ginixsan’s gists

ginixsan / extract-pubmed-abstracts.py

Created June 3, 2023 15:57 — forked from StevenSong/extract-pubmed-abstracts.py

	import os
	import re
	import gzip
	import hashlib
	from tqdm import tqdm
	from bs4 import BeautifulSoup, SoupStrainer

	fnames = []
	for fname in os.listdir('PubMed'):
	if fname.endswith('.xml'):

ginixsan / ImpactHunter.py

Created June 3, 2023 15:57 — forked from SemiQuant/ImpactHunter.py

Summarize the publication of a researcher, and calculate their IFs for first and last authorships in a data range

	#!/bin/python
	from Bio import Entrez
	import subprocess
	import ast
	import statistics
	def search_publications(author_name, start_year, end_year):
	# Search PubMed for publications by the author within the specified date range
	query = f'({author_name}[Author]) AND (Journal Article[Publication Type]) NOT (Clinical Trial[Publication Type]) NOT preprint[pt] NOT review[pt] AND ({start_year}:{end_year}[PDAT])'
	handle = Entrez.esearch(db='pubmed', term=query)
	record = Entrez.read(handle)

ginixsan / search_biopython.py

Created June 3, 2023 15:57 — forked from bonzanini/search_biopython.py

Searching PubMed with Biopython

	# This code uses Biopython to retrieve lists of articles from pubmed
	# you need to install Biopython first.

	# If you use Anaconda:
	# conda install biopython

	# If you use pip/venv:
	# pip install biopython

	# Full discussion:

ginixsan / pubmed-publications.html

Created June 3, 2023 15:55 — forked from slowkow/pubmed-publications.html

Get an HTML list of PubMed publications

	<!DOCTYPE html>
	<body>

	<!-- Copied directly from http://www.ephys.org/ by Damian J Williams -->

	<input placeholder="Kamil Slowikowski" name="name"/>

	<p id="demo"></p>

	<script>

ginixsan / arduino_byte_array_to_string.cpp

Created February 3, 2023 18:29 — forked from mischazip/arduino_byte_array_to_string.cpp

arduino convert string to/from byte array

	void setup(void)
	{
	}

	void loop(void)
	{
	byte byteArray[5];
	strcpy((char *)byteArray,"0123"); //init byte array, index 5 = \0
	String myString = String((char *)byteArray);
	}

ginixsan / nodejs_java_encrypt_decrypt_128.js

Created January 17, 2023 07:49 — forked from luizwbr/nodejs_java_encrypt_decrypt_128.js

Encrypt and Decrypt using 128 for Nodejs or Javascript that actually works

	// None of the tutorals could help me, so I adapted a few codes.
	// What I really want is make a full duplex way between NodeJS and Java, using encrypt/decrypt with AES 128 bit

	// 1 - you must have to generate the key
	openssl enc -aes-128-cbc -k secret -P -md sha1

	// key examples:
	// DCDD74627CD60252E35DFBA91A4556AA
	// 2CB24CFDB3F2520A5809EB4851168162
	// 468CA14CA44C82B8264F61D42E0E9FA1

ginixsan / client.html

Created December 7, 2022 08:37 — forked from agrueneberg/client.html

HMAC-SHA256 example for verifying both the data integrity and the authentication of a request in Node.js and web browsers.

	<!DOCTYPE html>
	<html lang="en">
	<head>
	<meta charset="UTF-8">
	<title>HMAC-SHA256 Example</title>
	</head>
	<body>
	<script src="http://crypto.stanford.edu/sjcl/sjcl.js"></script>
	<script>
	var sharedSecret, query, signature, hmac, xhr;

ginixsan / iBeaconCalculateDistance.js

Created October 26, 2022 17:39 — forked from JoostKiens/iBeaconCalculateDistance.js

iBeacon calculate distance in meters

	// Based on http://stackoverflow.com/a/20434019

	function calculateAccuracy(txPower, rssi) {
	if (rssi === 0) {
	return -1; // if we cannot determine accuracy, return -1.
	}

	var ratio = rssi * 1 / txPower;
	if (ratio < 1.0) {
	return Math.pow(ratio, 10);

ginixsan / express.js

Created August 18, 2022 18:26 — forked from gabrielstuff/express.js

express + passport + session / req.session

	/**
	* Module dependencies.
	*/

	var express = require('express'),
	mongoStore = require('connect-mongo')(express),
	flash = require('connect-flash'),
	viewHelpers = require('./middlewares/view'),
	fs = require('fs'),
	upload = require('jquery-file-upload-middleware');

ginixsan / async-await-forEach-alternatives.md

Created May 28, 2022 09:06 — forked from joeytwiddle/async-await-forEach-alternatives.md

Do not use forEach with async-await

TLDR: Use for...of instead of forEach in asynchronous code.

Array.prototype.forEach is not designed for asynchronous code. (It was not suitable for promises, and it is not suitable for async-await.)

For example, the following forEach loop might not do what it appears to do:

Ginés Sanz Sanchis ginixsan