarcodePlot.prototype = new BaseChart(); | |
| BarcodePlot.prototype.constructor = BarcodePlot; |
florin-chelaru
/ samfile_usage.py
Created
November 7, 2013 02:12
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| import org.umd.assemblytest.readcoverage.samfile as sam | |
| # Parse a file into a SamFile instance | |
| samfile = sam.SamFile.read('../../../../../../tutorial/read_coverage/influenza-A.sam') | |
| # In the background, the SamFile class partitions the alignments in the file | |
| # by reference sequence, and organizes them in an IntervalTree, used for quick | |
| # retrieval of overlaps. | |
| # Compute the coverage of reference sequence '1' within the interval 1-100, and |
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