trongthanh

# source: http://st-on-it.blogspot.com/2010/01/how-to-move-folders-between-git.html
# First of all you need to have a clean clone of the source repository so we didn't screw the things up.

git clone git://server.com/my-repo1.git

# After that you need to do some preparations on the source repository, nuking all the entries except the folder you need to move. Use the following command

git filter-branch --subdirectory-filter your_dir -- -- all

# This will nuke all the other entries and their history, creating a clean git repository that contains only data and history from the directory you need. If you need to move several folders, you have to collect them in a single directory using the git mv command.

jonschlinkert

adapted from this blog

# YAML
name: Jon

# YAML
object:

hugorodgerbrown

# This script was created to convert a directory full
# of markdown files into rst equivalents. It uses
# pandoc to do the conversion.
#
# 1. Install pandoc from http://johnmacfarlane.net/pandoc/
# 2. Copy this script into the directory containing the .md files
# 3. Ensure that the script has execute permissions
# 4. Run the script
#
# By default this will keep the original .md file

rxaviers

People

:bowtie:	😄 :smile:	😆 :laughing:
😊 :blush:	😃 :smiley:	☺️ :relaxed:
😏 :smirk:	😍 :heart_eyes:	😘 :kissing_heart:
😚 :kissing_closed_eyes:	😳 :flushed:	😌 :relieved:
😆 :satisfied:	😁 :grin:	😉 :wink:
😜 :stuck_out_tongue_winking_eye:	😝 :stuck_out_tongue_closed_eyes:	😀 :grinning:
😗 :kissing:	😙 :kissing_smiling_eyes:	😛 :stuck_out_tongue:

multidis

## regular case
foo <- function(a, b, c)  a + b - c ## does something
foo2 <- function(b, c)  b + c ## also some function
foo(a=1, b=2, c=5)
foo2(b=2, c=5)  ## repeating list of multiple arguments

## passing a list
arg.list <- list(b=2, c=5)
do.call(foo, c(list(a=1), arg.list))
do.call(foo2, arg.list)

garrettdreyfus

def yes_or_no(question):
    reply = str(raw_input(question+' (y/n): ')).lower().strip()
    if reply[0] == 'y':
        return True
    if reply[0] == 'n':
        return False
    else:
        return yes_or_no("Uhhhh... please enter ")

jhcepas

import sys
from ete2 import Tree
import random

def get_json(node):
    # Read ETE tag for duplication or speciation events
    if not hasattr(node, 'evoltype'):
        dup = random.sample(['N','Y'], 1)[0]
    elif node.evoltype == "S":
        dup = "N"

arne-cl

# restore_packages.R
#
# installs each package from the stored list of packages
# source: http://hlplab.wordpress.com/2012/06/01/transferring-installed-packages-between-different-installations-of-r/

load("~/installed_packages.rda")

for (count in 1:length(installedpackages)) {
    install.packages(installedpackages[count])
}

walterst

#!/usr/bin/env python

# USAGE
# python create_consensus_taxonomy.py X Y Z A
# where X is the taxonomy mapping file for all NR seqs, Y is the representative
# file (i.e. one of the rep_set/ files with the 119 release), Z is the OTU 
# mapping file created from running pick_otus.py, and A is the output 
# consensus mapping file

from sys import argv

walterst

#!/usr/bin/env python

# USAGE
# python create_majority_taxonomy.py X Y Z A
# where X is the taxonomy mapping file for all NR seqs, Y is the representative
# file (i.e. one of the rep_set/ files with the 119 release), Z is the OTU 
# mapping file created from running pick_otus.py, and A is the output 
# consensus mapping file

from sys import argv