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def predict_score(model_pickle_path, target_filepath, n_meta_columns, n_feature_columns): | |
""" | |
model_pickle_path : | |
target_filepath : target gene expression examples with meta | |
n_meta_columns : number of meta columns | |
n_feature_columns : number of feature(gene)s | |
return score DataFrame | |
""" | |
df0 = pd.read_csv(target_filepath, header=-1) | |
x_header = df0.iloc[:, 0:n_meta_columns] |
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def cosine_distances(X, Y): | |
""" | |
X : Target example score vector DataFrame with inst_id as the first column | |
Y : All example score vector DataFrame with inst_id as the first column | |
return pair-wise cosine distance DataFrame | |
""" | |
from sklearn.metrics import pairwise | |
x_header = X.iloc[:, 0].values | |
X = X.iloc[:, 1:] | |
y_header = Y.iloc[:, 0].values |
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for idx in range(3,351): | |
tablename = "table_{0}".format(idx) | |
print(tablename) | |
!bq rm -f -t $tablename |
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CREATE TEMPORARY FUNCTION do(x float64, y float64) | |
RETURNS float64 | |
LANGUAGE js AS """ | |
function add(a, b) { | |
return a + b; | |
} | |
return add(x, y) | |
"""; | |
with data as ( | |
select * |
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https://gist.github.com/application2000/73fd6f4bf1be6600a2cf9f56315a2d91 | |
sudo apt-get update -y && \ | |
sudo apt-get upgrade -y && \ | |
sudo apt-get dist-upgrade -y && \ | |
sudo apt-get install build-essential software-properties-common -y && \ | |
sudo add-apt-repository ppa:ubuntu-toolchain-r/test -y && \ | |
sudo apt-get update -y && \ | |
sudo apt-get install gcc-7 g++-7 -y && \ | |
sudo update-alternatives --install /usr/bin/gcc gcc /usr/bin/gcc-7 60 --slave /usr/bin/g++ g++ /usr/bin/g++-7 && \ |
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