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diff --git a/test/CMakeLists.txt b/test/CMakeLists.txt | |
index 1a53e8cdd..bbf92481c 100644 | |
--- a/test/CMakeLists.txt | |
+++ b/test/CMakeLists.txt | |
@@ -23,7 +23,7 @@ set (cpptests | |
) | |
set (alias_parts 1) | |
set (automorphism_parts 1 2 3 4 5 6 7 8 9 10) | |
-set (builder_parts 1 2 3 4 5) | |
+set (builder_parts 1 2 3 4 5 6) |
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#!/usr/bin/env python | |
from __future__ import print_function | |
import sys | |
from cclib.parser import ccopen | |
import logging | |
def spectra(etens, etoscs, low = 0.5, high = 10.0, resolution = 0.01, smear = 0.04): | |
"""Return arrays of the energies and intensities of a Lorentzian-blurred spectrum""" |
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#!/usr/bin/env python | |
import sys, os | |
from openbabel import openbabel as ob | |
from openbabel import pybel | |
# syntax: | |
# molml.py [files] |
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# Calculate nConf20 - from https://pubs.acs.org/doi/10.1021/acs.jcim.6b00565 | |
# Jerome G. P. Wicker and Richard I. Cooper J. Chem. Inf. Model. 2016 56(12) pp. 2347-2352 | |
# reformatted for Python3 by Geoffrey R. Hutchison https://hutchison.chem.pitt.edu | |
from collections import OrderedDict | |
import fileinput | |
import numpy as np | |
from rdkit import Chem |
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#!/usr/bin/env python | |
import sys, os, math, random | |
from openbabel import pybel | |
from openbabel import openbabel as ob | |
colors = [ [ 0, 0, 0 ], # Du | |
[0.75, 0.75, 0.75], # H | |
[0.85, 1.00, 1.00], # He |
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diff --git a/src/formats/formats.cmake b/src/formats/formats.cmake | |
index c94c8def2..70ee7d81c 100644 | |
--- a/src/formats/formats.cmake | |
+++ b/src/formats/formats.cmake | |
@@ -77,6 +77,7 @@ endif(MSVC OR HAVE_REGEX_H) | |
if(WITH_JSON) | |
set(formats_json | |
chemdoodlejsonformat | |
+ chemicaljsonformat | |
pubchemjsonformat |
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from __future__ import annotations | |
from typing import List, Optional | |
from pydantic import BaseModel, Field | |
# todo: | |
# - double-check open-spin systems | |
# - other suggestions |
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#!/usr/bin/python | |
import json | |
import socket | |
import struct | |
import glob | |
import tempfile | |
import os | |
class Connection: |
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#!/usr/bin/env python | |
import sys | |
import os | |
import cclib | |
from cclib.parser import ccopen | |
from rdkit import Chem | |
try: |
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#!/usr/bin/python | |
import json | |
import socket | |
import struct | |
import glob | |
import tempfile | |
import os | |
import time |