Hugh Pearse hughpearse

Build Burrows-Wheeler Alignment (BWA) for Windows

Install the following BWA dependencies in Cygwin:

git
gcc-core
zlib-devel

Compile BWA.

cygwin$ git clone https://github.com/lh3/bwa.git

Installing Samtools Bcftools and HTSlib on Windows

Install and launch MSYS2 build platform.

cmd> winget install --id=msys2.msys2
cmd> c:\msys64\msys2.exe

Using the MSYS2 Pacman package manager, install the gcc build tools and samtools dependencies.

Show Code

foo@bar$ git clone https://github.com/hughpearse/kafka-example.git
foo@bar$ cd kafka-example
foo@bar$ vim ./bartender/app.py
foo@bar$ vim ./waiter/app.py

Run OpenShift 4.x locally

This explains how to set up Code Ready Containers (CRC) with kubernetes Operators.

https://cloud.redhat.com/openshift/create/local

Install and launch

foo@bar$ open ~/Downloads/crc-macos-amd64.pkg
foo@bar$ crc setup

How to deploy Lithops Multicloud with Apache Openwhisk Python 3 to Kubernetes

This explains how to set up your serverless (FaaS) environment to run Lithops multicloud library. This allows you to avoid vendor lock-in and offboard your serverless code from cloud services.

Reset kubernetes

foo@bar$ export KUBECONFIG=
foo@bar$ minikube stop
foo@bar$ minikube delete --all

	<!DOCTYPE html>
	<html>
	<head>
	<title>Image Transform with TensorFlow.js</title>
	<!-- Load TensorFlow.js library -->
	<script src="https://cdn.jsdelivr.net/npm/@tensorflow/[email protected]/dist/tf.min.js"></script>
	<script src="https://cdn.jsdelivr.net/npm/@tensorflow/[email protected]/dist/tf-tflite.min.js"></script>
	</head>
	<body>
	<h1>Image Transform with TensorFlow.js</h1>

	#!/bin/python
	import glob
	import pathlib
	import os
	import textdistance
	import sys

	"""
	Author: Hugh Pearse
	requirements.txt: textdistance==4.3.0

	import java.io.IOException;
	import java.nio.file.Files;
	import java.nio.file.Paths;
	import java.nio.file.StandardOpenOption;

	class FileIO {
	public static void main(String[] args) {
	try {
	Files.write(Paths.get("output/example.yaml"), new String("Hello, ").getBytes());
	Files.write(Paths.get("output/example.yaml"), new String("World!").getBytes(), StandardOpenOption.APPEND);

	How to compile the linux kernel, launch it as a process and boot into Alpine linux

	Command + Shift + 5

	Host -> Docker GCC -> UML w/ Alpine

	# get docker for compiling
	foo@host:~$ docker pull gcc
	# launch new container
	foo@host:~$ docker run --privileged --name gcc -it gcc /bin/bash

	import requests
	import json

	headers = {'Accept': 'application/json', 'User-Agent': 'Hugh'}
	url = "https://reddit.com/r/worldnews.json"
	r = requests.get(url, headers=headers)
	print(r.json()['data'])