Oleksandr Huziy guziy

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#StandWithUkraine

guziy / Makefile.offline_rout

Created February 10, 2013 16:38

Makefile for offline routing project

	SUITE = gcc

	#librmn = $(ARMNLIB)/lib/Linux/librmn.a
	#@echo "using suite $(SUITE) for build"

	ifeq ($(SUITE), pgi)

	boost_root = /rech/huziy/Programs/boost
	#@echo "using suite $(SUITE) for build"
	NETCDF = $(HOME)/rech_progs_40Gb/Programs/netcdf

guziy / gist:5558598

Last active December 17, 2015 05:29

bash select a column in file

cut -d" " -f9 file_list.txt > file_list1.txt

guziy / get_run_interval_from_logs.sh

Last active December 20, 2015 04:48

Parsing model log file

	#!/bin/bash
	#set -x
	echo $1
	found=$(fgrep --text "At" $1 \| fgrep "User" \| fgrep "Time" \| fgrep "(sec)")

	#echo "$found"


	echo "-----------------------------------------------------------------------"
	echo "start: " $(echo "$found" \| head -1 \| cut -f 1 -d"," )

guziy / changer.sh

Last active December 21, 2015 03:29

Correcting files using NCO utilities (namely: ncatted and ncap2)

	#!/bin/bash

	folder=.
	prefix=ANUSPLIN_latlon_stmn_
	var_name=daily_minimum_temperature
	for x in ${folder}/${prefix}*.nc
	do
	x_name=$(basename $x)
	part=$(echo $x_name \| cut -d"." -f 1)
	#get the year and month from the file name

guziy / cdo_infov_output.txt

Created August 15, 2013 17:24

	cdo infov ANUSPLIN_latlon_stmn_2005_11.nc
	-1 : Date Time Level Gridsize Miss : Minimum Mean Maximum : Parameter name
	1 : 2005-11-01 00:00:00 0 544680 287417 : -33.800 -10.348 10.620 : daily_minimum_temperature
	2 : 2005-11-02 00:00:00 0 544680 287417 : -38.890 -11.761 11.000 : daily_minimum_temperature
	3 : 2005-11-03 00:00:00 0 544680 287417 : -42.150 -12.516 11.690 : daily_minimum_temperature
	4 : 2005-11-04 00:00:00 0 544680 287417 : -46.670 -12.967 13.740 : daily_minimum_temperature
	5 : 2005-11-05 00:00:00 0 544680 287417 : -45.040 -13.658 13.910 : daily_minimum_temperature
	6 : 2005-11-06 00:00:00 0 544680 287417 : -45.100 -14.014 11.840 : daily_minimum_temperature
	7 : 2005-11-07 00:00:00 0 544680 287417 : -43.120 -13.841 10.800 : daily_minimum_temperature
	8 : 2005-11-08 00:00:00

guziy / cdo_infov_old_output.txt

Created August 15, 2013 17:30

	cdo infov ANUSPLIN_latlon_stmn_2005_11.nc
	-1 : Date Time Level Gridsize Miss : Minimum Mean Maximum : Parameter name
	1 : 0000-00-01 00:00:00 0 544680 0 : nan nan nan : daily_minimum_temperature
	2 : 0000-00-02 00:00:00 0 544680 0 : nan nan nan : daily_minimum_temperature
	3 : 0000-00-03 00:00:00 0 544680 0 : nan nan nan : daily_minimum_temperature
	4 : 0000-00-04 00:00:00 0 544680 0 : nan nan nan : daily_minimum_temperature
	5 : 0000-00-05 00:00:00 0 544680 0 : nan nan nan : daily_minimum_temperature
	6 : 0000-00-06 00:00:00 0 544680 0 : nan nan nan : daily_minimum_temperature
	7 : 0000-00-07 00:00:00 0 544680 0 : nan nan nan : daily_minimum_temperature
	8 : 0000-00-08 00:00:00

guziy / kill.sh

Created October 28, 2013 21:04

Kill all processes containing bootstrap.py in the command

	for id in $(ps ax \| grep bootstrap.py \| cut -d" " -f1)
	do
	kill -9 $id
	done

guziy / create_folders.py

Last active January 1, 2016 04:08

Automate folder creation for different processes

	import os
	import sys
	"""
	Author: Huziy
	Purpose: Automate folder creation for different processes
	"""

	def main():
	args = sys.argv

guziy / Converter.py

Last active June 30, 2022 04:59

A quick way to copy variables and metadata from one netcdf file to another using netcdf4-python

	# -- coding: utf-8 --
	from netCDF4 import Dataset

	#input file
	dsin = Dataset("crop.nc")

	#output file
	dsout = Dataset("crop.nc3", "w", format="NETCDF3_CLASSIC")

	#Copy dimensions

guziy / test_array_stack_mean.py

Created July 21, 2014 22:58

biggus mean of a stack of masked arrays

	import biggus
	import numpy as np


	def main():
	x = np.random.randn(10, 10)
	y = np.ma.masked_where(x > 0, x)
	yinv = np.ma.masked_where(~y.mask, x)