gilesc

from dataclasses import dataclass
import pandas as pd
import numpy as np
import scipy.stats

@dataclass
class BinaryAnnotation:
    columns: np.array
    index: np.array
    data: np.array # 2D array of packed bits

gilesc

import functools
import time
import pickle
import os

def decorator(save_path="default"):
    def wrapper(fn):
        @functools.wraps(fn)
        def wrap(self, *args, **kwargs):
            if not os.path.exists(save_path):

gilesc

import atexit
import codecs
import functools
import gzip
import os.path
import shutil
import sys
import tempfile
import urllib.request

gilesc

import pandas as pd
import numpy as np
import patsy

import wrenlab.R.wrap.DESeq2

def fn():
    X = pd.DataFrame(np.random.randint(10000, size=(12, 1000)))
    D = pd.DataFrame({
        "V1": [0,0,0,0,0,0,1,1,1,1,1,1],