hryk

#!/usr/bin/ruby

require 'java'

require File.dirname(__FILE__) + "/../jars/commons-logging-1.1.1.jar"
require File.dirname(__FILE__) + "/../jars/httpcore-4.0.1.jar"
require File.dirname(__FILE__) + "/../jars/httpclient-4.0.1.jar"

import "org.apache.http.client.ResponseHandler"
import "org.apache.http.client.HttpClient"

hryk

#!/usr/local/bin/perl
use strict;
use warnings;
use Carp;
use IPC::Run qw/start pump finish timeout run/;
use Getopt::Long;
use Term::ProgressBar;
use File::Which;
use FindBin qw/$Bin/;
use Data::Dumper;

hryk

set nocompatible

filetype off " for Vundle

set rtp+=~/.vim/bundle/vundle/
call vundle#rc()

" github repos

Bundle 'Shougo/neocomplcache.git'

hryk

#!/bin/sh

## FUNCTIONS

from_url_to_path(){
  if [ $# -ne 1 ]; then echo "ArgumentError" && return 1; fi;
  dirname=`echo $1 | sed 's/^git:\/\/github.com\/.*\///g' | sed 's/\.git$//g'`;
  echo "$VIMSET_TMPDIR/$dirname";
  return 0;
};

hryk

# from http://devoh.com/posts/2009/03/couchdb-leopard

# First, create the _couchdb user.
sudo dscl . create /Users/_couchdb UniqueID 115
sudo dscl . create /Users/_couchdb PrimaryGroupID 115
sudo dscl . create /Users/_couchdb RealName "CouchDB Server"
sudo dscl . create /Users/_couchdb NFSHomeDirectory /usr/local/pgsql/
sudo dscl . create /Users/_couchdb Password "*"
sudo dscl . append /Users/_couchdb RecordName couchdb

hryk

#!/usr/bin/env perl

use strict;
use warnings;
use File::MimeInfo::Magic;
@File::MimeInfo::DIRS = qw(/usr/local/share/mime/);
File::MimeInfo->rehash();

use URI;

hryk

class String
  def constantize_with_context(context=nil, args={:raise => true})
    unless context.nil?
      begin
        const = context.const_get self.to_sym
      rescue NameError => e
        if args[:raise]
          raise e 
        else
          return constantize_without_context

hryk

# Gemfile

gem "ffi-rzmq"

# application.rb
module Foo
 class Application
   ...
   config.zeromq_context = ZMQ::Context.new
   ...

hryk

puts 'test'
puts 'foovar'

hryk

package Bio::Tools::Protscale;
use strict;
use warnings;
use base qw(Bio::Root::Root);
use LWP 5.64;
use HTML::TreeBuilder::XPath;
use Data::Dumper;

=head1 NAME