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Isaac Hodes ihodes

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ihodes / python-settings.el
Last active August 29, 2015 14:00
;;; python-settings
;;; requires modes: ein python jedi
;; if not in ipython notebook mode allows sending to ipython server from buffer (C-c C-c)
;; (switch to shell with C-c C-z)
(setq
python-shell-interpreter "ipython"
@ihodes
ihodes / -
Created May 1, 2014 14:42
(global-set-key (kbd "M-/") 'hippie-expand)
(global-set-key (kbd "C-x C-b") 'ibuffer)
(global-set-key (kbd "C-s") 'isearch-forward-regexp)
(global-set-key (kbd "C-r") 'isearch-backward-regexp)
(global-set-key (kbd "C-c r") 'replace-regexp)
(global-set-key (kbd "C-x C-u") 'undo-tree-undo)
(global-set-key (kbd "C-x C-r") 'undo-tree-redo)
@ihodes
ihodes / walkthrough.md
Created May 1, 2014 19:05
  1. Install JDK 1.7 from oracle (http://www.oracle.com/technetwork/java/javase/downloads/jdk7-downloads-1880260.html)
  2. Install IntelliJ (community edition is fine)
  1. Launch, Configure (option on splash screen) -> Plugins -> search for Scala (http://link.isaachodes.io/image/1g1P0K2G1i2A) and install, apply + restart
  2. Clone github repo of ADAM https://github.com/bigdatagenomics/adam (git clone [email protected]:bigdatagenomics/adam.git)
  3. Import project in intellij--choose the cloned repo, then the pom.xml in it to make sure the maven deps and build are imported by IntelliJ (http://link.isaachodes.io/image/3S1X2U2a0V3R)
  • follow the wizard, which should set things up intelligently
@ihodes
ihodes / mvn-ensime.py
Last active August 29, 2015 14:00
# example .ensime generation
# Maven to Ensime config. convertor:
#
# Prints .ensime configuration for Maven project.
#
# USAGE:
# mvn-ensime PROJECT_NAME PROJECT_PACKAGE ROOT_DIR TARGET_DIR SOURCE_DIRS*
#
python mvn-ensime.py adam org.bdgenomics.adam \
@ihodes
ihodes / index.html
Last active August 29, 2015 14:00
<html>
<head>
<style>
.node circle {
fill: white;
stroke: steelblue;
stroke-width: 1.5px;
}
.node {
@ihodes
ihodes / index.html
Created May 5, 2014 20:21
<html>
<head>
<style>
.node circle {
fill: white;
stroke: steelblue;
stroke-width: 1.5px;
}
.node {
@ihodes
ihodes / index.html
Created May 6, 2014 16:45
<html>
<head>
<style>
.node circle {
fill: white;
stroke: steelblue;
stroke-width: 1.5px;
}
.node {
@ihodes
ihodes / .bash_profile.sh
Created May 13, 2014 15:32
export PS1="\w > "
export PATH="~/bin:/usr/local/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/heroku/bin"
export EDITOR=emacs
alias l="ls -aG"
alias ll="ls -alG"
alias ls="ls -G"
alias k="kill"
@ihodes
ihodes / .bashrc.sh
Created May 13, 2014 15:34
# From https://gist.github.com/bahamas10/6567725 to fix stupid bash issues
# http://stackoverflow.com/questions/2575037/how-to-get-the-cursor-position-in-bash
# print the current column of the cursor
curcol() {
local pos oldstty row=0 col=0
exec < /dev/tty
oldstty=$(stty -g)
stty raw -echo min 0
tput u7 > /dev/tty
IFS=';' read -r -d R -a pos
@ihodes
ihodes / .tmux.conf
Created May 13, 2014 15:34
# because... emacs
unbind C-b
set -g prefix C-z
# intuitive window splitting
unbind %
bind | split-window -h
bind _ split-window -v