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| user@ubuntu:~/Flops/version3/binaries-linux$ ./2006-Core2 | |
| Running Core 2 tuned binary with 1 thread... | |
| Single-Precision - 128-bit SSE - Add/Sub | |
| GFlops = 34.624 | |
| Result = 4.33405e+06 | |
| Double-Precision - 128-bit SSE2 - Add/Sub | |
| GFlops = 17.312 | |
| Result = 2.18144e+06 |
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| $ fio --loops=5 --size=1g --runtime=5 --time_based=1 --stonewall --direct=1 --group_reporting \ | |
| > --name=SeqQ8T1read --bs=1048576 --iodepth=8 --rw=read \ | |
| > --name=SeqQ8T1write --bs=1048576 --iodepth=8 --rw=write \ | |
| > --name=SeqQ1T1read --bs=1048576 --iodepth=1 --rw=read \ | |
| > --name=SeqQ1T1write --bs=1048576 --iodepth=1 --rw=write \ | |
| > --name=4kQ32T16read --bs=4096 --iodepth=32 --numjobs=16 --rw=randread \ | |
| > --name=4kQ32T16write --bs=4096 --iodepth=32 --numjobs=16 --rw=randwrite \ | |
| > --name=4kQ1T1read --bs=4096 --iodepth=1 --rw=randread \ | |
| > --name=4kQ1T1write --bs=4096 --iodepth=1 --rw=randwrite | |
| SeqQ8T1read: (g=0): rw=read, bs=(R) 1024KiB-1024KiB, (W) 1024KiB-1024KiB, (T) 1024KiB-1024KiB, ioengine=psync, iodepth=8 |
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| $ fio --loops=5 --size=1g --runtime=5 --time_based=1 --stonewall --direct=1 --group_reporting \ | |
| > --name=SeqQ8T1read --bs=1048576 --iodepth=8 --rw=read \ | |
| > --name=SeqQ8T1write --bs=1048576 --iodepth=8 --rw=write \ | |
| > --name=SeqQ1T1read --bs=1048576 --iodepth=1 --rw=read \ | |
| > --name=SeqQ1T1write --bs=1048576 --iodepth=1 --rw=write \ | |
| > --name=4kQ32T16read --bs=4096 --iodepth=32 --numjobs=16 --rw=randread \ | |
| > --name=4kQ32T16write --bs=4096 --iodepth=32 --numjobs=16 --rw=randwrite \ | |
| > --name=4kQ1T1read --bs=4096 --iodepth=1 --rw=randread \ | |
| > --name=4kQ1T1write --bs=4096 --iodepth=1 --rw=randwrite | |
| SeqQ8T1read: (g=0): rw=read, bs=(R) 1024KiB-1024KiB, (W) 1024KiB-1024KiB, (T) 1024KiB-1024KiB, ioengine=psync, iodepth=8 |
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| git clone https://github.com/alexdobin/STAR.git -b 2.7.9a | |
| cd STAR/source | |
| # edit Makefile:L35 CXXFLAGS_SIMD ?= -mavx2 | |
| # to CXXFLAGS_SIMD ?= -march=native | |
| make STAR -j $(nproc) | |
| sudo make install | |
| cd ~ | |
| mkdir Gencode_human | |
| cd Gencode_human |
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| sudo mount /dev/sda2 /mnt | |
| sudo mkdir /mnt/boot/efi | |
| sudo mount /dev/sda1 /mnt/boot/efi | |
| sudo mount --bind /dev /mnt/dev | |
| sudo mount --bind /proc /mnt/proc | |
| sudo mount --bind /sys /mnt/sys | |
| sudo cp /etc/resolv.conf /mnt/etc/resolv.conf | |
| #### after reboot, ubuntu 18.04, sudo ln -s ../run/systemd/resolve/stub-resolv.conf /etc/resolv.conf | |
| sudo chroot /mnt | |
| apt install -y grub-efi-amd64-bin |
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| lscpu | |
| Architecture: x86_64 | |
| CPU op-mode(s): 32-bit, 64-bit | |
| Byte Order: Little Endian | |
| CPU(s): 36 | |
| On-line CPU(s) list: 0-35 | |
| Thread(s) per core: 1 | |
| Core(s) per socket: 18 | |
| Socket(s): 2 | |
| NUMA node(s): 2 |
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| wget https://archive.apache.org/dist/hadoop/common/hadoop-2.7.3/hadoop-2.7.3.tar.gz | |
| tar axvf hadoop-2.7.3.tar.gz | |
| cd hadoop-2.7.3/ | |
| #etc/hadoop/hadoop-env.sh | |
| # set to the root of your Java installation | |
| export JAVA_HOME=/usr/lib/jvm/java-8-openjdk-amd64 | |
| #etc/hadoop/core-site.xml | |
| <configuration> |
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| ubuntu@t21p-4u-001:/sda$ ~/fio/fio --loops=5 --size=1g --runtime=10 --stonewall --direct=1 --group_reporting \ | |
| > --name=SeqQ32T1read --bs=128k --iodepth=32 --rw=read \ | |
| > --name=SeqQ32T1write --bs=128k --iodepth=32 --rw=write \ | |
| > --name=4kQ8T8read --bs=4k --iodepth=8 --numjobs=8 --rw=randread \ | |
| > --name=4kQ8T8write --bs=4k --iodepth=8 --numjobs=8 --rw=randwrite \ | |
| > --name=4kQ32T1read --bs=4k --iodepth=32 --rw=randread \ | |
| > --name=4kQ32T1write --bs=4k --iodepth=32 --rw=randwrite \ | |
| --name=4kQ1T1read --bs=4k --iodepth=1 --rw=randread \ | |
| > --name=4kQ1T1read --bs=4k --iodepth=1 --rw=randread \ | |
| > --name=4kQ1T1write --bs=4k --iodepth=1 --rw=randwrite |
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| wget https://downloads.alluxio.io/downloads/files/2.0.1/alluxio-2.0.1-bin.tar.gz | |
| tar axvf alluxio-2.0.1-bin.tar.gz | |
| cd alluxio-2.0.1/ | |
| cp conf/alluxio-site.properties.template conf/alluxio-site.properties | |
| echo "" >> conf/alluxio-site.properties | |
| # standalone | |
| #echo "alluxio.master.hostname=localhost" >> conf/alluxio-site.properties | |
| #echo "alluxio.master.mount.table.root.ufs=\${alluxio.work.dir}/underFSStorage" >> conf/alluxio-site.properties |
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| user@ubuntu:/dev/shm$ ~/fio/fio --loops=5 --size=1g --runtime=10 --stonewall --direct=0 --group_reporting \ | |
| --name=SeqQ32T1read --bs=128k --iodepth=32 --rw=read \ | |
| --name=SeqQ32T1write --bs=128k --iodepth=32 --rw=write \ | |
| --name=4kQ8T8read --bs=4k --iodepth=8 --numjobs=8 --rw=randread \ | |
| --name=4kQ8T8write --bs=4k --iodepth=8 --numjobs=8 --rw=randwrite \ | |
| --name=4kQ32T1read --bs=4k --iodepth=32 --rw=randread \ | |
| --name=4kQ32T1write --bs=4k --iodepth=32 --rw=randwrite \ | |
| --name=4kQ1T1read --bs=4k --iodepth=1 --rw=randread \ | |
| --name=4kQ1T1write --bs=4k --iodepth=1 --rw=randwrite | |
| SeqQ32T1read: (g=0): rw=read, bs=(R) 128KiB-128KiB, (W) 128KiB-128KiB, (T) 128KiB-128KiB, ioengine=psync, iodepth=32 |