Filip Popić fpopic

BioInf

Projekt iz predmeta Bioinformatika

Installation will install files in folders: headers => '/usr/local/include' sources => '/usr/local/lib'

	#include <bits/stdc++.h>
	#include <sdsl/suffix_arrays.hpp>

	using namespace std;
	using namespace sdsl;

	int main() {

	// [1,a], [1,b]
	uint64_t a = 5;

	const unordered_map<pair<node_t, node_t>, vector<int>> Instance::Edges = {
	{make_pair(1 -1, 4 -1 ), {1, 4, 1100}},
	{make_pair(1 -1, 5 -1 ), {1, 5, 1100}},
	{make_pair(1 -1, 6 -1 ), {1, 6, 1100}},
	{make_pair(2 -1, 4 -1 ), {2, 4, 1100}},
	{make_pair(2 -1, 5 -1 ), {2, 5, 1100}},
	{make_pair(2 -1, 6 -1 ), {2, 6, 1100}},
	{make_pair(3 -1, 4 -1 ), {3, 4, 1100}},
	{make_pair(3 -1, 5 -1 ), {3, 5, 1100}},
	{make_pair(3 -1, 6 -1 ), {3, 6, 1100}},

	In file included from /home/spidey/Gits/bioinf/bioinf/test/tests/sais_tests.cpp:2:0:

	/usr/local/include/sais.hxx: In instantiation of
	‘index_type saisxx_bwt(string_type, string_type, sarray_type, index_type, index_type)

	[
	with
	string_type = __gnu_cxx::__normal_iterator<char*, std::vector<char> >;
	sarray_type = __gnu_cxx::__normal_iterator<int*, std::vector<int> >;
	index_type = unsigned int

	fpopic@lenovo:~/Desktop/bioinf-files/bioinf-git/bioinf$ cmake --build /home/fpopic/Desktop/bioinf-files/bioinf-git/bioinf/cmake-build-debug --target bioinf_tests.exe -- -j 4
	[ 22%] Built target mylib
	[ 44%] Built target gtest
	[ 66%] Built target gtest_main
	[100%] Built target bioinf_tests.exe
	fpopic@lenovo:~/Desktop/bioinf-files/bioinf-git/bioinf$

	private static DataSource getDataSource(final String url, final Properties properties){
	BasicDataSource dataSource = new BasicDataSource();
	dataSource.setDriverClassName(properties.getProperty(DRIVER_CLASS_NAME));
	dataSource.setUrl(properties.getProperty(url));
	dataSource.setUsername(properties.getProperty(USER_NAME));
	dataSource.setPassword(properties.getProperty(PASSWORD));
	return dataSource;
	}

	cd lib/

	cd sdsl-lite/
	./install.sh


	cd sdsl-lite/
	mkdir build
	cmake -DCMAKE_BUILD_TYPE="Release" -DCMAKE_INSTALL_PREFIX="/usr/local"
	sudo make

	#include <bits/stdc++.h>
	using namespace std;
	using llong = long long;


	void faktoriziraj(int x, llong& dvojke, llong& petice){
	while(x%10 ==0 && x>1){
	dvojke++;petice++;
	x/=10;
	}