Steve Moss gawbul

GNU GENERAL PUBLIC LICENSE

Version 3, 29 June 2007

Everyone is permitted to copy and distribute verbatim copies of this license document, but changing it is not allowed.

What

Roll your own iPython Notebook server with Amazon Web Services (EC2) using their Free Tier.

What are we using? What do you need?

An active AWS account. First time sign-ups are eligible for the free tier for a year
One Micro Tier EC2 Instance
With AWS we will use the stock Ubuntu Server AMI and customize it.
Anaconda for Python.
Coffee/Beer/Time

Unfortunately, the Cisco AnyConnect client for Mac conflicts with Pow. And by "conflicts", I mean it causes a grey-screen-of-death kernel panic anytime you connect to the VPN and Pow is installed.

As an alternative, there is OpenConnect, a command-line client for Cisco's AnyConnect SSL VPN.

Here's how to get it set up on Mac OS X:

OpenConnect can be installed via homebrew:
```
 brew update
```

brew install openconnect

	#!/usr/bin/ruby
	require 'sqlite3'

	cite_part = ARGV[0]
	db_name = "/Users/nernst/Library/Application\ Support/Mendeley\ Desktop/neil\@neilernst.net\@www.mendeley.com.sqlite"
	db = SQLite3::Database.new( db_name )
	db.results_as_hash = true
	query = "select citationkey, title, year from Documents where citationkey like '%#{cite_part}%'"#MATCH '#{cite_part}'"#{}like '%#{cite_part}%'"
	db.execute( query ) do \|row\|
	print row['citationKey'] + '\|'

	#!/usr/bin/python
	'''
	Launch codeml on all the alignments

	Marco Galardini 2012
	University of Florence
	GPL v3.0
	'''
	from optparse import OptionParser, OptionGroup
	from time import strftime