Skip to content

Instantly share code, notes, and snippets.

View gingi's full-sized avatar

Shiran Pasternak gingi

View GitHub Profile
@gingi
gingi / ensembl_id.sh
Created January 6, 2012 18:52
Fetch Ensembl gene IDs based on external ID.
#!/bin/sh
mysqluser='anonymous';
mysqlpass='';
mysqlhost='mysql.ebi.ac.uk';
mysqlport=4157;
function usage () {
[ -n "$1" ] && echo $1
cat <<USAGE
==> Downloading http://www.graphviz.org/pub/graphviz/stable/SOURCES/graphviz-2.28.0.tar.gz
File already downloaded in /Users/pasternak/Library/Caches/Homebrew
/usr/bin/tar xf /Users/pasternak/Library/Caches/Homebrew/graphviz-2.28.0.tar.gz
==> Patching
/usr/bin/patch -f -p1 -i 001-homebrew.diff
patching file lib/gvc/Makefile.in
==> ./configure --disable-debug --disable-dependency-tracking --prefix=/usr/local/Cellar/graphviz/2.28.0 --with-qt=no --disable-quartz --disable-java --disable-ocaml --disable-perl --disable-php --disable-python --disable-r --disable-ruby --disable-sharp --disable-swig
./configure --disable-debug --disable-dependency-tracking --prefix=/usr/local/Cellar/graphviz/2.28.0 --with-qt=no --disable-quartz --disable-java --disable-ocaml --disable-perl --disable-php --disable-python --disable-r --disable-ruby --disable-sharp --disable-swig
checking build system type... x86_64-apple-darwin11.2.0
checking host system type... x86_64-apple-darwin11.2.0