hammer’s gists

hammer / xllm-vs-levanter-for-frontier-llm-pretraining.html

Last active September 29, 2026 08:01

IFM vs. Marin: pretraining, data and post-training stacks

	<!DOCTYPE html>
	<html lang="en">
	<head>
	<meta charset="utf-8">
	<meta name="viewport" content="width=device-width, initial-scale=1">
	<title>IFM vs. Marin: pretraining, data and post-training stacks</title>
	<style>
	:root {
	--ink: #1a1a2e; --ink-secondary: #555770; --ink-faint: #8a8a9a;
	--accent: #8b2500; --accent-light: #c4530a;

hammer / expected-mfu-for-the-535b-a23b-hero-on-megatron-instead-of-l.html

Last active September 23, 2026 13:24

Expected MFU for the 535B-A23B hero on Megatron instead of Levanter

	<!DOCTYPE html>
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	<head>
	<meta charset="utf-8">
	<meta name="viewport" content="width=device-width, initial-scale=1">
	<title>Expected MFU for the 535B-A23B hero on a Megatron stack instead of Levanter</title>
	<style>
	:root {
	--ink: #1a1a2e; --ink-secondary: #555770; --ink-faint: #8a8a9a;
	--accent: #8b2500; --accent-light: #c4530a;

hammer / covering-the-competency-map-and-the-task-curriculum-where-ma.html

Created September 22, 2026 06:03

Covering the competency map and the task curriculum: where Marin's RL environments come from

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	<meta name="viewport" content="width=device-width, initial-scale=1">
	<title>Covering the competency map and the task curriculum: where Marin's RL environments come from</title>
	<style>
	:root {
	--ink: #1a1a2e; --ink-secondary: #555770; --ink-faint: #8a8a9a;
	--accent: #8b2500; --accent-light: #c4530a;

hammer / looped-transformer-for-marin-s-grug-templates-proposed-issue.html

Created September 20, 2026 18:55

Looped transformer for Marin's grug templates: proposed issue and replication plan for arXiv 2609.19107

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	<meta name="viewport" content="width=device-width, initial-scale=1">
	<title>Looped transformer for Marin's grug templates: proposed issue and replication plan for arXiv 2609.19107</title>
	<style>
	:root {
	--ink: #1a1a2e; --ink-secondary: #555770; --ink-faint: #8a8a9a;
	--accent: #8b2500; --accent-light: #c4530a;

hammer / platform-input-support-config.yaml

Last active July 8, 2019 20:28

Configuration organized by ES index; note that this will not parse correctly! It's for purely pedagogical purposes.

	# [invalid-]evidence-data
	evidences:
	gs_output_dir: evidence-files
	downloads:
	- bucket: otar000-evidence_input/CRISPR/json
	output_filename: crispr-{suffix}.json.gz
	resource: input-file
	subset_key:
	- target
	- id

hammer / mrtarget.data.19.06.yml

Last active July 7, 2019 19:46

Configuration organized by ES index

hammer / Dockerfile

Last active February 24, 2018 20:39 — forked from flying-sheep/Dockerfile

scanpy-locale-setup

	FROM ubuntu:17.10

	ENV LANG C.UTF-8

	RUN apt-get update && \
	apt-get install -y python3 python3-pip libxml2-dev zlib1g-dev wget git cmake && \
	apt-get clean

	RUN apt-get install -y python3-numpy # not necessary in scanpy 0.2.9.2/0.2.10

hammer / cosmic_sigs.R

Last active January 9, 2017 21:19

Exploring COSMIC signatures

	# deconstructSigs signatures.cosmic
	library("deconstructSigs")
	library("tibble")
	signatures.cosmic.tidy <- tibble::rownames_to_column(as.data.frame(t(signatures.cosmic)))

	# COSMIC http://cancer.sanger.ac.uk/cancergenome/assets/signatures_probabilities.txt
	cosmic.current <- read.delim("http://cancer.sanger.ac.uk/cancergenome/assets/signatures_probabilities.txt", check.names = F)
	cosmic.current.clean <- cosmic.current[ , colnames(cosmic.current) != ""]
	cosmic.current.tidy <- cosmic.current.clean[,names(cosmic.current.clean) not in c("Substitution Type","Trinucleotide")]

hammer / seqs2bed.py

Created January 11, 2016 22:20

Convert DeepSEA training sequences a BED file

	import h5py

	# HDF5 file with two arrays: 'trainxdata' (samples) and 'traindata' (labels)
	INFILE_SAMPLES = ''
	INFILE_REFERENCE_FASTA = ''
	OUTFILE_FASTA = 'deepsea_train10k.fa'
	OUTFILE_BED = 'deepsea_train10k.bed'

	def onehot2base(onehot):
	if onehot == [1,0,0,0]:

hammer / sgd.ml

Created December 9, 2014 20:33

Jeff Hammerbacher hammer