indraniel

package main

// goleveldb test
// mentioned in bleve google group
// https://groups.google.com/forum/#!topic/bleve/aHZ8gmihLiY
//
// Based on an earlier toy program using bleve defaults (including BoltDB):
// https://gist.github.com/indraniel/8108bd7def9b5e222417

import (

indraniel

#!/usr/bin/env perl

use warnings;
use strict;

use DateTime;
use DateTime::Format::Strptime;
use IO::Uncompress::Gunzip qw($GunzipError);
use JSON;

indraniel

Including TikZ Pictures
=======================

In the following, I describe how I include TikZ pictures in my LaTeX
documents.  I decided to put every figure into a separate file, which
I name e.g. "foo.tikz".  The advantages of this approach are:

- One can compile the .tikz file on its own, i.e. editing and fiddling
  around with it until the figure is "done", without compiling the whole
  main document. (For this, I use tikz2pdf_, as described below.)

indraniel

library(ggplot2)

# Taken from:
#   http://stackoverflow.com/questions/24636031/ggplot-geom-segment-sorting-y-axis-labels-factors-according-to-value-of-var

# D A T A #####################################################################
CoW.tmp<-structure(
    list(
         conflict.end = structure(
               c(788  , -2178, -1310, 3648 , 5921 , 6569 , 12793, 12793, 6496 , 8881 , 7695 , 9609 , 8354 , 

indraniel

package main

import (
	"fmt"
	"github.com/syndtr/goleveldb/leveldb"
	"log"
)

func main() {
	db, err := leveldb.OpenFile("/tmp/foo.db", nil)

indraniel

There are lots of buzzwords and acronyms. Here is a brief description of the main ones.

    https - http secure, uses TLS for transmission
    
    TLS - Transport Layer Security (successor to SSL), communications are encrypted
    
    Private Key - Generated key, known only to the host

Identity Certificate - digital file that provides assurance the host is not an imposter

indraniel

#!/usr/bin/python

from __future__ import print_function
import gzip

class GZopen(object):
    def __init__(self, filename):
        f = open(filename)
        # the file type can be determined with the first 2 bytes
        magic_number = f.read(2)

indraniel

#!/bin/bash

declare -a arr=("echo 'hi'" "echo 'hello'")

for (( i = 0; i < ${#arr[@]} ; i++ )); do
    printf "\n**** Running: ${arr[$i]} *****\n\n"

    # Run each command in array 
    eval "${arr[$i]}"
done

indraniel

# Based on reading : http://stackoverflow.com/questions/7936572/python-call-a-function-from-string-name
#                    http://stackoverflow.com/questions/3061/calling-a-function-of-a-module-from-a-string-with-the-functions-name-in-python
class Foo(object):
  
    def dynamic_call(self, attribute_name):
        method_name = 'calculate_' + attribute_name # e.g. given attribute name "baz" call method "calculate_baz" 
        func = getattr(self, method_name)           # find method that located within the class
        func()                                      # execute the method

indraniel

package main

/*
    Building & Usage
    ----------------
    
        go build -o foo subpopulation-annotate.go
       ./foo --in /path/to/input/test.vcf --sample-population-map /path/to/20120131-omni-2141-sample-superpopulation.dat --out /path/to/out.vcf.gz
       
    Where "20120131-omni-2141-sample-superpopulation.dat" is a tsv file like: