Ista Zahn izahn
izahn
/ fst_rds_benchmark.R
Created
July 18, 2019 18:53
A quick comparison between fst and rds IO characteristics
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| library(fst) | |
| n <- 1000000 | |
| d1 <- as.data.frame(c(replicate(50, sample(letters[1:10], n, replace = TRUE), simplify = FALSE), | |
| replicate(50, runif(n), simplify = FALSE))) | |
| tmpf <- tempfile() | |
| rw_time <- function(compression, file, write.fun, read.fun) { | |
| data.frame(compression = compression, | |
| writeTime = system.time(write.fun(d1, file, compress = compression))[[3]], |
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| abind=1.4-5 | |
| assertthat=0.2.0 | |
| backports=1.1.2 | |
| base=3.5.1 | |
| base64enc=0.1-3 | |
| BH=1.66.0-1 | |
| bindr=0.1.1 | |
| bindrcpp=0.2.2 | |
| bit=1.1-14 | |
| bit64=0.9-7 |
izahn
/ tensorflow_build.log
Last active
June 1, 2021 20:47
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| $ python build-locally.py | |
| valid configs are {'linux_64_cuda_compiler_versionNonecudnnundefinedpython3.8.____cpython', 'linux_64_cuda_compiler_versionNonecudnnundefinedpython3.9.____cpython', 'osx_64_python3.9.____cpython', 'linux_64_cuda_compiler_version10.2cudnn7python3.8.____cpython', 'linux_64_cuda_compiler_version10.2cudnn7python3.6.____cpython', 'linux_64_cuda_compiler_version11.2cudnn8python3.6.____cpython', 'linux_64_cuda_compiler_version11.2cudnn8python3.8.____cpython', 'linux_64_cuda_compiler_version11.2cudnn8python3.7.____cpython', 'linux_64_cuda_compiler_versionNonecudnnundefinedpython3.7.____cpython', 'osx_64_python3.7.____cpython', 'linux_64_cuda_compiler_version11.2cudnn8python3.9.____cpython', 'linux_64_cuda_compiler_versionNonecudnnundefinedpython3.6.____cpython', 'osx_64_python3.8.____cpython', 'osx_arm64_python3.8.____cpython', 'osx_64_python3.6.____cpython', 'linux_64_cuda_compiler_version10.2cudnn7python3.7.____cpython', 'linux_64_cuda_compiler_version10.2cudnn7python3.9.____cpython', 'osx |
izahn
/ tensorflow_build_2021_06_02a.log
Created
June 2, 2021 18:23
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| $ python build-locally.py | |
| valid configs are {'linux_64_cuda_compiler_versionNonecudnnundefinedpython3.6.____cpython', 'osx_64_python3.9.____cpython', 'linux_64_cuda_compiler_version11.2cudnn8python3.6.____cpython', 'osx_64_python3.8.____cpython', 'linux_64_cuda_compiler_versionNonecudnnundefinedpython3.7.____cpython', 'osx_64_python3.6.____cpython', 'linux_64_cuda_compiler_version11.2cudnn8python3.7.____cpython', 'linux_64_cuda_compiler_version10.2cudnn7python3.7.____cpython', 'osx_arm64_python3.8.____cpython', 'linux_64_cuda_compiler_version10.2cudnn7python3.8.____cpython', 'linux_64_cuda_compiler_version10.2cudnn7python3.6.____cpython', 'linux_64_cuda_compiler_version10.2cudnn7python3.9.____cpython', 'linux_64_cuda_compiler_versionNonecudnnundefinedpython3.8.____cpython', 'linux_64_cuda_compiler_version11.2cudnn8python3.9.____cpython', 'osx_arm64_python3.9.____cpython', 'linux_64_cuda_compiler_versionNonecudnnundefinedpython3.9.____cpython', 'linux_64_cuda_compiler_version11.2cudnn8python3.8.____cpython', ' |
izahn
/ sklearn_parallel_example.py
Created
June 3, 2021 18:48
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| ## Adapted from https://www.featureranking.com/tutorials/machine-learning-tutorials/sk-part-5-advanced-topics-pipelines-statistical-model-comparison-and-model-deployment/ | |
| ## by Ista | |
| import numpy as np | |
| from sklearn.datasets import load_breast_cancer | |
| from sklearn import preprocessing | |
| from sklearn.pipeline import Pipeline | |
| from sklearn.neighbors import KNeighborsClassifier | |
| from sklearn.model_selection import RepeatedStratifiedKFold, GridSearchCV | |
| from sklearn.feature_selection import SelectKBest, f_classif, mutual_info_classif |
izahn
/ tensorflow_build_2021_06_05.log
Created
June 7, 2021 09:40
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| (test18) | |
| ~/D/tensorflow-feedstock $ python build-locally.py (mamba) | |
| valid configs are {'osx_arm64_python3.9.____cpython', 'linux_64_cuda_compiler_version10.2cudnn7python3.9.____cpython', 'linux_64_cuda_compiler_versionNonecudnnundefinedpython3.9.____cpython', 'linux_64_cuda_compiler_version11.1cudnn8python3.9.____cpython', 'osx_64_python3.9.____cpython', 'linux_64_cuda_compiler_version11.2cudnn8python3.9.____cpython'} | |
| config not selected, please choose from the following: | |
| 1. linux_64_cuda_compiler_version10.2cudnn7python3.9.____cpython | |
| 2. linux_64_cuda_compiler_version11.1cudnn8python3.9.____cpython | |
| 3. linux_64_cuda_compiler_version11.2cudnn8python3.9.____cpython | |
| 4. linux_64_cuda_compiler_versionNonecudnnundefinedpython3.9.____cpython | |
| 5. osx_64_python3.9.____cpython |
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| $SRC_DIR/qttranslations/translations/lrelease_wrapper.sh qtquickcontrols_fr.ts -qm qtquickcontrols_fr.qm | |
| Updating 'qtquickcontrols_fr.qm'... | |
| Generated 75 translation(s) (75 finished and 0 unfinished) | |
| $SRC_DIR/qttranslations/translations/lrelease_wrapper.sh qtquickcontrols_ja.ts -qm qtquickcontrols_ja.qm | |
| Updating 'qtquickcontrols_ja.qm'... | |
| Generated 69 translation(s) (69 finished and 0 unfinished) | |
| $SRC_DIR/qttranslations/translations/lrelease_wrapper.sh qtquickcontrols_ru.ts -qm qtquickcontrols_ru.qm | |
| Updating 'qtquickcontrols_ru.qm'... | |
| Generated 69 translation(s) (69 finished and 0 unfinished) | |
| $SRC_DIR/qttranslations/translations/lrelease_wrapper.sh qtquickcontrols_uk.ts -qm qtquickcontrols_uk.qm |
izahn
/ pkgdiff.txt
Created
June 11, 2021 00:23
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| linux-64::abinit-9.4.2-hed82a66_0.tar.bz2 | |
| - "mpich >=3.4,<3.5.0a0", | |
| + "mpich >=3.4,<4.0.0a0", | |
| linux-64::mpi4jax-0.3.0-py37h1e5cb63_0.tar.bz2 | |
| - "mpich >=3.4,<3.5.0a0", | |
| + "mpich >=3.4,<4.0.0a0", | |
| linux-64::mpi4jax-0.3.0-py38he865349_0.tar.bz2 | |
| - "mpich >=3.4,<3.5.0a0", | |
| + "mpich >=3.4,<4.0.0a0", | |
| linux-64::mpi4jax-0.3.0-py39h6438238_0.tar.bz2 |
izahn
/ cuda111py38hdd42111_1.log
Created
June 23, 2021 11:41
tensorflow build log for python 3.8 with cuda 11.1
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| bash-5.0$ conda build -m .ci_support/linux_64_cuda_compiler_version11.1cudnn8python3.8.____cpython.yaml recipe | |
| No numpy version specified in conda_build_config.yaml. Falling back to default numpy value of 1.16 | |
| WARNING:conda_build.metadata:No numpy version specified in conda_build_config.yaml. Falling back to default numpy value of 1.16 | |
| Adding in variants from internal_defaults | |
| INFO:conda_build.variants:Adding in variants from internal_defaults | |
| Adding in variants from /tmp/rcs_izahn/tftmp/.ci_support/linux_64_cuda_compiler_version11.1cudnn8python3.8.____cpython.yaml | |
| INFO:conda_build.variants:Adding in variants from /tmp/rcs_izahn/tftmp/.ci_support/linux_64_cuda_compiler_version11.1cudnn8python3.8.____cpython.yaml | |
| Attempting to finalize metadata for tensorflow-base | |
| INFO:conda_build.metadata:Attempting to finalize metadata for tensorflow-base | |
| Collecting package metadata (repodata.json): ...working... done |
izahn
/ cuda111py39h769e6be_1.log
Created
June 23, 2021 11:52
ensorflow build log for python 3.9 with cuda 11.1
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| bash-5.0$ conda build -m .ci_support/linux_64_cuda_compiler_version11.1cudnn8python3.9.____cpython.yaml recipe | |
| No numpy version specified in conda_build_config.yaml. Falling back to default numpy value of 1.16 | |
| WARNING:conda_build.metadata:No numpy version specified in conda_build_config.yaml. Falling back to default numpy value of 1.16 | |
| Adding in variants from internal_defaults | |
| INFO:conda_build.variants:Adding in variants from internal_defaults | |
| Adding in variants from /tmp/rcs_izahn/tftmp/.ci_support/linux_64_cuda_compiler_version11.1cudnn8python3.9.____cpython.yaml | |
| INFO:conda_build.variants:Adding in variants from /tmp/rcs_izahn/tftmp/.ci_support/linux_64_cuda_compiler_version11.1cudnn8python3.9.____cpython.yaml | |
| Attempting to finalize metadata for libtensorflow | |
| INFO:conda_build.metadata:Attempting to finalize metadata for libtensorflow | |
| Collecting package metadata (repodata.json): ...working... done |