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Welcome to NVIDIA DGX Station Version 4.0.7 (GNU/Linux 4.15.0-47-generic x86_64)
user@user-DGX-Station:~$ lscpu
Architecture:        x86_64
CPU op-mode(s):      32-bit, 64-bit
Byte Order:          Little Endian
CPU(s):              40
On-line CPU(s) list: 0-39
Thread(s) per core:  2
Core(s) per socket:  20
Socket(s):           1

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-- https://www.microsoft.com/en-us/download/details.aspx?id=17062
-- https://supportdownloads.adobe.com/detail.jsp?ftpID=5542
-- https://helpx.adobe.com/acrobat/kb/pdf-search-breaks-110-install.html
-- add C:\Program Files\Adobe\Adobe PDF iFilter 11 for 64-bit platforms\bin to PATH

EXEC sp_fulltext_service 'verify_signature', 0
EXEC sp_fulltext_service 'load_os_resources', 1
EXEC sp_fulltext_service 'Restart_all_fdhosts'
EXEC sp_help_fulltext_system_components 'filter'

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#!/bin/sh
sudo apt-get -y update
sudo apt-get -y upgrade
sudo apt-get -y dist-upgrade
sudo do-release-upgrade

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# sudo apt install -y linux-tools-$(uname -r)
sudo apt install -y linux-tools-generic

# sudo turbostat --interval 1 --debug
sudo turbostat -s Core,CPU,Avg_MHz,Busy%,Bzy_MHz,TSC_MHz,CoreTmp,PkgTmp,PkgWatt -c core -i 1

while :; do :; done

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ALTER LOGIN sa ENABLE ;
GO
--change the password
ALTER LOGIN sa WITH PASSWORD = --'P@ssw0rd' ;
GO

USE [master]
GO
EXEC xp_instance_regwrite N'HKEY_LOCAL_MACHINE', N'Software\Microsoft\MSSQLServer\MSSQLServer', N'LoginMode', REG_DWORD, 2
GO

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sudo apt update
sudo apt install -y r-base-dev

# ubuntu 18.04 works, 16.04 needs download from https://dlang.org/download.html
sudo apt install -y ldc

git clone --recursive https://github.com/biod/sambamba.git -b v0.6.8
cd sambamba
make -j $(nproc)

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# https://root.cern/install/dependencies/
sudo apt install -y libxpm-dev libxft-dev libxext-dev python-dev
git clone https://github.com/root-project/root.git -b v6-18-04

mkdir root_build root_install && cd root_build
cmake -DCMAKE_BUILD_TYPE=Release -DCMAKE_INSTALL_PREFIX=../root_install ../root
cmake --build . --config Release -v -- install -j$(nproc)
source ../root_install/bin/thisroot.sh

wget https://bitbucket.org/MDukhan/yeppp/downloads/yeppp-1.0.0.tar.bz2

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# ubuntu 18.04
wget -q https://packages.microsoft.com/config/ubuntu/18.04/packages-microsoft-prod.deb
sudo dpkg -i packages-microsoft-prod.deb
sudo add-apt-repository universe
sudo apt-get install -y apt-transport-https
sudo apt-get update
sudo apt-get install -y dotnet-sdk-2.2

mkdir Nirvana
cd Nirvana

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sudo apt install -y libboost-all-dev

git clone https://github.com/dellytools/delly -b v0.7.9 --recursive

make -j $(nproc)

delly call -g human_g1k_v37_decoy.fasta -o sample.bcf -x human.hg19.excl.tsv -q 20 -s 15 sample.bam

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conda install -c gurobi gurobi
# http://www.gurobi.com/registration/general-reg
grbgetkey ????????-????-????-????-????????????
export GRB_LICENSE_FILE=~/gurobi.lic

pip install git+https://github.com/inumanag/[email protected]

aldy -p illumina -g CYP2D6 -o sample.txt sample.bam