Jordan Matelsky j6k4m8

How to Build Docs

The B directory (your usual working directory for development) should have a sister directory A at the same level, which is checked out to the gh-pages branch.

# from B directory:
sphinx-apidoc -o ../ndio-docs ./ndio/
cd docs
make html

	.bowtie {
	height: 0;
	border-top: 10px solid black;
	border-left: 10px solid white;
	border-right: 10px solid white;
	border-bottom: 10px solid black;
	width: 29px;
	-webkit-transform: rotate(90deg);
	padding: 4px;
	border-radius: 10px;

	position: absolute;
	top: 0; bottom: 0; left: 0; right: 0;
	height: 50%;
	width: 50%;
	margin: auto;

	/* CHEMICAL CAR: ARDUINO SKETCH
	* You shouldn't have to change anything below the define lines.
	* Contact Jordan ([email protected]) with questions.
	*/

	#define MOTOR 7
	#define SENSOR A0
	#define LED13 13
	#define DELAY 5000

	function RAMON2obj(matrix_or_ramon, id, show)
	%% TO_OBJ Convert an annotation to a 3D .obj file
	% For use with CAJAL (https://github.com/openconnectome/cajal)
	% Pass an anno'd RAMONVolume or its data
	% and this will export a file called
	% `export-{id}.obj` that contains a mesh
	% of the selected anno, where {id} is the
	% id that was exported.
	% TO_OBJ(matrix, id) Convert annotation #id from matrix.data to .obj
	% TO_OBJ(matrix, id, 1) SLOW! Convert as above, but show first

	<html>
	<head>
	<style media="screen">
	* {
	box-sizing: border-box;
	}

	html, body {
	background: beige;
	}

	"""
	Requires ocpy, h5py, PIL (all but PIL are pip-installable)
	"""


	import ocpy.access.download
	from ocpy.convert import png
	from ocpy.access.Request import *
	import os, glob
	import h5py

	import ndio.remote.OCPMeta as ndlims
	import ndio.remote.OCP as OCP

	oo = OCP()
	ndl = ndlims()

	secret = ?????

	species = {
	'Mouse': 'M. musculus',

	# Jordan Matelsky (https://github.com/j6k4m8)
	# uses ndio>=0.1.3
	#
	# Usage: python download-as-png.py token channel res startslice stopslice
	# Example:
	# python download-as-png.py kasthuri11 image 3 1100 1110
	# (Will download slices 1100-1110 of the kasthuri11 dataset at resolution 3)

	import ndio.remote.neurodata as ND
	import ndio.convert.png as ndpng

	#!/usr/bin/env python

	"""
	Written by Jordan Matelsky (@j6k4m8)
	March 5, 2016
	"""

	import sys
	import os
	import argparse