Wayne's Bioinformatics Code Portal fomightez

fomightez / bio_align.py

Created June 6, 2016 13:56 — forked from JoaoRodrigues/bio_align.py

Sequence-based structure alignment of protein structures with Biopython

	#!/usr/bin/env python

	"""
	Sequence-based structural alignment of two proteins.
	"""

	from __future__ import print_function, division

	import argparse
	import os

fomightez / diff.py

Created December 16, 2015 16:09 — forked from jorendorff/diff.py

A primitive `diff` in 50 lines of Python. Explained here: http://pynash.org/2013/02/26/diff-in-50-lines.html

	""" Usage: python diff.py FILE1 FILE2

	A primitive `diff` in 50 lines of Python.
	Explained here: http://pynash.org/2013/02/26/diff-in-50-lines.html
	"""

	def longest_matching_slice(a, a0, a1, b, b0, b1):
	sa, sb, n = a0, b0, 0

	runs = {}