Jaci Saunders jaclynsaunders
jaclynsaunders
/ Protein Groups -- Seth.ipynb
Created
May 7, 2019 15:40
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jaclynsaunders
/ emails-pull-canvas-zoom-breakouts.ipynb
Created
August 19, 2020 22:49
emails-pull-canvas-zoom-breakouts
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jaclynsaunders
/ parse_taxa_CAT.py
Created
April 22, 2021 04:00
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| import pandas as pd | |
| import re | |
| INPUT_FILE = "CAT-taxa-out.txt" | |
| OUTPUT_FILE = "formatted_CAT-taxa-out.txt" | |
| ORF_list = [] | |
| taxid_list = [] | |
| no_hits = [] |
jaclynsaunders
/ rename_ORFs.py
Last active
June 1, 2022 20:16
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| import pandas as pd | |
| from Bio import SeqIO | |
| #As written, this stores sequences in memory. For very large files will want to | |
| #use a different Biopython parsing method. | |
| FILENAME = "input_file_to_rename.fasta" | |
| RENAME_PATTERN = "Project-name_ORF_" | |
| OUT_FILENAME = "outfile_Project_ORF_renamed" | |